data_7C43 # _model_server_result.job_id 6-xM5Rg238l5RHuJpYW6mw _model_server_result.datetime_utc '2024-10-19 15:36:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7c43 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 7C43 # _exptl.entry_id 7C43 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7C43 _cell.length_a 49.73 _cell.length_b 77.73 _cell.length_c 99.301 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7C43 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 9 A SER 48 1_555 A N MSE 10 A MSE 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C MSE 10 A MSE 49 1_555 A N ILE 11 A ILE 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C ASP 86 A ASP 125 1_555 A N MSE 87 A MSE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C MSE 87 A MSE 126 1_555 A N GLN 88 A GLN 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C GLY 143 A GLY 182 1_555 A N MSE 144 A MSE 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 A C MSE 144 A MSE 183 1_555 A N GLY 145 A GLY 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C ALA 166 A ALA 205 1_555 A N MSE 167 A MSE 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 A C MSE 167 A MSE 206 1_555 A N THR 168 A THR 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? metalc ? metalc1 A OD2 ASP 41 A ASP 80 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc2 A OD1 ASP 41 A ASP 80 1_555 E MN MN . A MN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc3 A OE1 GLU 43 A GLU 82 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc4 A OD2 ASP 191 A ASP 230 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc5 A SG CYS 258 A CYS 297 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc6 A SG CYS 261 A CYS 300 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc7 A NE2 HIS 266 A HIS 305 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc8 A SG CYS 271 A CYS 310 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc9 A SG CYS 281 A CYS 320 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc10 A SG CYS 284 A CYS 323 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc11 A NE2 HIS 289 A HIS 328 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc12 A SG CYS 294 A CYS 333 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc13 D MN MN . A MN 403 1_555 F O1P AMP . A AMP 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc14 E MN MN . A MN 404 1_555 F O3P AMP . A AMP 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc15 E MN MN . A MN 404 1_555 F O1P AMP . A AMP 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc16 E MN MN . A MN 404 1_555 G O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc17 E MN MN . A MN 404 1_555 G O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7C43 _atom_sites.fract_transf_matrix[1][1] 0.020109 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012865 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01007 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 2 ZN ZN . C 2 ZN A 1 402 3 ZN ZN . D 3 MN A 1 403 1 MN MN . E 3 MN A 1 404 2 MN MN . F 4 AMP A 1 405 1 AMP A . G 5 HOH A 1 501 2 HOH HOH . G 5 HOH A 2 502 27 HOH HOH . G 5 HOH A 3 503 15 HOH HOH . G 5 HOH A 4 504 13 HOH HOH . G 5 HOH A 5 505 1 HOH HOH . G 5 HOH A 6 506 4 HOH HOH . G 5 HOH A 7 507 17 HOH HOH . G 5 HOH A 8 508 14 HOH HOH . G 5 HOH A 9 509 10 HOH HOH . G 5 HOH A 10 510 12 HOH HOH . G 5 HOH A 11 511 24 HOH HOH . G 5 HOH A 12 512 11 HOH HOH . G 5 HOH A 13 513 21 HOH HOH . G 5 HOH A 14 514 3 HOH HOH . G 5 HOH A 15 515 25 HOH HOH . G 5 HOH A 16 516 5 HOH HOH . G 5 HOH A 17 517 26 HOH HOH . G 5 HOH A 18 518 22 HOH HOH . G 5 HOH A 19 519 8 HOH HOH . G 5 HOH A 20 520 18 HOH HOH . G 5 HOH A 21 521 9 HOH HOH . G 5 HOH A 22 522 16 HOH HOH . G 5 HOH A 23 523 19 HOH HOH . G 5 HOH A 24 524 6 HOH HOH . G 5 HOH A 25 525 20 HOH HOH . G 5 HOH A 26 526 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . F 4 15.818 86.61 96.924 1 35.54 ? P AMP 405 A 1 HETATM 2 O O1P AMP . . . F 4 17.228 86.19 97.178 1 31.63 ? O1P AMP 405 A 1 HETATM 3 O O2P AMP . . . F 4 15.717 87.978 97.507 1 34.6 ? O2P AMP 405 A 1 HETATM 4 O O3P AMP . . . F 4 14.91 85.543 97.416 1 33.96 ? O3P AMP 405 A 1 HETATM 5 O O5' AMP . . . F 4 15.63 86.709 95.334 1 36.83 ? O5' AMP 405 A 1 HETATM 6 C C5' AMP . . . F 4 15.9 85.57 94.484 1 39.81 ? C5' AMP 405 A 1 HETATM 7 C C4' AMP . . . F 4 15.504 85.765 93.029 1 40.33 ? C4' AMP 405 A 1 HETATM 8 O O4' AMP . . . F 4 14.067 85.61 92.868 1 43.51 ? O4' AMP 405 A 1 HETATM 9 C C3' AMP . . . F 4 15.828 87.082 92.33 1 39.91 ? C3' AMP 405 A 1 HETATM 10 O O3' AMP . . . F 4 17.169 87.174 91.87 1 37.5 ? O3' AMP 405 A 1 HETATM 11 C C2' AMP . . . F 4 14.842 87.05 91.169 1 42.24 ? C2' AMP 405 A 1 HETATM 12 O O2' AMP . . . F 4 15.164 86.21 90.075 1 43.94 ? O2' AMP 405 A 1 HETATM 13 C C1' AMP . . . F 4 13.601 86.492 91.862 1 44.33 ? C1' AMP 405 A 1 HETATM 14 N N9 AMP . . . F 4 12.825 87.543 92.51 1 48.55 ? N9 AMP 405 A 1 HETATM 15 C C8 AMP . . . F 4 13.026 88.082 93.758 1 51.11 ? C8 AMP 405 A 1 HETATM 16 N N7 AMP . . . F 4 12.181 89.035 94.065 1 50.82 ? N7 AMP 405 A 1 HETATM 17 C C5 AMP . . . F 4 11.368 89.132 92.944 1 53.71 ? C5 AMP 405 A 1 HETATM 18 C C6 AMP . . . F 4 10.271 89.956 92.642 1 52.28 ? C6 AMP 405 A 1 HETATM 19 N N6 AMP . . . F 4 9.787 90.874 93.479 1 53.11 ? N6 AMP 405 A 1 HETATM 20 N N1 AMP . . . F 4 9.681 89.8 91.436 1 50.15 ? N1 AMP 405 A 1 HETATM 21 C C2 AMP . . . F 4 10.168 88.876 90.597 1 50.65 ? C2 AMP 405 A 1 HETATM 22 N N3 AMP . . . F 4 11.197 88.045 90.766 1 53.5 ? N3 AMP 405 A 1 HETATM 23 C C4 AMP . . . F 4 11.758 88.224 91.976 1 50.03 ? C4 AMP 405 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 23 #