data_7C7M # _model_server_result.job_id g94p68KNYisHxfG_Yuix9w _model_server_result.datetime_utc '2025-02-20 11:50:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7c7m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 7C7M # _exptl.entry_id 7C7M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7C7M _cell.length_a 45.522 _cell.length_b 92.142 _cell.length_c 56.669 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7C7M _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 51 A LEU 39 1_555 A N MSE 52 A MSE 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C MSE 52 A MSE 40 1_555 A N ASP 53 A ASP 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale3 A C PRO 145 A PRO 133 1_555 A N MSE 146 A MSE 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 A C MSE 146 A MSE 134 1_555 A N THR 147 A THR 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale5 A C ALA 231 A ALA 219 1_555 A N MSE 232 A MSE 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale6 A C MSE 232 A MSE 220 1_555 A N ARG 233 A ARG 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 A C HIS 260 A HIS 248 1_555 A N MSE 261 A MSE 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale8 A C MSE 261 A MSE 249 1_555 A N ARG 262 A ARG 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 286 n n N HN1 SAM sing 287 n n N HN2 SAM sing 288 n n CA C SAM sing 289 n n CA CB SAM sing 290 n n CA HA SAM sing 291 n n C O SAM doub 292 n n C OXT SAM sing 293 n n CB CG SAM sing 294 n n CB HB1 SAM sing 295 n n CB HB2 SAM sing 296 n n CG SD SAM sing 297 n n CG HG1 SAM sing 298 n n CG HG2 SAM sing 299 n n SD CE SAM sing 300 n n SD C5' SAM sing 301 n n CE HE1 SAM sing 302 n n CE HE2 SAM sing 303 n n CE HE3 SAM sing 304 n n C5' C4' SAM sing 305 n n C5' "H5'1" SAM sing 306 n n C5' "H5'2" SAM sing 307 n n C4' O4' SAM sing 308 n n C4' C3' SAM sing 309 n n C4' H4' SAM sing 310 n n O4' C1' SAM sing 311 n n C3' O3' SAM sing 312 n n C3' C2' SAM sing 313 n n C3' H3' SAM sing 314 n n O3' HO3' SAM sing 315 n n C2' O2' SAM sing 316 n n C2' C1' SAM sing 317 n n C2' H2' SAM sing 318 n n O2' HO2' SAM sing 319 n n C1' N9 SAM sing 320 n n C1' H1' SAM sing 321 n n N9 C8 SAM sing 322 n y N9 C4 SAM sing 323 n y C8 N7 SAM doub 324 n y C8 H8 SAM sing 325 n n N7 C5 SAM sing 326 n y C5 C6 SAM sing 327 n y C5 C4 SAM doub 328 n y C6 N6 SAM sing 329 n n C6 N1 SAM doub 330 n y N6 HN61 SAM sing 331 n n N6 HN62 SAM sing 332 n n N1 C2 SAM sing 333 n y C2 N3 SAM doub 334 n y C2 H2 SAM sing 335 n n N3 C4 SAM sing 336 n y # _atom_sites.entry_id 7C7M _atom_sites.fract_transf_matrix[1][1] 0.021967 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010853 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017646 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 301 EDO EDO . C 2 EDO A 1 302 401 EDO EDO . D 3 SAM A 1 303 1 SAM SAM . E 4 HOH A 1 401 143 HOH HOH . E 4 HOH A 2 402 25 HOH HOH . E 4 HOH A 3 403 116 HOH HOH . E 4 HOH A 4 404 150 HOH HOH . E 4 HOH A 5 405 10 HOH HOH . E 4 HOH A 6 406 36 HOH HOH . E 4 HOH A 7 407 33 HOH HOH . E 4 HOH A 8 408 115 HOH HOH . E 4 HOH A 9 409 144 HOH HOH . E 4 HOH A 10 410 88 HOH HOH . E 4 HOH A 11 411 61 HOH HOH . E 4 HOH A 12 412 29 HOH HOH . E 4 HOH A 13 413 40 HOH HOH . E 4 HOH A 14 414 136 HOH HOH . E 4 HOH A 15 415 120 HOH HOH . E 4 HOH A 16 416 103 HOH HOH . E 4 HOH A 17 417 2 HOH HOH . E 4 HOH A 18 418 84 HOH HOH . E 4 HOH A 19 419 138 HOH HOH . E 4 HOH A 20 420 74 HOH HOH . E 4 HOH A 21 421 5 HOH HOH . E 4 HOH A 22 422 142 HOH HOH . E 4 HOH A 23 423 83 HOH HOH . E 4 HOH A 24 424 123 HOH HOH . E 4 HOH A 25 425 63 HOH HOH . E 4 HOH A 26 426 151 HOH HOH . E 4 HOH A 27 427 111 HOH HOH . E 4 HOH A 28 428 1 HOH HOH . E 4 HOH A 29 429 99 HOH HOH . E 4 HOH A 30 430 53 HOH HOH . E 4 HOH A 31 431 77 HOH HOH . E 4 HOH A 32 432 69 HOH HOH . E 4 HOH A 33 433 21 HOH HOH . E 4 HOH A 34 434 92 HOH HOH . E 4 HOH A 35 435 102 HOH HOH . E 4 HOH A 36 436 126 HOH HOH . E 4 HOH A 37 437 67 HOH HOH . E 4 HOH A 38 438 42 HOH HOH . E 4 HOH A 39 439 60 HOH HOH . E 4 HOH A 40 440 72 HOH HOH . E 4 HOH A 41 441 122 HOH HOH . E 4 HOH A 42 442 51 HOH HOH . E 4 HOH A 43 443 3 HOH HOH . E 4 HOH A 44 444 132 HOH HOH . E 4 HOH A 45 445 55 HOH HOH . E 4 HOH A 46 446 48 HOH HOH . E 4 HOH A 47 447 76 HOH HOH . E 4 HOH A 48 448 19 HOH HOH . E 4 HOH A 49 449 7 HOH HOH . E 4 HOH A 50 450 37 HOH HOH . E 4 HOH A 51 451 85 HOH HOH . E 4 HOH A 52 452 81 HOH HOH . E 4 HOH A 53 453 45 HOH HOH . E 4 HOH A 54 454 64 HOH HOH . E 4 HOH A 55 455 70 HOH HOH . E 4 HOH A 56 456 4 HOH HOH . E 4 HOH A 57 457 71 HOH HOH . E 4 HOH A 58 458 104 HOH HOH . E 4 HOH A 59 459 118 HOH HOH . E 4 HOH A 60 460 39 HOH HOH . E 4 HOH A 61 461 35 HOH HOH . E 4 HOH A 62 462 57 HOH HOH . E 4 HOH A 63 463 9 HOH HOH . E 4 HOH A 64 464 8 HOH HOH . E 4 HOH A 65 465 27 HOH HOH . E 4 HOH A 66 466 44 HOH HOH . E 4 HOH A 67 467 97 HOH HOH . E 4 HOH A 68 468 145 HOH HOH . E 4 HOH A 69 469 109 HOH HOH . E 4 HOH A 70 470 101 HOH HOH . E 4 HOH A 71 471 16 HOH HOH . E 4 HOH A 72 472 94 HOH HOH . E 4 HOH A 73 473 26 HOH HOH . E 4 HOH A 74 474 20 HOH HOH . E 4 HOH A 75 475 87 HOH HOH . E 4 HOH A 76 476 125 HOH HOH . E 4 HOH A 77 477 28 HOH HOH . E 4 HOH A 78 478 47 HOH HOH . E 4 HOH A 79 479 73 HOH HOH . E 4 HOH A 80 480 22 HOH HOH . E 4 HOH A 81 481 58 HOH HOH . E 4 HOH A 82 482 135 HOH HOH . E 4 HOH A 83 483 152 HOH HOH . E 4 HOH A 84 484 80 HOH HOH . E 4 HOH A 85 485 112 HOH HOH . E 4 HOH A 86 486 66 HOH HOH . E 4 HOH A 87 487 30 HOH HOH . E 4 HOH A 88 488 14 HOH HOH . E 4 HOH A 89 489 13 HOH HOH . E 4 HOH A 90 490 68 HOH HOH . E 4 HOH A 91 491 41 HOH HOH . E 4 HOH A 92 492 149 HOH HOH . E 4 HOH A 93 493 114 HOH HOH . E 4 HOH A 94 494 15 HOH HOH . E 4 HOH A 95 495 105 HOH HOH . E 4 HOH A 96 496 43 HOH HOH . E 4 HOH A 97 497 93 HOH HOH . E 4 HOH A 98 498 46 HOH HOH . E 4 HOH A 99 499 12 HOH HOH . E 4 HOH A 100 500 23 HOH HOH . E 4 HOH A 101 501 113 HOH HOH . E 4 HOH A 102 502 96 HOH HOH . E 4 HOH A 103 503 90 HOH HOH . E 4 HOH A 104 504 54 HOH HOH . E 4 HOH A 105 505 141 HOH HOH . E 4 HOH A 106 506 89 HOH HOH . E 4 HOH A 107 507 127 HOH HOH . E 4 HOH A 108 508 110 HOH HOH . E 4 HOH A 109 509 148 HOH HOH . E 4 HOH A 110 510 78 HOH HOH . E 4 HOH A 111 511 108 HOH HOH . E 4 HOH A 112 512 56 HOH HOH . E 4 HOH A 113 513 146 HOH HOH . E 4 HOH A 114 514 86 HOH HOH . E 4 HOH A 115 515 11 HOH HOH . E 4 HOH A 116 516 107 HOH HOH . E 4 HOH A 117 517 34 HOH HOH . E 4 HOH A 118 518 24 HOH HOH . E 4 HOH A 119 519 32 HOH HOH . E 4 HOH A 120 520 128 HOH HOH . E 4 HOH A 121 521 49 HOH HOH . E 4 HOH A 122 522 133 HOH HOH . E 4 HOH A 123 523 140 HOH HOH . E 4 HOH A 124 524 91 HOH HOH . E 4 HOH A 125 525 52 HOH HOH . E 4 HOH A 126 526 119 HOH HOH . E 4 HOH A 127 527 147 HOH HOH . E 4 HOH A 128 528 82 HOH HOH . E 4 HOH A 129 529 134 HOH HOH . E 4 HOH A 130 530 50 HOH HOH . E 4 HOH A 131 531 100 HOH HOH . E 4 HOH A 132 532 38 HOH HOH . E 4 HOH A 133 533 62 HOH HOH . E 4 HOH A 134 534 98 HOH HOH . E 4 HOH A 135 535 79 HOH HOH . E 4 HOH A 136 536 106 HOH HOH . E 4 HOH A 137 537 6 HOH HOH . E 4 HOH A 138 538 117 HOH HOH . E 4 HOH A 139 539 17 HOH HOH . E 4 HOH A 140 540 129 HOH HOH . E 4 HOH A 141 541 131 HOH HOH . E 4 HOH A 142 542 95 HOH HOH . E 4 HOH A 143 543 130 HOH HOH . E 4 HOH A 144 544 121 HOH HOH . E 4 HOH A 145 545 18 HOH HOH . E 4 HOH A 146 546 124 HOH HOH . E 4 HOH A 147 547 137 HOH HOH . E 4 HOH A 148 548 65 HOH HOH . E 4 HOH A 149 549 75 HOH HOH . E 4 HOH A 150 550 139 HOH HOH . E 4 HOH A 151 551 59 HOH HOH . E 4 HOH A 152 552 153 HOH HOH . E 4 HOH A 153 553 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . D 3 17.922 23.191 -15.738 1 32.71 ? N SAM 303 A 1 HETATM 2 C CA SAM . . . D 3 16.741 22.536 -16.248 1 30.57 ? CA SAM 303 A 1 HETATM 3 C C SAM . . . D 3 15.527 22.559 -15.334 1 32.74 ? C SAM 303 A 1 HETATM 4 O O SAM . . . D 3 15.767 22.476 -14.131 1 33.69 ? O SAM 303 A 1 HETATM 5 O OXT SAM . . . D 3 14.335 22.644 -15.804 1 30.33 ? OXT SAM 303 A 1 HETATM 6 C CB SAM . . . D 3 17.177 21.113 -16.57 1 28.33 ? CB SAM 303 A 1 HETATM 7 C CG SAM . . . D 3 17.942 21.078 -17.883 1 25.65 ? CG SAM 303 A 1 HETATM 8 S SD SAM . . . D 3 17.096 21.623 -19.221 1 24.65 ? SD SAM 303 A 1 HETATM 9 C CE SAM . . . D 3 16.573 23.165 -19.25 1 29.63 ? CE SAM 303 A 1 HETATM 10 C C5' SAM . . . D 3 15.75 20.621 -19.397 1 22.38 ? C5' SAM 303 A 1 HETATM 11 C C4' SAM . . . D 3 16.164 19.324 -20.09 1 19.58 ? C4' SAM 303 A 1 HETATM 12 O O4' SAM . . . D 3 15.116 18.342 -20.033 1 17.85 ? O4' SAM 303 A 1 HETATM 13 C C3' SAM . . . D 3 16.478 19.576 -21.567 1 17.85 ? C3' SAM 303 A 1 HETATM 14 O O3' SAM . . . D 3 17.84 19.289 -21.858 1 18.49 ? O3' SAM 303 A 1 HETATM 15 C C2' SAM . . . D 3 15.53 18.681 -22.347 1 17.07 ? C2' SAM 303 A 1 HETATM 16 O O2' SAM . . . D 3 16.067 18.011 -23.507 1 15.79 ? O2' SAM 303 A 1 HETATM 17 C C1' SAM . . . D 3 15.182 17.656 -21.278 1 16.87 ? C1' SAM 303 A 1 HETATM 18 N N9 SAM . . . D 3 13.911 16.972 -21.507 1 16.27 ? N9 SAM 303 A 1 HETATM 19 C C8 SAM . . . D 3 12.76 17.507 -21.982 1 16.05 ? C8 SAM 303 A 1 HETATM 20 N N7 SAM . . . D 3 11.793 16.548 -22.025 1 16.11 ? N7 SAM 303 A 1 HETATM 21 C C5 SAM . . . D 3 12.351 15.399 -21.559 1 15.75 ? C5 SAM 303 A 1 HETATM 22 C C6 SAM . . . D 3 11.896 14.012 -21.371 1 15.89 ? C6 SAM 303 A 1 HETATM 23 N N6 SAM . . . D 3 10.624 13.726 -21.665 1 15.89 ? N6 SAM 303 A 1 HETATM 24 N N1 SAM . . . D 3 12.76 13.105 -20.863 1 15.05 ? N1 SAM 303 A 1 HETATM 25 C C2 SAM . . . D 3 14.026 13.455 -20.549 1 15.89 ? C2 SAM 303 A 1 HETATM 26 N N3 SAM . . . D 3 14.538 14.691 -20.75 1 15.52 ? N3 SAM 303 A 1 HETATM 27 C C4 SAM . . . D 3 13.74 15.68 -21.221 1 16.07 ? C4 SAM 303 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #