data_7C5D
#
_model_server_result.job_id            PaVvtsaJV8b1dAiDVM8LdQ 
_model_server_result.datetime_utc      '2024-11-04 20:31:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7c5d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    7C5D 
#
_exptl.entry_id    7C5D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7C5D 
_cell.length_a            60.737 
_cell.length_b            74.941 
_cell.length_c            98.418 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7C5D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,G,I 1 1 
B,D,E,F,H,J 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     7C5D 
_atom_sites.fract_transf_matrix[1][1]    0.016464 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013344 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010161 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL B 1 301 1 GOL GOL . 
F 3 GOL B 1 302 2 GOL GOL . 
G 4 HOH A 1 301 102 HOH HOH . 
G 4 HOH A 2 302 46 HOH HOH . 
G 4 HOH A 3 303 141 HOH HOH . 
G 4 HOH A 4 304 58 HOH HOH . 
G 4 HOH A 5 305 127 HOH HOH . 
G 4 HOH A 6 306 13 HOH HOH . 
G 4 HOH A 7 307 37 HOH HOH . 
G 4 HOH A 8 308 19 HOH HOH . 
G 4 HOH A 9 309 67 HOH HOH . 
G 4 HOH A 10 310 118 HOH HOH . 
G 4 HOH A 11 311 48 HOH HOH . 
G 4 HOH A 12 312 5 HOH HOH . 
G 4 HOH A 13 313 24 HOH HOH . 
G 4 HOH A 14 314 111 HOH HOH . 
G 4 HOH A 15 315 88 HOH HOH . 
G 4 HOH A 16 316 121 HOH HOH . 
G 4 HOH A 17 317 43 HOH HOH . 
G 4 HOH A 18 318 62 HOH HOH . 
G 4 HOH A 19 319 42 HOH HOH . 
G 4 HOH A 20 320 93 HOH HOH . 
G 4 HOH A 21 321 78 HOH HOH . 
G 4 HOH A 22 322 148 HOH HOH . 
G 4 HOH A 23 323 34 HOH HOH . 
G 4 HOH A 24 324 85 HOH HOH . 
G 4 HOH A 25 325 12 HOH HOH . 
G 4 HOH A 26 326 76 HOH HOH . 
G 4 HOH A 27 327 39 HOH HOH . 
G 4 HOH A 28 328 32 HOH HOH . 
G 4 HOH A 29 329 4 HOH HOH . 
G 4 HOH A 30 330 3 HOH HOH . 
G 4 HOH A 31 331 6 HOH HOH . 
G 4 HOH A 32 332 31 HOH HOH . 
G 4 HOH A 33 333 74 HOH HOH . 
G 4 HOH A 34 334 25 HOH HOH . 
G 4 HOH A 35 335 138 HOH HOH . 
G 4 HOH A 36 336 15 HOH HOH . 
G 4 HOH A 37 337 55 HOH HOH . 
G 4 HOH A 38 338 71 HOH HOH . 
G 4 HOH A 39 339 2 HOH HOH . 
G 4 HOH A 40 340 64 HOH HOH . 
G 4 HOH A 41 341 11 HOH HOH . 
G 4 HOH A 42 342 86 HOH HOH . 
G 4 HOH A 43 343 23 HOH HOH . 
G 4 HOH A 44 344 110 HOH HOH . 
G 4 HOH A 45 345 29 HOH HOH . 
G 4 HOH A 46 346 30 HOH HOH . 
G 4 HOH A 47 347 130 HOH HOH . 
G 4 HOH A 48 348 69 HOH HOH . 
G 4 HOH A 49 349 41 HOH HOH . 
G 4 HOH A 50 350 77 HOH HOH . 
G 4 HOH A 51 351 38 HOH HOH . 
G 4 HOH A 52 352 83 HOH HOH . 
G 4 HOH A 53 353 56 HOH HOH . 
G 4 HOH A 54 354 57 HOH HOH . 
G 4 HOH A 55 355 70 HOH HOH . 
G 4 HOH A 56 356 142 HOH HOH . 
G 4 HOH A 57 357 51 HOH HOH . 
G 4 HOH A 58 358 104 HOH HOH . 
G 4 HOH A 59 359 27 HOH HOH . 
G 4 HOH A 60 360 18 HOH HOH . 
G 4 HOH A 61 361 45 HOH HOH . 
G 4 HOH A 62 362 117 HOH HOH . 
G 4 HOH A 63 363 125 HOH HOH . 
G 4 HOH A 64 364 95 HOH HOH . 
G 4 HOH A 65 365 134 HOH HOH . 
G 4 HOH A 66 366 113 HOH HOH . 
G 4 HOH A 67 367 98 HOH HOH . 
G 4 HOH A 68 368 66 HOH HOH . 
G 4 HOH A 69 369 147 HOH HOH . 
G 4 HOH A 70 370 132 HOH HOH . 
G 4 HOH A 71 371 143 HOH HOH . 
G 4 HOH A 72 372 128 HOH HOH . 
H 4 HOH B 1 401 109 HOH HOH . 
H 4 HOH B 2 402 72 HOH HOH . 
H 4 HOH B 3 403 119 HOH HOH . 
H 4 HOH B 4 404 52 HOH HOH . 
H 4 HOH B 5 405 136 HOH HOH . 
H 4 HOH B 6 406 103 HOH HOH . 
H 4 HOH B 7 407 84 HOH HOH . 
H 4 HOH B 8 408 108 HOH HOH . 
H 4 HOH B 9 409 60 HOH HOH . 
H 4 HOH B 10 410 21 HOH HOH . 
H 4 HOH B 11 411 10 HOH HOH . 
H 4 HOH B 12 412 94 HOH HOH . 
H 4 HOH B 13 413 114 HOH HOH . 
H 4 HOH B 14 414 144 HOH HOH . 
H 4 HOH B 15 415 1 HOH HOH . 
H 4 HOH B 16 416 54 HOH HOH . 
H 4 HOH B 17 417 89 HOH HOH . 
H 4 HOH B 18 418 120 HOH HOH . 
H 4 HOH B 19 419 99 HOH HOH . 
H 4 HOH B 20 420 124 HOH HOH . 
H 4 HOH B 21 421 97 HOH HOH . 
H 4 HOH B 22 422 101 HOH HOH . 
H 4 HOH B 23 423 20 HOH HOH . 
H 4 HOH B 24 424 16 HOH HOH . 
H 4 HOH B 25 425 26 HOH HOH . 
H 4 HOH B 26 426 47 HOH HOH . 
H 4 HOH B 27 427 22 HOH HOH . 
H 4 HOH B 28 428 33 HOH HOH . 
H 4 HOH B 29 429 8 HOH HOH . 
H 4 HOH B 30 430 96 HOH HOH . 
H 4 HOH B 31 431 7 HOH HOH . 
H 4 HOH B 32 432 44 HOH HOH . 
H 4 HOH B 33 433 65 HOH HOH . 
H 4 HOH B 34 434 82 HOH HOH . 
H 4 HOH B 35 435 107 HOH HOH . 
H 4 HOH B 36 436 28 HOH HOH . 
H 4 HOH B 37 437 106 HOH HOH . 
H 4 HOH B 38 438 122 HOH HOH . 
H 4 HOH B 39 439 35 HOH HOH . 
H 4 HOH B 40 440 81 HOH HOH . 
H 4 HOH B 41 441 49 HOH HOH . 
H 4 HOH B 42 442 73 HOH HOH . 
H 4 HOH B 43 443 146 HOH HOH . 
H 4 HOH B 44 444 63 HOH HOH . 
H 4 HOH B 45 445 50 HOH HOH . 
H 4 HOH B 46 446 79 HOH HOH . 
H 4 HOH B 47 447 105 HOH HOH . 
H 4 HOH B 48 448 140 HOH HOH . 
H 4 HOH B 49 449 61 HOH HOH . 
H 4 HOH B 50 450 9 HOH HOH . 
H 4 HOH B 51 451 137 HOH HOH . 
H 4 HOH B 52 452 129 HOH HOH . 
H 4 HOH B 53 453 115 HOH HOH . 
H 4 HOH B 54 454 59 HOH HOH . 
H 4 HOH B 55 455 75 HOH HOH . 
H 4 HOH B 56 456 87 HOH HOH . 
H 4 HOH B 57 457 112 HOH HOH . 
H 4 HOH B 58 458 145 HOH HOH . 
H 4 HOH B 59 459 92 HOH HOH . 
H 4 HOH B 60 460 80 HOH HOH . 
H 4 HOH B 61 461 90 HOH HOH . 
H 4 HOH B 62 462 116 HOH HOH . 
H 4 HOH B 63 463 133 HOH HOH . 
I 4 HOH C 1 401 91 HOH HOH . 
I 4 HOH C 2 402 123 HOH HOH . 
I 4 HOH C 3 403 139 HOH HOH . 
J 4 HOH D 1 401 126 HOH HOH . 
J 4 HOH D 2 402 17 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 3 -4.385 50.294 -15.402 1 49.79 ? C1 GOL 301 B 1 
HETATM 2 O O1 GOL . . . E 3 -4.305 51.422 -14.543 1 42.02 ? O1 GOL 301 B 1 
HETATM 3 C C2 GOL . . . E 3 -3.363 50.362 -16.514 1 50.84 ? C2 GOL 301 B 1 
HETATM 4 O O2 GOL . . . E 3 -2.098 50.732 -15.986 1 37.85 ? O2 GOL 301 B 1 
HETATM 5 C C3 GOL . . . E 3 -3.256 49.108 -17.353 1 37.1 ? C3 GOL 301 B 1 
HETATM 6 O O3 GOL . . . E 3 -2.576 49.366 -18.577 1 50.61 ? O3 GOL 301 B 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#