data_7C2J # _model_server_result.job_id yWrA50NylCjxTDOhfd0XBw _model_server_result.datetime_utc '2024-11-21 10:18:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7c2j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 7C2J # _exptl.entry_id 7C2J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7C2J _cell.length_a 167.534 _cell.length_b 167.534 _cell.length_c 51.69 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7C2J _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 79 B CYS 74 1_555 E ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc2 B SG CYS 82 B CYS 77 1_555 E ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc3 B NE2 HIS 88 B HIS 83 1_555 E ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc4 B SG CYS 95 B CYS 90 1_555 E ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc5 B SG CYS 122 B CYS 117 1_555 D ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc6 B SG CYS 125 B CYS 120 1_555 D ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc7 B SG CYS 133 B CYS 128 1_555 D ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc8 B SG CYS 135 B CYS 130 1_555 D ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 277 n n N HN1 SAM sing 278 n n N HN2 SAM sing 279 n n CA C SAM sing 280 n n CA CB SAM sing 281 n n CA HA SAM sing 282 n n C O SAM doub 283 n n C OXT SAM sing 284 n n CB CG SAM sing 285 n n CB HB1 SAM sing 286 n n CB HB2 SAM sing 287 n n CG SD SAM sing 288 n n CG HG1 SAM sing 289 n n CG HG2 SAM sing 290 n n SD CE SAM sing 291 n n SD C5' SAM sing 292 n n CE HE1 SAM sing 293 n n CE HE2 SAM sing 294 n n CE HE3 SAM sing 295 n n C5' C4' SAM sing 296 n n C5' "H5'1" SAM sing 297 n n C5' "H5'2" SAM sing 298 n n C4' O4' SAM sing 299 n n C4' C3' SAM sing 300 n n C4' H4' SAM sing 301 n n O4' C1' SAM sing 302 n n C3' O3' SAM sing 303 n n C3' C2' SAM sing 304 n n C3' H3' SAM sing 305 n n O3' HO3' SAM sing 306 n n C2' O2' SAM sing 307 n n C2' C1' SAM sing 308 n n C2' H2' SAM sing 309 n n O2' HO2' SAM sing 310 n n C1' N9 SAM sing 311 n n C1' H1' SAM sing 312 n n N9 C8 SAM sing 313 n y N9 C4 SAM sing 314 n y C8 N7 SAM doub 315 n y C8 H8 SAM sing 316 n n N7 C5 SAM sing 317 n y C5 C6 SAM sing 318 n y C5 C4 SAM doub 319 n y C6 N6 SAM sing 320 n n C6 N1 SAM doub 321 n y N6 HN61 SAM sing 322 n n N6 HN62 SAM sing 323 n n N1 C2 SAM sing 324 n y C2 N3 SAM doub 325 n y C2 H2 SAM sing 326 n n N3 C4 SAM sing 327 n y # _atom_sites.entry_id 7C2J _atom_sites.fract_transf_matrix[1][1] 0.005969 _atom_sites.fract_transf_matrix[1][2] 0.003446 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006892 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SAM A 1 301 310 SAM SAM . D 4 ZN B 1 201 140 ZN ZN . E 4 ZN B 1 202 141 ZN ZN . F 5 HOH A 1 401 32 HOH HOH . F 5 HOH A 2 402 13 HOH HOH . F 5 HOH A 3 403 47 HOH HOH . F 5 HOH A 4 404 30 HOH HOH . F 5 HOH A 5 405 56 HOH HOH . F 5 HOH A 6 406 81 HOH HOH . F 5 HOH A 7 407 6 HOH HOH . F 5 HOH A 8 408 23 HOH HOH . F 5 HOH A 9 409 41 HOH HOH . F 5 HOH A 10 410 59 HOH HOH . F 5 HOH A 11 411 84 HOH HOH . F 5 HOH A 12 412 79 HOH HOH . F 5 HOH A 13 413 38 HOH HOH . F 5 HOH A 14 414 50 HOH HOH . F 5 HOH A 15 415 71 HOH HOH . F 5 HOH A 16 416 83 HOH HOH . F 5 HOH A 17 417 101 HOH HOH . F 5 HOH A 18 418 67 HOH HOH . F 5 HOH A 19 419 17 HOH HOH . F 5 HOH A 20 420 94 HOH HOH . F 5 HOH A 21 421 40 HOH HOH . F 5 HOH A 22 422 85 HOH HOH . F 5 HOH A 23 423 73 HOH HOH . F 5 HOH A 24 424 75 HOH HOH . F 5 HOH A 25 425 39 HOH HOH . F 5 HOH A 26 426 90 HOH HOH . F 5 HOH A 27 427 7 HOH HOH . F 5 HOH A 28 428 68 HOH HOH . F 5 HOH A 29 429 45 HOH HOH . F 5 HOH A 30 430 9 HOH HOH . F 5 HOH A 31 431 29 HOH HOH . F 5 HOH A 32 432 49 HOH HOH . F 5 HOH A 33 433 24 HOH HOH . F 5 HOH A 34 434 64 HOH HOH . F 5 HOH A 35 435 102 HOH HOH . F 5 HOH A 36 436 100 HOH HOH . F 5 HOH A 37 437 33 HOH HOH . F 5 HOH A 38 438 43 HOH HOH . F 5 HOH A 39 439 16 HOH HOH . F 5 HOH A 40 440 21 HOH HOH . F 5 HOH A 41 441 34 HOH HOH . F 5 HOH A 42 442 18 HOH HOH . F 5 HOH A 43 443 12 HOH HOH . F 5 HOH A 44 444 36 HOH HOH . F 5 HOH A 45 445 48 HOH HOH . F 5 HOH A 46 446 28 HOH HOH . F 5 HOH A 47 447 11 HOH HOH . F 5 HOH A 48 448 5 HOH HOH . F 5 HOH A 49 449 61 HOH HOH . F 5 HOH A 50 450 27 HOH HOH . F 5 HOH A 51 451 51 HOH HOH . F 5 HOH A 52 452 31 HOH HOH . F 5 HOH A 53 453 44 HOH HOH . F 5 HOH A 54 454 96 HOH HOH . F 5 HOH A 55 455 99 HOH HOH . F 5 HOH A 56 456 98 HOH HOH . F 5 HOH A 57 457 58 HOH HOH . F 5 HOH A 58 458 46 HOH HOH . F 5 HOH A 59 459 103 HOH HOH . F 5 HOH A 60 460 93 HOH HOH . F 5 HOH A 61 461 20 HOH HOH . F 5 HOH A 62 462 87 HOH HOH . F 5 HOH A 63 463 62 HOH HOH . F 5 HOH A 64 464 42 HOH HOH . F 5 HOH A 65 465 26 HOH HOH . F 5 HOH A 66 466 55 HOH HOH . F 5 HOH A 67 467 89 HOH HOH . F 5 HOH A 68 468 70 HOH HOH . F 5 HOH A 69 469 97 HOH HOH . F 5 HOH A 70 470 69 HOH HOH . F 5 HOH A 71 471 76 HOH HOH . F 5 HOH A 72 472 82 HOH HOH . F 5 HOH A 73 473 65 HOH HOH . F 5 HOH A 74 474 78 HOH HOH . F 5 HOH A 75 475 4 HOH HOH . F 5 HOH A 76 476 77 HOH HOH . F 5 HOH A 77 477 15 HOH HOH . F 5 HOH A 78 478 66 HOH HOH . F 5 HOH A 79 479 95 HOH HOH . F 5 HOH A 80 480 3 HOH HOH . F 5 HOH A 81 481 14 HOH HOH . F 5 HOH A 82 482 74 HOH HOH . F 5 HOH A 83 483 1 HOH HOH . F 5 HOH A 84 484 88 HOH HOH . F 5 HOH A 85 485 63 HOH HOH . F 5 HOH A 86 486 2 HOH HOH . F 5 HOH A 87 487 72 HOH HOH . G 5 HOH B 1 301 19 HOH HOH . G 5 HOH B 2 302 22 HOH HOH . G 5 HOH B 3 303 54 HOH HOH . G 5 HOH B 4 304 10 HOH HOH . G 5 HOH B 5 305 91 HOH HOH . G 5 HOH B 6 306 25 HOH HOH . G 5 HOH B 7 307 8 HOH HOH . G 5 HOH B 8 308 53 HOH HOH . G 5 HOH B 9 309 57 HOH HOH . G 5 HOH B 10 310 80 HOH HOH . G 5 HOH B 11 311 86 HOH HOH . G 5 HOH B 12 312 52 HOH HOH . G 5 HOH B 13 313 92 HOH HOH . G 5 HOH B 14 314 35 HOH HOH . G 5 HOH B 15 315 37 HOH HOH . G 5 HOH B 16 316 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . C 3 -85.628 19.169 24.32 1 21.02 ? N SAM 301 A 1 HETATM 2 C CA SAM . . . C 3 -86.931 18.618 24.651 1 12.1 ? CA SAM 301 A 1 HETATM 3 C C SAM . . . C 3 -88.079 19.38 24.013 1 12.14 ? C SAM 301 A 1 HETATM 4 O O SAM . . . C 3 -87.978 19.834 22.874 1 14.6 ? O SAM 301 A 1 HETATM 5 O OXT SAM . . . C 3 -89.133 19.529 24.623 1 12.71 ? OXT SAM 301 A 1 HETATM 6 C CB SAM . . . C 3 -87.102 18.533 26.16 1 12.66 ? CB SAM 301 A 1 HETATM 7 C CG SAM . . . C 3 -85.851 18.047 26.878 1 12.67 ? CG SAM 301 A 1 HETATM 8 S SD SAM . . . C 3 -86.147 17.658 28.617 1 14.41 ? SD SAM 301 A 1 HETATM 9 C CE SAM . . . C 3 -85.81 19.279 29.338 1 18.24 ? CE SAM 301 A 1 HETATM 10 C C5' SAM . . . C 3 -84.623 16.789 29.032 1 13.82 ? C5' SAM 301 A 1 HETATM 11 C C4' SAM . . . C 3 -84.528 15.422 28.374 1 14.15 ? C4' SAM 301 A 1 HETATM 12 O O4' SAM . . . C 3 -83.239 14.886 28.573 1 15.42 ? O4' SAM 301 A 1 HETATM 13 C C3' SAM . . . C 3 -85.498 14.422 28.975 1 15.3 ? C3' SAM 301 A 1 HETATM 14 O O3' SAM . . . C 3 -86.379 13.975 27.981 1 22.63 ? O3' SAM 301 A 1 HETATM 15 C C2' SAM . . . C 3 -84.652 13.254 29.423 1 16.02 ? C2' SAM 301 A 1 HETATM 16 O O2' SAM . . . C 3 -85.247 12.041 29.035 1 16.79 ? O2' SAM 301 A 1 HETATM 17 C C1' SAM . . . C 3 -83.352 13.487 28.682 1 15.82 ? C1' SAM 301 A 1 HETATM 18 N N9 SAM . . . C 3 -82.18 12.887 29.332 1 15.69 ? N9 SAM 301 A 1 HETATM 19 C C8 SAM . . . C 3 -81.705 13.133 30.587 1 16.64 ? C8 SAM 301 A 1 HETATM 20 N N7 SAM . . . C 3 -80.609 12.373 30.779 1 16.69 ? N7 SAM 301 A 1 HETATM 21 C C5 SAM . . . C 3 -80.377 11.649 29.669 1 16.56 ? C5 SAM 301 A 1 HETATM 22 C C6 SAM . . . C 3 -79.399 10.726 29.342 1 21.9 ? C6 SAM 301 A 1 HETATM 23 N N6 SAM . . . C 3 -78.452 10.418 30.225 1 20.68 ? N6 SAM 301 A 1 HETATM 24 N N1 SAM . . . C 3 -79.417 10.131 28.1 1 18.94 ? N1 SAM 301 A 1 HETATM 25 C C2 SAM . . . C 3 -80.405 10.459 27.203 1 16.31 ? C2 SAM 301 A 1 HETATM 26 N N3 SAM . . . C 3 -81.374 11.378 27.54 1 16.29 ? N3 SAM 301 A 1 HETATM 27 C C4 SAM . . . C 3 -81.357 11.965 28.755 1 15.93 ? C4 SAM 301 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #