data_7C7Q
#
_model_server_result.job_id            YNf2aCdg1aXdTtKQraFdvA 
_model_server_result.datetime_utc      '2024-11-24 16:03:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7c7q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1002}' 
#
_entry.id    7C7Q 
#
_exptl.entry_id    7C7Q 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7C7Q 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7C7Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 222 A CYS 220 1_555 A SG CYS 248 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 A SG CYS 378 A CYS 376 1_555 A SG CYS 412 A CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 A SG CYS 665 A CYS 663 1_555 A SG CYS 763 A CYS 761 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? 
disulf ? disulf4 B SG CYS 97 B CYS 108 1_555 B SG CYS 124 B CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf5 B SG CYS 226 B CYS 237 1_555 B SG CYS 255 B CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf6 B SG CYS 254 B CYS 265 1_555 B SG CYS 291 B CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 B SG CYS 542 B CYS 553 1_555 B SG CYS 637 B CYS 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
covale ? covale1 A ND2 ASN 411 A ASN 409 1_555 C C1 NAG . A NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale2 A ND2 ASN 442 A ASN 440 1_555 D C1 NAG . A NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale3 A ND2 ASN 484 A ASN 482 1_555 E C1 NAG . A NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
covale ? covale4 A ND2 ASN 504 A ASN 502 1_555 F C1 NAG . A NAG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale5 A ND2 ASN 516 A ASN 514 1_555 G C1 NAG . A NAG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? 
covale ? covale6 B ND2 ASN 378 B ASN 389 1_555 J C1 NAG . B NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale7 B ND2 ASN 393 B ASN 404 1_555 K C1 NAG . B NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale8 B ND2 ASN 442 B ASN 453 1_555 L C1 NAG . B NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 306 n n 
C1 O1 NAG sing 307 n n 
C1 O5 NAG sing 308 n n 
C1 H1 NAG sing 309 n n 
C2 C3 NAG sing 310 n n 
C2 N2 NAG sing 311 n n 
C2 H2 NAG sing 312 n n 
C3 C4 NAG sing 313 n n 
C3 O3 NAG sing 314 n n 
C3 H3 NAG sing 315 n n 
C4 C5 NAG sing 316 n n 
C4 O4 NAG sing 317 n n 
C4 H4 NAG sing 318 n n 
C5 C6 NAG sing 319 n n 
C5 O5 NAG sing 320 n n 
C5 H5 NAG sing 321 n n 
C6 O6 NAG sing 322 n n 
C6 H61 NAG sing 323 n n 
C6 H62 NAG sing 324 n n 
C7 C8 NAG sing 325 n n 
C7 N2 NAG sing 326 n n 
C7 O7 NAG doub 327 n n 
C8 H81 NAG sing 328 n n 
C8 H82 NAG sing 329 n n 
C8 H83 NAG sing 330 n n 
N2 HN2 NAG sing 331 n n 
O1 HO1 NAG sing 332 n n 
O3 HO3 NAG sing 333 n n 
O4 HO4 NAG sing 334 n n 
O6 HO6 NAG sing 335 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7C7Q 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG A 1 1001 1001 NAG NAG . 
D 3 NAG A 1 1002 1101 NAG NAG . 
E 3 NAG A 1 1003 1201 NAG NAG . 
F 3 NAG A 1 1004 1301 NAG NAG . 
G 3 NAG A 1 1005 1401 NAG NAG . 
H 4 FN0 A 1 1006 1 FN0 PAM . 
I 5 2C0 A 1 1007 1 2C0 2C0 . 
J 3 NAG B 1 1001 1001 NAG NAG . 
K 3 NAG B 1 1002 1101 NAG NAG . 
L 3 NAG B 1 1003 1201 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 3 176.513 200.688 243.161 1 109.4 ? C1 NAG 1002 A 1 
HETATM 2 C C2 NAG . . . D 3 176.332 201.897 244.074 1 109.4 ? C2 NAG 1002 A 1 
HETATM 3 C C3 NAG . . . D 3 177.176 203.067 243.575 1 109.4 ? C3 NAG 1002 A 1 
HETATM 4 C C4 NAG . . . D 3 178.629 202.64 243.411 1 109.4 ? C4 NAG 1002 A 1 
HETATM 5 C C5 NAG . . . D 3 178.719 201.396 242.532 1 109.4 ? C5 NAG 1002 A 1 
HETATM 6 C C6 NAG . . . D 3 180.121 200.843 242.431 1 109.4 ? C6 NAG 1002 A 1 
HETATM 7 C C7 NAG . . . D 3 174.07 201.703 245.009 1 109.4 ? C7 NAG 1002 A 1 
HETATM 8 C C8 NAG . . . D 3 172.666 202.224 244.971 1 109.4 ? C8 NAG 1002 A 1 
HETATM 9 N N2 NAG . . . D 3 174.932 202.279 244.165 1 109.4 ? N2 NAG 1002 A 1 
HETATM 10 O O3 NAG . . . D 3 177.086 204.146 244.497 1 109.4 ? O3 NAG 1002 A 1 
HETATM 11 O O4 NAG . . . D 3 179.381 203.692 242.817 1 109.4 ? O4 NAG 1002 A 1 
HETATM 12 O O5 NAG . . . D 3 177.9 200.351 243.077 1 109.4 ? O5 NAG 1002 A 1 
HETATM 13 O O6 NAG . . . D 3 180.984 201.436 243.39 1 109.4 ? O6 NAG 1002 A 1 
HETATM 14 O O7 NAG . . . D 3 174.41 200.801 245.768 1 109.4 ? O7 NAG 1002 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           217 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#