data_7C3Q
#
_model_server_result.job_id            IKorRmS18D41NsDOtnEJEA 
_model_server_result.datetime_utc      '2025-01-26 16:30:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7c3q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    7C3Q 
#
_exptl.entry_id    7C3Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              581.49 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-({(4S,5R)-4,5-bis(4-chlorophenyl)-2-[4-methoxy-2-(propan-2-yloxy)phenyl]-4,5-dihydro-1H-imidazol-1-yl}carbonyl)piperazin-2-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7C3Q 
_cell.length_a            47.727 
_cell.length_b            47.727 
_cell.length_c            92.321 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7C3Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C30 H30 Cl2 N4 O4' 
_chem_comp.formula_weight    581.49 
_chem_comp.id                NUT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-({(4S,5R)-4,5-bis(4-chlorophenyl)-2-[4-methoxy-2-(propan-2-yloxy)phenyl]-4,5-dihydro-1H-imidazol-1-yl}carbonyl)piperazin-2-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Nutlin 3a' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 C28 NUT doub 237 n n 
C28 C29 NUT sing 238 n n 
C28 N3 NUT sing 239 n n 
C29 N2 NUT sing 240 n n 
O3 C25 NUT doub 241 n n 
N3 C27 NUT sing 242 n n 
C25 N2 NUT sing 243 n n 
C25 N1 NUT sing 244 n n 
N2 C26 NUT sing 245 n n 
C27 C26 NUT sing 246 n n 
C11 C18 NUT sing 247 n n 
C11 N NUT sing 248 n n 
C11 C12 NUT sing 249 n n 
C3 C2 NUT doub 250 n y 
C3 C9 NUT sing 251 n y 
N1 C18 NUT sing 252 n n 
N1 C10 NUT sing 253 n n 
C2 C1 NUT sing 254 n y 
C17 C12 NUT doub 255 n y 
C17 C16 NUT sing 256 n y 
C18 C19 NUT sing 257 n n 
C10 N NUT doub 258 n n 
C10 C9 NUT sing 259 n n 
C9 C5 NUT doub 260 n y 
C O NUT sing 261 n n 
C12 C13 NUT sing 262 n y 
C1 O NUT sing 263 n n 
C1 C4 NUT doub 264 n y 
C16 C15 NUT doub 265 n y 
C5 C4 NUT sing 266 n y 
C5 O1 NUT sing 267 n n 
C8 C6 NUT sing 268 n n 
O1 C6 NUT sing 269 n n 
C19 C24 NUT doub 270 n y 
C19 C20 NUT sing 271 n y 
C24 C23 NUT sing 272 n y 
C13 C14 NUT doub 273 n y 
C15 C14 NUT sing 274 n y 
C15 CL NUT sing 275 n n 
C6 C7 NUT sing 276 n n 
C20 C21 NUT doub 277 n y 
C23 C22 NUT doub 278 n y 
C21 C22 NUT sing 279 n y 
C22 CL1 NUT sing 280 n n 
C29 H1 NUT sing 281 n n 
C29 H2 NUT sing 282 n n 
N3 H3 NUT sing 283 n n 
C27 H4 NUT sing 284 n n 
C27 H5 NUT sing 285 n n 
C26 H6 NUT sing 286 n n 
C26 H7 NUT sing 287 n n 
C3 H9 NUT sing 288 n n 
C2 H10 NUT sing 289 n n 
C6 H11 NUT sing 290 n n 
C8 H12 NUT sing 291 n n 
C8 H13 NUT sing 292 n n 
C8 H14 NUT sing 293 n n 
C7 H15 NUT sing 294 n n 
C7 H16 NUT sing 295 n n 
C7 H17 NUT sing 296 n n 
C4 H18 NUT sing 297 n n 
C H19 NUT sing 298 n n 
C H20 NUT sing 299 n n 
C H21 NUT sing 300 n n 
C18 H22 NUT sing 301 n n 
C24 H23 NUT sing 302 n n 
C23 H24 NUT sing 303 n n 
C21 H25 NUT sing 304 n n 
C20 H26 NUT sing 305 n n 
C11 H27 NUT sing 306 n n 
C17 H30 NUT sing 307 n n 
C16 H31 NUT sing 308 n n 
C14 H32 NUT sing 309 n n 
C13 H33 NUT sing 310 n n 
#
_atom_sites.entry_id                     7C3Q 
_atom_sites.fract_transf_matrix[1][1]    0.020953 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020953 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010832 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 O4B A 1 201 11 O4B O4B . 
C 3 NUT A 1 202 21 NUT NUT . 
D 4 PEG A 1 203 31 PEG PEG . 
E 5 HOH A 1 301 30 HOH HOH . 
E 5 HOH A 2 302 18 HOH HOH . 
E 5 HOH A 3 303 29 HOH HOH . 
E 5 HOH A 4 304 22 HOH HOH . 
E 5 HOH A 5 305 11 HOH HOH . 
E 5 HOH A 6 306 26 HOH HOH . 
E 5 HOH A 7 307 24 HOH HOH . 
E 5 HOH A 8 308 21 HOH HOH . 
E 5 HOH A 9 309 15 HOH HOH . 
E 5 HOH A 10 310 14 HOH HOH . 
E 5 HOH A 11 311 12 HOH HOH . 
E 5 HOH A 12 312 23 HOH HOH . 
E 5 HOH A 13 313 13 HOH HOH . 
E 5 HOH A 14 314 17 HOH HOH . 
E 5 HOH A 15 315 19 HOH HOH . 
E 5 HOH A 16 316 28 HOH HOH . 
E 5 HOH A 17 317 25 HOH HOH . 
E 5 HOH A 18 318 20 HOH HOH . 
E 5 HOH A 19 319 16 HOH HOH . 
E 5 HOH A 20 320 27 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3 NUT . . . C 3 9.427 -13.245 -4.884 1 34.96 ? O3 NUT 202 A 1 
HETATM 2 C C25 NUT . . . C 3 9.307 -14.187 -5.69 1 35.75 ? C25 NUT 202 A 1 
HETATM 3 N N2 NUT . . . C 3 8.515 -14.109 -6.804 1 45.36 ? N2 NUT 202 A 1 
HETATM 4 C C29 NUT . . . C 3 7.997 -12.807 -7.223 1 52.03 ? C29 NUT 202 A 1 
HETATM 5 C C28 NUT . . . C 3 7.091 -12.948 -8.416 1 62.18 ? C28 NUT 202 A 1 
HETATM 6 O O2 NUT . . . C 3 6.306 -12.018 -8.687 1 76.86 ? O2 NUT 202 A 1 
HETATM 7 N N3 NUT . . . C 3 7.143 -14.061 -9.139 1 54.71 ? N3 NUT 202 A 1 
HETATM 8 C C27 NUT . . . C 3 7.471 -15.38 -8.626 1 53.13 ? C27 NUT 202 A 1 
HETATM 9 C C26 NUT . . . C 3 7.646 -15.267 -7.136 1 48 ? C26 NUT 202 A 1 
HETATM 10 N N1 NUT . . . C 3 9.972 -15.398 -5.442 1 30.98 ? N1 NUT 202 A 1 
HETATM 11 C C10 NUT . . . C 3 10.48 -16.403 -6.289 1 27.75 ? C10 NUT 202 A 1 
HETATM 12 C C9 NUT . . . C 3 10.732 -16.204 -7.714 1 33.5 ? C9 NUT 202 A 1 
HETATM 13 C C3 NUT . . . C 3 10.443 -17.251 -8.583 1 39.1 ? C3 NUT 202 A 1 
HETATM 14 C C2 NUT . . . C 3 10.679 -17.124 -9.932 1 40.57 ? C2 NUT 202 A 1 
HETATM 15 C C5 NUT . . . C 3 11.269 -15.022 -8.206 1 35.37 ? C5 NUT 202 A 1 
HETATM 16 O O1 NUT . . . C 3 11.571 -14.061 -7.28 1 36.66 ? O1 NUT 202 A 1 
HETATM 17 C C6 NUT . . . C 3 11.998 -12.724 -7.667 1 36.67 ? C6 NUT 202 A 1 
HETATM 18 C C8 NUT . . . C 3 11.728 -11.82 -6.494 1 39.8 ? C8 NUT 202 A 1 
HETATM 19 C C7 NUT . . . C 3 13.461 -12.827 -8.022 1 35.99 ? C7 NUT 202 A 1 
HETATM 20 C C4 NUT . . . C 3 11.492 -14.878 -9.577 1 40.57 ? C4 NUT 202 A 1 
HETATM 21 C C1 NUT . . . C 3 11.213 -15.944 -10.426 1 45.72 ? C1 NUT 202 A 1 
HETATM 22 O O NUT . . . C 3 11.433 -15.85 -11.773 1 56.34 ? O NUT 202 A 1 
HETATM 23 C C NUT . . . C 3 11.747 -17.052 -12.485 1 51.68 ? C NUT 202 A 1 
HETATM 24 C C18 NUT . . . C 3 10.197 -15.803 -4.07 1 26.91 ? C18 NUT 202 A 1 
HETATM 25 C C19 NUT . . . C 3 11.363 -15.114 -3.4 1 24.82 ? C19 NUT 202 A 1 
HETATM 26 C C24 NUT . . . C 3 12.526 -14.814 -4.086 1 27.33 ? C24 NUT 202 A 1 
HETATM 27 C C23 NUT . . . C 3 13.61 -14.246 -3.435 1 26.26 ? C23 NUT 202 A 1 
HETATM 28 C C22 NUT . . . C 3 13.523 -14.02 -2.08 1 26.26 ? C22 NUT 202 A 1 
HETATM 29 CL CL1 NUT . . . C 3 14.878 -13.315 -1.247 1 29.07 ? CL1 NUT 202 A 1 
HETATM 30 C C21 NUT . . . C 3 12.377 -14.276 -1.384 1 25.95 ? C21 NUT 202 A 1 
HETATM 31 C C20 NUT . . . C 3 11.301 -14.829 -2.045 1 25.3 ? C20 NUT 202 A 1 
HETATM 32 C C11 NUT . . . C 3 10.355 -17.339 -4.27 1 29.06 ? C11 NUT 202 A 1 
HETATM 33 N N NUT . . . C 3 10.732 -17.521 -5.692 1 28.86 ? N NUT 202 A 1 
HETATM 34 C C12 NUT . . . C 3 11.327 -17.996 -3.334 1 28.77 ? C12 NUT 202 A 1 
HETATM 35 C C17 NUT . . . C 3 10.931 -18.337 -2.052 1 26.83 ? C17 NUT 202 A 1 
HETATM 36 C C16 NUT . . . C 3 11.807 -18.949 -1.178 1 28.34 ? C16 NUT 202 A 1 
HETATM 37 C C15 NUT . . . C 3 13.09 -19.196 -1.605 1 31.28 ? C15 NUT 202 A 1 
HETATM 38 CL CL NUT . . . C 3 14.193 -19.961 -0.51 1 34.16 ? CL NUT 202 A 1 
HETATM 39 C C14 NUT . . . C 3 13.519 -18.859 -2.869 1 34.49 ? C14 NUT 202 A 1 
HETATM 40 C C13 NUT . . . C 3 12.628 -18.279 -3.746 1 28.38 ? C13 NUT 202 A 1 
HETATM 41 H H1 NUT . . . C 3 7.48 -12.412 -6.49 1 52.03 ? H1 NUT 202 A 1 
HETATM 42 H H2 NUT . . . C 3 8.745 -12.225 -7.473 1 52.03 ? H2 NUT 202 A 1 
HETATM 43 H H3 NUT . . . C 3 6.971 -13.998 -9.968 1 54.71 ? H3 NUT 202 A 1 
HETATM 44 H H4 NUT . . . C 3 8.309 -15.699 -9.045 1 53.13 ? H4 NUT 202 A 1 
HETATM 45 H H5 NUT . . . C 3 6.737 -16.009 -8.837 1 53.13 ? H5 NUT 202 A 1 
HETATM 46 H H6 NUT . . . C 3 6.771 -15.151 -6.714 1 48 ? H6 NUT 202 A 1 
HETATM 47 H H7 NUT . . . C 3 8.051 -16.089 -6.793 1 48 ? H7 NUT 202 A 1 
HETATM 48 H H9 NUT . . . C 3 10.083 -18.053 -8.246 1 39.1 ? H9 NUT 202 A 1 
HETATM 49 H H10 NUT . . . C 3 10.494 -17.839 -10.516 1 40.57 ? H10 NUT 202 A 1 
HETATM 50 H H11 NUT . . . C 3 11.47 -12.422 -8.458 1 36.67 ? H11 NUT 202 A 1 
HETATM 51 H H12 NUT . . . C 3 12.001 -10.911 -6.712 1 39.8 ? H12 NUT 202 A 1 
HETATM 52 H H13 NUT . . . C 3 12.228 -12.129 -5.723 1 39.8 ? H13 NUT 202 A 1 
HETATM 53 H H14 NUT . . . C 3 10.78 -11.83 -6.287 1 39.8 ? H14 NUT 202 A 1 
HETATM 54 H H15 NUT . . . C 3 13.761 -13.747 -7.909 1 35.99 ? H15 NUT 202 A 1 
HETATM 55 H H16 NUT . . . C 3 13.979 -12.247 -7.442 1 35.99 ? H16 NUT 202 A 1 
HETATM 56 H H17 NUT . . . C 3 13.592 -12.558 -8.945 1 35.99 ? H17 NUT 202 A 1 
HETATM 57 H H18 NUT . . . C 3 11.855 -14.085 -9.925 1 40.57 ? H18 NUT 202 A 1 
HETATM 58 H H19 NUT . . . C 3 11.016 -17.684 -12.391 1 51.68 ? H19 NUT 202 A 1 
HETATM 59 H H20 NUT . . . C 3 12.559 -17.439 -12.122 1 51.68 ? H20 NUT 202 A 1 
HETATM 60 H H21 NUT . . . C 3 11.878 -16.846 -13.424 1 51.68 ? H21 NUT 202 A 1 
HETATM 61 H H22 NUT . . . C 3 9.399 -15.624 -3.516 1 26.91 ? H22 NUT 202 A 1 
HETATM 62 H H23 NUT . . . C 3 12.585 -14.997 -5.006 1 27.33 ? H23 NUT 202 A 1 
HETATM 63 H H24 NUT . . . C 3 14.406 -14.064 -3.898 1 26.26 ? H24 NUT 202 A 1 
HETATM 64 H H25 NUT . . . C 3 12.326 -14.086 -0.466 1 25.95 ? H25 NUT 202 A 1 
HETATM 65 H H26 NUT . . . C 3 10.535 -15.067 -1.555 1 25.3 ? H26 NUT 202 A 1 
HETATM 66 H H27 NUT . . . C 3 9.475 -17.77 -4.129 1 29.06 ? H27 NUT 202 A 1 
HETATM 67 H H30 NUT . . . C 3 10.051 -18.15 -1.769 1 26.83 ? H30 NUT 202 A 1 
HETATM 68 H H31 NUT . . . C 3 11.538 -19.191 -0.311 1 28.34 ? H31 NUT 202 A 1 
HETATM 69 H H32 NUT . . . C 3 14.4 -19.041 -3.137 1 34.49 ? H32 NUT 202 A 1 
HETATM 70 H H33 NUT . . . C 3 12.918 -18.047 -4.613 1 28.38 ? H33 NUT 202 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           353 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           70 
#