data_7C83 # _model_server_result.job_id Ud-7PdkWeubU9eHEykGXxw _model_server_result.datetime_utc '2025-04-28 01:05:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7c83 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7C83 # _exptl.entry_id 7C83 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7C83 _cell.length_a 52.192 _cell.length_b 104.266 _cell.length_c 123.046 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7C83 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 7C83 _atom_sites.fract_transf_matrix[1][1] 0.01916 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009591 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008127 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 301 301 NDP NDP . C 3 OLC A 1 302 302 OLC OLC . D 3 OLC A 1 303 303 OLC OLC . E 3 OLC A 1 304 304 OLC OLC . F 3 OLC A 1 305 305 OLC OLC . G 3 OLC A 1 306 306 OLC OLC . H 3 OLC A 1 307 307 OLC OLC . I 3 OLC A 1 308 308 OLC OLC . J 3 OLC A 1 309 309 OLC OLC . K 4 HOH A 1 401 403 HOH HOH . K 4 HOH A 2 402 404 HOH HOH . K 4 HOH A 3 403 405 HOH HOH . K 4 HOH A 4 404 401 HOH HOH . K 4 HOH A 5 405 406 HOH HOH . K 4 HOH A 6 406 407 HOH HOH . K 4 HOH A 7 407 408 HOH HOH . K 4 HOH A 8 408 410 HOH HOH . K 4 HOH A 9 409 411 HOH HOH . K 4 HOH A 10 410 415 HOH HOH . K 4 HOH A 11 411 409 HOH HOH . K 4 HOH A 12 412 412 HOH HOH . K 4 HOH A 13 413 414 HOH HOH . K 4 HOH A 14 414 416 HOH HOH . K 4 HOH A 15 415 417 HOH HOH . K 4 HOH A 16 416 418 HOH HOH . K 4 HOH A 17 417 402 HOH HOH . K 4 HOH A 18 418 419 HOH HOH . K 4 HOH A 19 419 420 HOH HOH . K 4 HOH A 20 420 413 HOH HOH . K 4 HOH A 21 421 422 HOH HOH . K 4 HOH A 22 422 423 HOH HOH . K 4 HOH A 23 423 424 HOH HOH . K 4 HOH A 24 424 425 HOH HOH . K 4 HOH A 25 425 426 HOH HOH . K 4 HOH A 26 426 427 HOH HOH . K 4 HOH A 27 427 428 HOH HOH . K 4 HOH A 28 428 429 HOH HOH . K 4 HOH A 29 429 430 HOH HOH . K 4 HOH A 30 430 431 HOH HOH . K 4 HOH A 31 431 433 HOH HOH . K 4 HOH A 32 432 434 HOH HOH . K 4 HOH A 33 433 421 HOH HOH . K 4 HOH A 34 434 435 HOH HOH . K 4 HOH A 35 435 437 HOH HOH . K 4 HOH A 36 436 438 HOH HOH . K 4 HOH A 37 437 439 HOH HOH . K 4 HOH A 38 438 440 HOH HOH . K 4 HOH A 39 439 441 HOH HOH . K 4 HOH A 40 440 442 HOH HOH . K 4 HOH A 41 441 443 HOH HOH . K 4 HOH A 42 442 444 HOH HOH . K 4 HOH A 43 443 445 HOH HOH . K 4 HOH A 44 444 446 HOH HOH . K 4 HOH A 45 445 436 HOH HOH . K 4 HOH A 46 446 432 HOH HOH . K 4 HOH A 47 447 447 HOH HOH . K 4 HOH A 48 448 448 HOH HOH . K 4 HOH A 49 449 449 HOH HOH . K 4 HOH A 50 450 450 HOH HOH . K 4 HOH A 51 451 451 HOH HOH . K 4 HOH A 52 452 452 HOH HOH . K 4 HOH A 53 453 453 HOH HOH . K 4 HOH A 54 454 454 HOH HOH . K 4 HOH A 55 455 455 HOH HOH . K 4 HOH A 56 456 456 HOH HOH . K 4 HOH A 57 457 457 HOH HOH . K 4 HOH A 58 458 458 HOH HOH . K 4 HOH A 59 459 459 HOH HOH . K 4 HOH A 60 460 460 HOH HOH . K 4 HOH A 61 461 461 HOH HOH . K 4 HOH A 62 462 462 HOH HOH . K 4 HOH A 63 463 463 HOH HOH . K 4 HOH A 64 464 464 HOH HOH . K 4 HOH A 65 465 465 HOH HOH . K 4 HOH A 66 466 466 HOH HOH . K 4 HOH A 67 467 467 HOH HOH . K 4 HOH A 68 468 468 HOH HOH . K 4 HOH A 69 469 469 HOH HOH . K 4 HOH A 70 470 470 HOH HOH . K 4 HOH A 71 471 471 HOH HOH . K 4 HOH A 72 472 472 HOH HOH . K 4 HOH A 73 473 473 HOH HOH . K 4 HOH A 74 474 474 HOH HOH . K 4 HOH A 75 475 475 HOH HOH . K 4 HOH A 76 476 476 HOH HOH . K 4 HOH A 77 477 477 HOH HOH . K 4 HOH A 78 478 478 HOH HOH . K 4 HOH A 79 479 479 HOH HOH . K 4 HOH A 80 480 480 HOH HOH . K 4 HOH A 81 481 481 HOH HOH . K 4 HOH A 82 482 482 HOH HOH . K 4 HOH A 83 483 483 HOH HOH . K 4 HOH A 84 484 484 HOH HOH . K 4 HOH A 85 485 485 HOH HOH . K 4 HOH A 86 486 486 HOH HOH . K 4 HOH A 87 487 487 HOH HOH . K 4 HOH A 88 488 488 HOH HOH . K 4 HOH A 89 489 489 HOH HOH . K 4 HOH A 90 490 490 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 -1.295 -43.043 11.901 1 21.19 ? PA NDP 301 A 1 HETATM 2 O O1A NDP . . . B 2 -0.251 -43.196 10.845 1 22.46 ? O1A NDP 301 A 1 HETATM 3 O O2A NDP . . . B 2 -0.972 -43.498 13.286 1 17.92 ? O2A NDP 301 A 1 HETATM 4 O O5B NDP . . . B 2 -2.652 -43.747 11.414 1 25.8 ? O5B NDP 301 A 1 HETATM 5 C C5B NDP . . . B 2 -3.304 -43.244 10.221 1 22.19 ? C5B NDP 301 A 1 HETATM 6 C C4B NDP . . . B 2 -4.187 -44.321 9.641 1 22.26 ? C4B NDP 301 A 1 HETATM 7 O O4B NDP . . . B 2 -3.354 -45.348 9.043 1 23.24 ? O4B NDP 301 A 1 HETATM 8 C C3B NDP . . . B 2 -5.093 -45.057 10.638 1 25.26 ? C3B NDP 301 A 1 HETATM 9 O O3B NDP . . . B 2 -6.325 -45.432 10.037 1 25.61 ? O3B NDP 301 A 1 HETATM 10 C C2B NDP . . . B 2 -4.242 -46.261 11.02 1 22.06 ? C2B NDP 301 A 1 HETATM 11 O O2B NDP . . . B 2 -5.062 -47.347 11.442 1 22.55 ? O2B NDP 301 A 1 HETATM 12 C C1B NDP . . . B 2 -3.564 -46.581 9.693 1 25.44 ? C1B NDP 301 A 1 HETATM 13 N N9A NDP . . . B 2 -2.277 -47.25 9.842 1 22.35 ? N9A NDP 301 A 1 HETATM 14 C C8A NDP . . . B 2 -1.149 -46.737 10.431 1 19.36 ? C8A NDP 301 A 1 HETATM 15 N N7A NDP . . . B 2 -0.136 -47.566 10.423 1 17.5 ? N7A NDP 301 A 1 HETATM 16 C C5A NDP . . . B 2 -0.624 -48.699 9.788 1 20.13 ? C5A NDP 301 A 1 HETATM 17 C C6A NDP . . . B 2 -0.029 -49.935 9.47 1 20.46 ? C6A NDP 301 A 1 HETATM 18 N N6A NDP . . . B 2 1.231 -50.246 9.761 1 22.78 ? N6A NDP 301 A 1 HETATM 19 N N1A NDP . . . B 2 -0.796 -50.851 8.833 1 21.79 ? N1A NDP 301 A 1 HETATM 20 C C2A NDP . . . B 2 -2.064 -50.532 8.544 1 19.76 ? C2A NDP 301 A 1 HETATM 21 N N3A NDP . . . B 2 -2.727 -49.407 8.793 1 24.08 ? N3A NDP 301 A 1 HETATM 22 C C4A NDP . . . B 2 -1.944 -48.517 9.424 1 21.22 ? C4A NDP 301 A 1 HETATM 23 O O3 NDP . . . B 2 -1.75 -41.506 11.957 1 18.11 ? O3 NDP 301 A 1 HETATM 24 P PN NDP . . . B 2 -2.663 -40.682 12.987 1 21.82 ? PN NDP 301 A 1 HETATM 25 O O1N NDP . . . B 2 -1.922 -40.539 14.275 1 16.2 ? O1N NDP 301 A 1 HETATM 26 O O2N NDP . . . B 2 -4.024 -41.296 13.018 1 16.01 ? O2N NDP 301 A 1 HETATM 27 O O5D NDP . . . B 2 -2.739 -39.257 12.255 1 18.41 ? O5D NDP 301 A 1 HETATM 28 C C5D NDP . . . B 2 -3.741 -39.061 11.226 1 22.03 ? C5D NDP 301 A 1 HETATM 29 C C4D NDP . . . B 2 -3.343 -37.894 10.356 1 20.8 ? C4D NDP 301 A 1 HETATM 30 O O4D NDP . . . B 2 -3.681 -36.658 11.035 1 19.64 ? O4D NDP 301 A 1 HETATM 31 C C3D NDP . . . B 2 -1.852 -37.793 10.007 1 17.52 ? C3D NDP 301 A 1 HETATM 32 O O3D NDP . . . B 2 -1.663 -37.274 8.696 1 21.9 ? O3D NDP 301 A 1 HETATM 33 C C2D NDP . . . B 2 -1.332 -36.849 11.088 1 15.43 ? C2D NDP 301 A 1 HETATM 34 O O2D NDP . . . B 2 -0.194 -36.111 10.665 1 16.09 ? O2D NDP 301 A 1 HETATM 35 C C1D NDP . . . B 2 -2.519 -35.929 11.355 1 17.7 ? C1D NDP 301 A 1 HETATM 36 N N1N NDP . . . B 2 -2.602 -35.52 12.788 1 23.09 ? N1N NDP 301 A 1 HETATM 37 C C2N NDP . . . B 2 -2.389 -34.222 13.159 1 19.1 ? C2N NDP 301 A 1 HETATM 38 C C3N NDP . . . B 2 -1.879 -33.915 14.387 1 26.17 ? C3N NDP 301 A 1 HETATM 39 C C7N NDP . . . B 2 -1.271 -32.578 14.568 1 24.31 ? C7N NDP 301 A 1 HETATM 40 O O7N NDP . . . B 2 -0.859 -32.235 15.68 1 24.73 ? O7N NDP 301 A 1 HETATM 41 N N7N NDP . . . B 2 -1.19 -31.782 13.512 1 22.78 ? N7N NDP 301 A 1 HETATM 42 C C4N NDP . . . B 2 -1.969 -34.948 15.459 1 26.9 ? C4N NDP 301 A 1 HETATM 43 C C5N NDP . . . B 2 -2.488 -36.255 15.005 1 25.71 ? C5N NDP 301 A 1 HETATM 44 C C6N NDP . . . B 2 -2.893 -36.438 13.768 1 23.25 ? C6N NDP 301 A 1 HETATM 45 P P2B NDP . . . B 2 -5.127 -47.376 13.054 1 22.57 ? P2B NDP 301 A 1 HETATM 46 O O1X NDP . . . B 2 -3.701 -47.549 13.542 1 21.7 ? O1X NDP 301 A 1 HETATM 47 O O2X NDP . . . B 2 -6.008 -48.551 13.432 1 19.11 ? O2X NDP 301 A 1 HETATM 48 O O3X NDP . . . B 2 -5.723 -46.05 13.487 1 20.53 ? O3X NDP 301 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #