data_7C7J # _model_server_result.job_id FPXamQRItnstEMZHUosAFw _model_server_result.datetime_utc '2024-11-21 23:47:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7c7j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":201}' # _entry.id 7C7J # _exptl.entry_id 7C7J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7C7J _cell.length_a 58.215 _cell.length_b 191.926 _cell.length_c 48.876 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7C7J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,J,L 1 1 B,D,H,I,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 G MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 G MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc3 A OD1 ASN 155 A ASN 155 1_555 F CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc4 A OE1 GLU 156 A GLU 156 1_555 F CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? metalc ? metalc5 A OE2 GLU 156 A GLU 156 1_555 F CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc6 E O1G GTP . A GTP 201 1_555 G MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc7 E O3G GTP . A GTP 201 1_555 G MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.994 ? metalc ? metalc8 E O2B GTP . A GTP 201 1_555 G MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc9 F CA CA . A CA 202 1_555 J O HOH . A HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc10 F CA CA . A CA 202 1_555 J O HOH . A HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc11 F CA CA . A CA 202 1_555 B OD1 ASN 155 B ASN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc12 F CA CA . A CA 202 1_555 B OE1 GLU 156 B GLU 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc13 F CA CA . A CA 202 1_555 B OE2 GLU 156 B GLU 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.911 ? metalc ? metalc14 B OG SER 17 B SER 17 1_555 I MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc15 B OG1 THR 35 B THR 35 1_555 I MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc16 H O1G GTP . B GTP 201 1_555 I MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc17 H O2B GTP . B GTP 201 1_555 I MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc18 H O2A GTP . B GTP 201 1_555 I MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 7C7J _atom_sites.fract_transf_matrix[1][1] 0.017178 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00521 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02046 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GTP A 1 201 201 GTP GTP . F 4 CA A 1 202 301 CA CA . G 5 MG A 1 203 401 MG MG . H 3 GTP B 1 201 201 GTP GTP . I 5 MG B 1 202 301 MG MG . J 6 HOH A 1 301 53 HOH HOH . J 6 HOH A 2 302 28 HOH HOH . J 6 HOH A 3 303 3 HOH HOH . J 6 HOH A 4 304 83 HOH HOH . J 6 HOH A 5 305 78 HOH HOH . J 6 HOH A 6 306 63 HOH HOH . J 6 HOH A 7 307 68 HOH HOH . J 6 HOH A 8 308 17 HOH HOH . J 6 HOH A 9 309 13 HOH HOH . J 6 HOH A 10 310 65 HOH HOH . J 6 HOH A 11 311 16 HOH HOH . J 6 HOH A 12 312 20 HOH HOH . J 6 HOH A 13 313 44 HOH HOH . J 6 HOH A 14 314 39 HOH HOH . J 6 HOH A 15 315 34 HOH HOH . J 6 HOH A 16 316 1 HOH HOH . J 6 HOH A 17 317 25 HOH HOH . J 6 HOH A 18 318 2 HOH HOH . J 6 HOH A 19 319 80 HOH HOH . J 6 HOH A 20 320 15 HOH HOH . J 6 HOH A 21 321 52 HOH HOH . J 6 HOH A 22 322 43 HOH HOH . J 6 HOH A 23 323 90 HOH HOH . J 6 HOH A 24 324 91 HOH HOH . J 6 HOH A 25 325 72 HOH HOH . J 6 HOH A 26 326 87 HOH HOH . J 6 HOH A 27 327 60 HOH HOH . J 6 HOH A 28 328 67 HOH HOH . J 6 HOH A 29 329 85 HOH HOH . J 6 HOH A 30 330 62 HOH HOH . K 6 HOH B 1 301 21 HOH HOH . K 6 HOH B 2 302 38 HOH HOH . K 6 HOH B 3 303 10 HOH HOH . K 6 HOH B 4 304 4 HOH HOH . K 6 HOH B 5 305 32 HOH HOH . K 6 HOH B 6 306 6 HOH HOH . K 6 HOH B 7 307 5 HOH HOH . K 6 HOH B 8 308 48 HOH HOH . K 6 HOH B 9 309 19 HOH HOH . K 6 HOH B 10 310 11 HOH HOH . K 6 HOH B 11 311 46 HOH HOH . K 6 HOH B 12 312 71 HOH HOH . K 6 HOH B 13 313 42 HOH HOH . K 6 HOH B 14 314 55 HOH HOH . K 6 HOH B 15 315 36 HOH HOH . K 6 HOH B 16 316 14 HOH HOH . K 6 HOH B 17 317 26 HOH HOH . K 6 HOH B 18 318 61 HOH HOH . K 6 HOH B 19 319 31 HOH HOH . K 6 HOH B 20 320 51 HOH HOH . K 6 HOH B 21 321 29 HOH HOH . K 6 HOH B 22 322 75 HOH HOH . K 6 HOH B 23 323 49 HOH HOH . K 6 HOH B 24 324 79 HOH HOH . K 6 HOH B 25 325 82 HOH HOH . K 6 HOH B 26 326 45 HOH HOH . K 6 HOH B 27 327 77 HOH HOH . K 6 HOH B 28 328 89 HOH HOH . K 6 HOH B 29 329 22 HOH HOH . K 6 HOH B 30 330 73 HOH HOH . K 6 HOH B 31 331 41 HOH HOH . L 6 HOH C 1 101 69 HOH HOH . L 6 HOH C 2 102 57 HOH HOH . L 6 HOH C 3 103 9 HOH HOH . L 6 HOH C 4 104 27 HOH HOH . L 6 HOH C 5 105 33 HOH HOH . L 6 HOH C 6 106 7 HOH HOH . L 6 HOH C 7 107 18 HOH HOH . L 6 HOH C 8 108 47 HOH HOH . L 6 HOH C 9 109 54 HOH HOH . L 6 HOH C 10 110 56 HOH HOH . L 6 HOH C 11 111 50 HOH HOH . L 6 HOH C 12 112 23 HOH HOH . L 6 HOH C 13 113 35 HOH HOH . L 6 HOH C 14 114 84 HOH HOH . M 6 HOH D 1 101 24 HOH HOH . M 6 HOH D 2 102 58 HOH HOH . M 6 HOH D 3 103 12 HOH HOH . M 6 HOH D 4 104 8 HOH HOH . M 6 HOH D 5 105 59 HOH HOH . M 6 HOH D 6 106 40 HOH HOH . M 6 HOH D 7 107 70 HOH HOH . M 6 HOH D 8 108 86 HOH HOH . M 6 HOH D 9 109 30 HOH HOH . M 6 HOH D 10 110 37 HOH HOH . M 6 HOH D 11 111 76 HOH HOH . M 6 HOH D 12 112 64 HOH HOH . M 6 HOH D 13 113 88 HOH HOH . M 6 HOH D 14 114 74 HOH HOH . M 6 HOH D 15 115 66 HOH HOH . M 6 HOH D 16 116 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . H 3 6.303 -18.815 32.965 1 87.63 ? PG GTP 201 B 1 HETATM 2 O O1G GTP . . . H 3 6.653 -19.795 31.827 1 62.17 ? O1G GTP 201 B 1 HETATM 3 O O2G GTP . . . H 3 7.464 -17.839 33.12 1 89.82 -1 O2G GTP 201 B 1 HETATM 4 O O3G GTP . . . H 3 6.184 -19.534 34.295 1 97.85 ? O3G GTP 201 B 1 HETATM 5 O O3B GTP . . . H 3 4.888 -18.008 32.73 1 52.24 ? O3B GTP 201 B 1 HETATM 6 P PB GTP . . . H 3 4.213 -17.862 31.256 1 25.16 ? PB GTP 201 B 1 HETATM 7 O O1B GTP . . . H 3 4.683 -16.576 30.623 1 30.63 -1 O1B GTP 201 B 1 HETATM 8 O O2B GTP . . . H 3 4.605 -19.066 30.425 1 24.85 ? O2B GTP 201 B 1 HETATM 9 O O3A GTP . . . H 3 2.606 -17.85 31.368 1 32.62 ? O3A GTP 201 B 1 HETATM 10 P PA GTP . . . H 3 1.772 -19.173 30.933 1 24.89 ? PA GTP 201 B 1 HETATM 11 O O1A GTP . . . H 3 1.855 -19.385 29.451 1 29.64 -1 O1A GTP 201 B 1 HETATM 12 O O2A GTP . . . H 3 2.202 -20.404 31.729 1 28.3 ? O2A GTP 201 B 1 HETATM 13 O O5' GTP . . . H 3 0.242 -18.852 31.319 1 30.69 ? O5' GTP 201 B 1 HETATM 14 C C5' GTP . . . H 3 -0.1 -17.836 32.231 1 24.36 ? C5' GTP 201 B 1 HETATM 15 C C4' GTP . . . H 3 -1.593 -17.938 32.521 1 22.88 ? C4' GTP 201 B 1 HETATM 16 O O4' GTP . . . H 3 -2.281 -17.075 31.635 1 32.69 ? O4' GTP 201 B 1 HETATM 17 C C3' GTP . . . H 3 -2.114 -19.332 32.23 1 26.17 ? C3' GTP 201 B 1 HETATM 18 O O3' GTP . . . H 3 -3.128 -19.52 33.17 1 23.46 ? O3' GTP 201 B 1 HETATM 19 C C2' GTP . . . H 3 -2.744 -19.223 30.849 1 30.51 ? C2' GTP 201 B 1 HETATM 20 O O2' GTP . . . H 3 -3.858 -20.037 30.597 1 30.84 ? O2' GTP 201 B 1 HETATM 21 C C1' GTP . . . H 3 -3.201 -17.79 30.812 1 27.93 ? C1' GTP 201 B 1 HETATM 22 N N9 GTP . . . H 3 -3.058 -17.31 29.44 1 28.85 ? N9 GTP 201 B 1 HETATM 23 C C8 GTP . . . H 3 -1.964 -17.457 28.629 1 27.31 ? C8 GTP 201 B 1 HETATM 24 N N7 GTP . . . H 3 -2.245 -16.851 27.464 1 24.88 ? N7 GTP 201 B 1 HETATM 25 C C5 GTP . . . H 3 -3.491 -16.33 27.523 1 26.04 ? C5 GTP 201 B 1 HETATM 26 C C6 GTP . . . H 3 -4.273 -15.599 26.632 1 22.17 ? C6 GTP 201 B 1 HETATM 27 O O6 GTP . . . H 3 -3.878 -15.311 25.522 1 27.23 ? O6 GTP 201 B 1 HETATM 28 N N1 GTP . . . H 3 -5.525 -15.197 26.991 1 32.11 ? N1 GTP 201 B 1 HETATM 29 C C2 GTP . . . H 3 -6.02 -15.498 28.243 1 26.26 ? C2 GTP 201 B 1 HETATM 30 N N2 GTP . . . H 3 -7.256 -15.106 28.592 1 21.26 ? N2 GTP 201 B 1 HETATM 31 N N3 GTP . . . H 3 -5.236 -16.214 29.121 1 24.61 ? N3 GTP 201 B 1 HETATM 32 C C4 GTP . . . H 3 -4.002 -16.613 28.766 1 24.14 ? C4 GTP 201 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #