data_7C3Y
#
_model_server_result.job_id            xvu31gXIMknp1KcLCBHBSg 
_model_server_result.datetime_utc      '2025-01-10 16:09:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7c3y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    7C3Y 
#
_exptl.entry_id    7C3Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              581.49 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-({(4S,5R)-4,5-bis(4-chlorophenyl)-2-[4-methoxy-2-(propan-2-yloxy)phenyl]-4,5-dihydro-1H-imidazol-1-yl}carbonyl)piperazin-2-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7C3Y 
_cell.length_a            47.552 
_cell.length_b            47.552 
_cell.length_c            90.676 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7C3Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C30 H30 Cl2 N4 O4' 
_chem_comp.formula_weight    581.49 
_chem_comp.id                NUT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-({(4S,5R)-4,5-bis(4-chlorophenyl)-2-[4-methoxy-2-(propan-2-yloxy)phenyl]-4,5-dihydro-1H-imidazol-1-yl}carbonyl)piperazin-2-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Nutlin 3a' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 C28 NUT doub 237 n n 
C28 C29 NUT sing 238 n n 
C28 N3 NUT sing 239 n n 
C29 N2 NUT sing 240 n n 
O3 C25 NUT doub 241 n n 
N3 C27 NUT sing 242 n n 
C25 N2 NUT sing 243 n n 
C25 N1 NUT sing 244 n n 
N2 C26 NUT sing 245 n n 
C27 C26 NUT sing 246 n n 
C11 C18 NUT sing 247 n n 
C11 N NUT sing 248 n n 
C11 C12 NUT sing 249 n n 
C3 C2 NUT doub 250 n y 
C3 C9 NUT sing 251 n y 
N1 C18 NUT sing 252 n n 
N1 C10 NUT sing 253 n n 
C2 C1 NUT sing 254 n y 
C17 C12 NUT doub 255 n y 
C17 C16 NUT sing 256 n y 
C18 C19 NUT sing 257 n n 
C10 N NUT doub 258 n n 
C10 C9 NUT sing 259 n n 
C9 C5 NUT doub 260 n y 
C O NUT sing 261 n n 
C12 C13 NUT sing 262 n y 
C1 O NUT sing 263 n n 
C1 C4 NUT doub 264 n y 
C16 C15 NUT doub 265 n y 
C5 C4 NUT sing 266 n y 
C5 O1 NUT sing 267 n n 
C8 C6 NUT sing 268 n n 
O1 C6 NUT sing 269 n n 
C19 C24 NUT doub 270 n y 
C19 C20 NUT sing 271 n y 
C24 C23 NUT sing 272 n y 
C13 C14 NUT doub 273 n y 
C15 C14 NUT sing 274 n y 
C15 CL NUT sing 275 n n 
C6 C7 NUT sing 276 n n 
C20 C21 NUT doub 277 n y 
C23 C22 NUT doub 278 n y 
C21 C22 NUT sing 279 n y 
C22 CL1 NUT sing 280 n n 
C29 H1 NUT sing 281 n n 
C29 H2 NUT sing 282 n n 
N3 H3 NUT sing 283 n n 
C27 H4 NUT sing 284 n n 
C27 H5 NUT sing 285 n n 
C26 H6 NUT sing 286 n n 
C26 H7 NUT sing 287 n n 
C3 H9 NUT sing 288 n n 
C2 H10 NUT sing 289 n n 
C6 H11 NUT sing 290 n n 
C8 H12 NUT sing 291 n n 
C8 H13 NUT sing 292 n n 
C8 H14 NUT sing 293 n n 
C7 H15 NUT sing 294 n n 
C7 H16 NUT sing 295 n n 
C7 H17 NUT sing 296 n n 
C4 H18 NUT sing 297 n n 
C H19 NUT sing 298 n n 
C H20 NUT sing 299 n n 
C H21 NUT sing 300 n n 
C18 H22 NUT sing 301 n n 
C24 H23 NUT sing 302 n n 
C23 H24 NUT sing 303 n n 
C21 H25 NUT sing 304 n n 
C20 H26 NUT sing 305 n n 
C11 H27 NUT sing 306 n n 
C17 H30 NUT sing 307 n n 
C16 H31 NUT sing 308 n n 
C14 H32 NUT sing 309 n n 
C13 H33 NUT sing 310 n n 
#
_atom_sites.entry_id                     7C3Y 
_atom_sites.fract_transf_matrix[1][1]    0.02103 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02103 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011028 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 O4B A 1 201 11 O4B O4B . 
C 3 NUT A 1 202 21 NUT NUT . 
D 4 HOH A 1 301 24 HOH HOH . 
D 4 HOH A 2 302 30 HOH HOH . 
D 4 HOH A 3 303 28 HOH HOH . 
D 4 HOH A 4 304 20 HOH HOH . 
D 4 HOH A 5 305 18 HOH HOH . 
D 4 HOH A 6 306 16 HOH HOH . 
D 4 HOH A 7 307 11 HOH HOH . 
D 4 HOH A 8 308 12 HOH HOH . 
D 4 HOH A 9 309 27 HOH HOH . 
D 4 HOH A 10 310 29 HOH HOH . 
D 4 HOH A 11 311 32 HOH HOH . 
D 4 HOH A 12 312 14 HOH HOH . 
D 4 HOH A 13 313 33 HOH HOH . 
D 4 HOH A 14 314 23 HOH HOH . 
D 4 HOH A 15 315 31 HOH HOH . 
D 4 HOH A 16 316 25 HOH HOH . 
D 4 HOH A 17 317 34 HOH HOH . 
D 4 HOH A 18 318 17 HOH HOH . 
D 4 HOH A 19 319 15 HOH HOH . 
D 4 HOH A 20 320 13 HOH HOH . 
D 4 HOH A 21 321 35 HOH HOH . 
D 4 HOH A 22 322 26 HOH HOH . 
D 4 HOH A 23 323 19 HOH HOH . 
D 4 HOH A 24 324 22 HOH HOH . 
D 4 HOH A 25 325 21 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3 NUT . . . C 3 9.006 -13.801 -4.728 1 38.16 ? O3 NUT 202 A 1 
HETATM 2 C C25 NUT . . . C 3 8.924 -14.73 -5.508 1 39.73 ? C25 NUT 202 A 1 
HETATM 3 N N2 NUT . . . C 3 8.175 -14.676 -6.649 1 48.78 ? N2 NUT 202 A 1 
HETATM 4 C C29 NUT . . . C 3 7.652 -13.348 -6.952 1 54.55 ? C29 NUT 202 A 1 
HETATM 5 C C28 NUT . . . C 3 7.102 -13.302 -8.341 1 64.02 ? C28 NUT 202 A 1 
HETATM 6 O O2 NUT . . . C 3 6.915 -12.179 -8.85 1 86.04 ? O2 NUT 202 A 1 
HETATM 7 N N3 NUT . . . C 3 6.824 -14.44 -8.982 1 61.56 ? N3 NUT 202 A 1 
HETATM 8 C C27 NUT . . . C 3 6.974 -15.805 -8.491 1 56.86 ? C27 NUT 202 A 1 
HETATM 9 C C26 NUT . . . C 3 7.291 -15.812 -7.015 1 49.08 ? C26 NUT 202 A 1 
HETATM 10 N N1 NUT . . . C 3 9.595 -15.897 -5.201 1 34.84 ? N1 NUT 202 A 1 
HETATM 11 C C10 NUT . . . C 3 10.129 -16.835 -6.075 1 33.52 ? C10 NUT 202 A 1 
HETATM 12 C C9 NUT . . . C 3 10.369 -16.625 -7.515 1 37.14 ? C9 NUT 202 A 1 
HETATM 13 C C3 NUT . . . C 3 10.088 -17.685 -8.372 1 39.78 ? C3 NUT 202 A 1 
HETATM 14 C C2 NUT . . . C 3 10.294 -17.56 -9.725 1 40.16 ? C2 NUT 202 A 1 
HETATM 15 C C5 NUT . . . C 3 10.932 -15.456 -8.04 1 36.44 ? C5 NUT 202 A 1 
HETATM 16 O O1 NUT . . . C 3 11.226 -14.457 -7.165 1 35.77 ? O1 NUT 202 A 1 
HETATM 17 C C6 NUT . . . C 3 11.643 -13.113 -7.534 1 37.5 ? C6 NUT 202 A 1 
HETATM 18 C C8 NUT . . . C 3 11.349 -12.194 -6.371 1 34.56 ? C8 NUT 202 A 1 
HETATM 19 C C7 NUT . . . C 3 13.124 -13.171 -7.831 1 33.07 ? C7 NUT 202 A 1 
HETATM 20 C C4 NUT . . . C 3 11.133 -15.315 -9.408 1 38.46 ? C4 NUT 202 A 1 
HETATM 21 C C1 NUT . . . C 3 10.836 -16.39 -10.239 1 45.67 ? C1 NUT 202 A 1 
HETATM 22 O O NUT . . . C 3 11.04 -16.268 -11.585 1 48.97 ? O NUT 202 A 1 
HETATM 23 C C NUT . . . C 3 11.118 -17.466 -12.371 1 49.03 ? C NUT 202 A 1 
HETATM 24 C C18 NUT . . . C 3 9.854 -16.276 -3.847 1 34.52 ? C18 NUT 202 A 1 
HETATM 25 C C19 NUT . . . C 3 11.023 -15.556 -3.2 1 31.29 ? C19 NUT 202 A 1 
HETATM 26 C C24 NUT . . . C 3 12.159 -15.237 -3.917 1 31.53 ? C24 NUT 202 A 1 
HETATM 27 C C23 NUT . . . C 3 13.236 -14.613 -3.308 1 32.15 ? C23 NUT 202 A 1 
HETATM 28 C C22 NUT . . . C 3 13.178 -14.359 -1.959 1 32.41 ? C22 NUT 202 A 1 
HETATM 29 CL CL1 NUT . . . C 3 14.528 -13.605 -1.166 1 32.8 ? CL1 NUT 202 A 1 
HETATM 30 C C21 NUT . . . C 3 12.07 -14.662 -1.223 1 31.58 ? C21 NUT 202 A 1 
HETATM 31 C C20 NUT . . . C 3 11.002 -15.28 -1.842 1 33.25 ? C20 NUT 202 A 1 
HETATM 32 C C11 NUT . . . C 3 10.054 -17.809 -4.071 1 34.77 ? C11 NUT 202 A 1 
HETATM 33 N N NUT . . . C 3 10.403 -17.933 -5.488 1 33.75 ? N NUT 202 A 1 
HETATM 34 C C12 NUT . . . C 3 11.07 -18.465 -3.171 1 31.38 ? C12 NUT 202 A 1 
HETATM 35 C C17 NUT . . . C 3 10.718 -18.78 -1.88 1 34.07 ? C17 NUT 202 A 1 
HETATM 36 C C16 NUT . . . C 3 11.622 -19.331 -1.008 1 35.07 ? C16 NUT 202 A 1 
HETATM 37 C C15 NUT . . . C 3 12.9 -19.552 -1.424 1 38.45 ? C15 NUT 202 A 1 
HETATM 38 CL CL NUT . . . C 3 13.985 -20.265 -0.274 1 41.83 ? CL NUT 202 A 1 
HETATM 39 C C14 NUT . . . C 3 13.303 -19.248 -2.701 1 36.98 ? C14 NUT 202 A 1 
HETATM 40 C C13 NUT . . . C 3 12.384 -18.679 -3.57 1 36.43 ? C13 NUT 202 A 1 
HETATM 41 H H1 NUT . . . C 3 6.928 -13.131 -6.328 1 54.55 ? H1 NUT 202 A 1 
HETATM 42 H H2 NUT . . . C 3 8.374 -12.689 -6.886 1 54.55 ? H2 NUT 202 A 1 
HETATM 43 H H3 NUT . . . C 3 6.524 -14.341 -9.77 1 61.56 ? H3 NUT 202 A 1 
HETATM 44 H H4 NUT . . . C 3 7.711 -16.253 -8.977 1 56.86 ? H4 NUT 202 A 1 
HETATM 45 H H5 NUT . . . C 3 6.132 -16.304 -8.638 1 56.86 ? H5 NUT 202 A 1 
HETATM 46 H H6 NUT . . . C 3 6.455 -15.752 -6.511 1 49.08 ? H6 NUT 202 A 1 
HETATM 47 H H7 NUT . . . C 3 7.731 -16.656 -6.789 1 49.08 ? H7 NUT 202 A 1 
HETATM 48 H H9 NUT . . . C 3 9.754 -18.494 -8.023 1 39.78 ? H9 NUT 202 A 1 
HETATM 49 H H10 NUT . . . C 3 10.098 -18.28 -10.298 1 40.16 ? H10 NUT 202 A 1 
HETATM 50 H H11 NUT . . . C 3 11.126 -12.812 -8.333 1 37.5 ? H11 NUT 202 A 1 
HETATM 51 H H12 NUT . . . C 3 11.62 -11.286 -6.595 1 34.56 ? H12 NUT 202 A 1 
HETATM 52 H H13 NUT . . . C 3 11.839 -12.491 -5.589 1 34.56 ? H13 NUT 202 A 1 
HETATM 53 H H14 NUT . . . C 3 10.398 -12.207 -6.178 1 34.56 ? H14 NUT 202 A 1 
HETATM 54 H H15 NUT . . . C 3 13.447 -14.082 -7.707 1 33.07 ? H15 NUT 202 A 1 
HETATM 55 H H16 NUT . . . C 3 13.6 -12.577 -7.23 1 33.07 ? H16 NUT 202 A 1 
HETATM 56 H H17 NUT . . . C 3 13.283 -12.896 -8.747 1 33.07 ? H17 NUT 202 A 1 
HETATM 57 H H18 NUT . . . C 3 11.511 -14.531 -9.761 1 38.46 ? H18 NUT 202 A 1 
HETATM 58 H H19 NUT . . . C 3 10.287 -17.962 -12.287 1 49.03 ? H19 NUT 202 A 1 
HETATM 59 H H20 NUT . . . C 3 11.855 -18.012 -12.055 1 49.03 ? H20 NUT 202 A 1 
HETATM 60 H H21 NUT . . . C 3 11.264 -17.233 -13.301 1 49.03 ? H21 NUT 202 A 1 
HETATM 61 H H22 NUT . . . C 3 9.063 -16.128 -3.274 1 34.52 ? H22 NUT 202 A 1 
HETATM 62 H H23 NUT . . . C 3 12.205 -15.445 -4.832 1 31.53 ? H23 NUT 202 A 1 
HETATM 63 H H24 NUT . . . C 3 14.006 -14.398 -3.8 1 32.15 ? H24 NUT 202 A 1 
HETATM 64 H H25 NUT . . . C 3 12.046 -14.479 -0.302 1 31.58 ? H25 NUT 202 A 1 
HETATM 65 H H26 NUT . . . C 3 10.261 -15.541 -1.327 1 33.25 ? H26 NUT 202 A 1 
HETATM 66 H H27 NUT . . . C 3 9.191 -18.268 -3.914 1 34.77 ? H27 NUT 202 A 1 
HETATM 67 H H30 NUT . . . C 3 9.837 -18.614 -1.588 1 34.07 ? H30 NUT 202 A 1 
HETATM 68 H H31 NUT . . . C 3 11.358 -19.56 -0.136 1 35.07 ? H31 NUT 202 A 1 
HETATM 69 H H32 NUT . . . C 3 14.183 -19.423 -2.977 1 36.98 ? H32 NUT 202 A 1 
HETATM 70 H H33 NUT . . . C 3 12.65 -18.466 -4.449 1 36.43 ? H33 NUT 202 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           356 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           70 
#