data_7C33
#
_model_server_result.job_id            G8GSytJqKovxhj4HKwHr4g 
_model_server_result.datetime_utc      '2024-11-21 09:20:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7c33 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":201}' 
#
_entry.id    7C33 
#
_exptl.entry_id    7C33 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              559.316 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ADENOSINE-5-DIPHOSPHORIBOSE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7C33 
_cell.length_a            85.993 
_cell.length_b            85.993 
_cell.length_c            143.567 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7C33 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    'P 4w' 
_symmetry.space_group_name_H-M     'P 41' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E 1 1 
B,F 2 1 
C,G 3 1 
D,H 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C15 H23 N5 O14 P2' 
_chem_comp.formula_weight    559.316 
_chem_comp.id                APR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ADENOSINE-5-DIPHOSPHORIBOSE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 APR sing 13 n y 
N1 C6 APR doub 14 n y 
C2 N3 APR doub 15 n y 
C2 H2 APR sing 16 n n 
N3 C4 APR sing 17 n y 
C4 C5 APR doub 18 n y 
C4 N9 APR sing 19 n y 
C5 C6 APR sing 20 n y 
C5 N7 APR sing 21 n y 
C6 N6 APR sing 22 n n 
N6 H61 APR sing 23 n n 
N6 H62 APR sing 24 n n 
N7 C8 APR doub 25 n y 
C8 N9 APR sing 26 n y 
C8 H8 APR sing 27 n n 
N9 C1' APR sing 28 n n 
C1' C2' APR sing 29 n n 
C1' O4' APR sing 30 n n 
C1' "H'1" APR sing 31 n n 
C2' O2' APR sing 32 n n 
C2' C3' APR sing 33 n n 
C2' "H'2" APR sing 34 n n 
O2' "HO'2" APR sing 35 n n 
C3' O3' APR sing 36 n n 
C3' C4' APR sing 37 n n 
C3' "H'3" APR sing 38 n n 
O3' "HO'3" APR sing 39 n n 
O4' C4' APR sing 40 n n 
C4' C5' APR sing 41 n n 
C4' "H'4" APR sing 42 n n 
C5' O5' APR sing 43 n n 
C5' "H5'1" APR sing 44 n n 
C5' "H5'2" APR sing 45 n n 
O5' PA APR sing 46 n n 
PA O1A APR doub 47 n n 
PA O2A APR sing 48 n n 
PA O3A APR sing 49 n n 
O2A HOA2 APR sing 50 n n 
O3A PB APR sing 51 n n 
PB O1B APR doub 52 n n 
PB O2B APR sing 53 n n 
PB O5D APR sing 54 n n 
O2B HOB2 APR sing 55 n n 
O5D C5D APR sing 56 n n 
C5D C4D APR sing 57 n n 
C5D H5R1 APR sing 58 n n 
C5D H5R2 APR sing 59 n n 
O4D C1D APR sing 60 n n 
O4D C4D APR sing 61 n n 
O1D C1D APR sing 62 n n 
O1D HOR1 APR sing 63 n n 
C1D C2D APR sing 64 n n 
C1D "HR'1" APR sing 65 n n 
O2D C2D APR sing 66 n n 
O2D HOR2 APR sing 67 n n 
C2D C3D APR sing 68 n n 
C2D "HR'2" APR sing 69 n n 
O3D C3D APR sing 70 n n 
O3D HOR3 APR sing 71 n n 
C3D C4D APR sing 72 n n 
C3D "HR'3" APR sing 73 n n 
C4D "HR'4" APR sing 74 n n 
#
_atom_sites.entry_id                     7C33 
_atom_sites.fract_transf_matrix[1][1]    0.011629 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011629 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006965 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 APR A 1 201 201 APR APR . 
F 2 APR B 1 201 201 APR APR . 
G 2 APR C 1 201 201 APR APR . 
H 2 APR D 1 201 201 APR APR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 APR . . . G 2 21.689 15.337 23.096 1 27.16 ? N1 APR 201 C 1 
HETATM 2 C C2 APR . . . G 2 20.839 15.759 24.043 1 31.97 ? C2 APR 201 C 1 
HETATM 3 N N3 APR . . . G 2 19.992 16.785 24.025 1 40.99 ? N3 APR 201 C 1 
HETATM 4 C C4 APR . . . G 2 20.085 17.439 22.858 1 37.52 ? C4 APR 201 C 1 
HETATM 5 C C5 APR . . . G 2 20.924 17.147 21.806 1 30.55 ? C5 APR 201 C 1 
HETATM 6 C C6 APR . . . G 2 21.781 16.042 21.95 1 30.89 ? C6 APR 201 C 1 
HETATM 7 N N6 APR . . . G 2 22.628 15.628 21.014 1 41.69 ? N6 APR 201 C 1 
HETATM 8 N N7 APR . . . G 2 20.731 18.057 20.774 1 29.18 ? N7 APR 201 C 1 
HETATM 9 C C8 APR . . . G 2 19.791 18.865 21.208 1 30.18 ? C8 APR 201 C 1 
HETATM 10 N N9 APR . . . G 2 19.364 18.537 22.477 1 35.54 ? N9 APR 201 C 1 
HETATM 11 C C1' APR . . . G 2 18.335 19.188 23.266 1 31.62 ? C1' APR 201 C 1 
HETATM 12 C C2' APR . . . G 2 18.02 20.62 22.84 1 26.71 ? C2' APR 201 C 1 
HETATM 13 O O2' APR . . . G 2 18.92 21.553 23.394 1 15.08 ? O2' APR 201 C 1 
HETATM 14 C C3' APR . . . G 2 16.614 20.769 23.42 1 21.98 ? C3' APR 201 C 1 
HETATM 15 O O3' APR . . . G 2 16.842 21.08 24.787 1 18.43 ? O3' APR 201 C 1 
HETATM 16 O O4' APR . . . G 2 17.134 18.467 23.106 1 27.97 ? O4' APR 201 C 1 
HETATM 17 C C4' APR . . . G 2 16.009 19.383 23.142 1 24.35 ? C4' APR 201 C 1 
HETATM 18 C C5' APR . . . G 2 15.244 19.226 21.846 1 19.96 ? C5' APR 201 C 1 
HETATM 19 O O5' APR . . . G 2 15.972 19.857 20.757 1 19.85 ? O5' APR 201 C 1 
HETATM 20 P PA APR . . . G 2 15.621 19.435 19.25 1 13.83 ? PA APR 201 C 1 
HETATM 21 O O1A APR . . . G 2 16.264 18.135 18.901 1 16.9 ? O1A APR 201 C 1 
HETATM 22 O O2A APR . . . G 2 15.86 20.59 18.334 1 17.79 ? O2A APR 201 C 1 
HETATM 23 O O3A APR . . . G 2 14.054 19.169 19.388 1 14.47 ? O3A APR 201 C 1 
HETATM 24 P PB APR . . . G 2 12.739 19.939 18.904 1 16.51 ? PB APR 201 C 1 
HETATM 25 O O1B APR . . . G 2 11.567 19.052 19.164 1 17.66 ? O1B APR 201 C 1 
HETATM 26 O O2B APR . . . G 2 12.747 21.32 19.473 1 17.78 ? O2B APR 201 C 1 
HETATM 27 O O5D APR . . . G 2 13.023 20.024 17.333 1 24.07 ? O5D APR 201 C 1 
HETATM 28 C C5D APR . . . G 2 12.356 19.19 16.368 1 19.41 ? C5D APR 201 C 1 
HETATM 29 O O4D APR . . . G 2 14.418 19.378 15.168 1 23.19 ? O4D APR 201 C 1 
HETATM 30 O O1D APR . . . G 2 16.111 18.005 14.438 1 27.77 ? O1D APR 201 C 1 
HETATM 31 C C1D APR . . . G 2 14.922 18.61 14.095 1 27.75 ? C1D APR 201 C 1 
HETATM 32 O O2D APR . . . G 2 13.925 16.876 12.633 1 26.04 ? O2D APR 201 C 1 
HETATM 33 C C2D APR . . . G 2 13.813 17.586 13.844 1 29.8 ? C2D APR 201 C 1 
HETATM 34 O O3D APR . . . G 2 12.538 19.234 12.643 1 31.86 ? O3D APR 201 C 1 
HETATM 35 C C3D APR . . . G 2 12.612 18.522 13.871 1 27.8 ? C3D APR 201 C 1 
HETATM 36 C C4D APR . . . G 2 12.981 19.47 15.022 1 19.7 ? C4D APR 201 C 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           36 
#