data_7C8R # _model_server_result.job_id 50IuxCgDvSDfoe-xN3p4Jg _model_server_result.datetime_utc '2025-01-28 02:04:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7c8r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7C8R # _exptl.entry_id 7C8R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 632.788 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ethyl (4R)-4-[[(2S)-4-methyl-2-[[(2S,3R)-3-[(2-methylpropan-2-yl)oxy]-2-(phenylmethoxycarbonylamino)butanoyl]amino]pentanoyl]amino]-5-[(3S)-2-oxidanylidenepyrrolidin-3-yl]pentanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7C8R _cell.length_a 104.39 _cell.length_b 104.39 _cell.length_c 90.233 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7C8R _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 30.077667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C07 _struct_conn.ptnr2_label_comp_id TG3 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id TG3 _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.675 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C33 H52 N4 O8' _chem_comp.formula_weight 632.788 _chem_comp.id TG3 _chem_comp.mon_nstd_flag . _chem_comp.name 'ethyl (4R)-4-[[(2S)-4-methyl-2-[[(2S,3R)-3-[(2-methylpropan-2-yl)oxy]-2-(phenylmethoxycarbonylamino)butanoyl]amino]pentanoyl]amino]-5-[(3S)-2-oxidanylidenepyrrolidin-3-yl]pentanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C37 C36 TG3 doub 290 n y C37 C38 TG3 sing 291 n y C36 C35 TG3 sing 292 n y C38 C33 TG3 doub 293 n y C35 C34 TG3 doub 294 n y C33 C34 TG3 sing 295 n y C33 C32 TG3 sing 296 n n C22 C21 TG3 sing 297 n n O30 C29 TG3 doub 298 n n C32 O31 TG3 sing 299 n n O31 C29 TG3 sing 300 n n C29 N28 TG3 sing 301 n n C23 C21 TG3 sing 302 n n C21 C20 TG3 sing 303 n n C43 C42 TG3 sing 304 n n C20 C19 TG3 sing 305 n n O41 C42 TG3 sing 306 n n O41 C39 TG3 sing 307 n n N24 C19 TG3 sing 308 n n N24 C25 TG3 sing 309 n n C27 N28 TG3 sing 310 n n C27 C39 TG3 sing 311 n n C27 C25 TG3 sing 312 n n C42 C44 TG3 sing 313 n n C42 C45 TG3 sing 314 n n C19 C17 TG3 sing 315 n n C39 C40 TG3 sing 316 n n C01 C02 TG3 sing 317 n n C25 O26 TG3 doub 318 n n O18 C17 TG3 doub 319 n n C17 N16 TG3 sing 320 n n C02 O03 TG3 sing 321 n n O03 C04 TG3 sing 322 n n N16 C08 TG3 sing 323 n n C06 C04 TG3 sing 324 n n C06 C07 TG3 sing 325 n n C04 O05 TG3 doub 326 n n C08 C07 TG3 sing 327 n n C08 C09 TG3 sing 328 n n C11 C12 TG3 sing 329 n n C11 C10 TG3 sing 330 n n C12 N13 TG3 sing 331 n n C10 C09 TG3 sing 332 n n C10 C14 TG3 sing 333 n n N13 C14 TG3 sing 334 n n C14 O15 TG3 doub 335 n n C01 H1 TG3 sing 336 n n C01 H2 TG3 sing 337 n n C01 H3 TG3 sing 338 n n C02 H4 TG3 sing 339 n n C02 H5 TG3 sing 340 n n C06 H6 TG3 sing 341 n n C06 H7 TG3 sing 342 n n C07 H8 TG3 sing 343 n n C07 H9 TG3 sing 344 n n C08 H10 TG3 sing 345 n n C09 H11 TG3 sing 346 n n C09 H12 TG3 sing 347 n n C10 H13 TG3 sing 348 n n C11 H14 TG3 sing 349 n n C11 H15 TG3 sing 350 n n C12 H16 TG3 sing 351 n n C12 H17 TG3 sing 352 n n N13 H18 TG3 sing 353 n n N16 H19 TG3 sing 354 n n C19 H20 TG3 sing 355 n n C20 H21 TG3 sing 356 n n C20 H22 TG3 sing 357 n n C21 H23 TG3 sing 358 n n C22 H24 TG3 sing 359 n n C22 H25 TG3 sing 360 n n C22 H26 TG3 sing 361 n n C23 H27 TG3 sing 362 n n C23 H28 TG3 sing 363 n n C23 H29 TG3 sing 364 n n N24 H30 TG3 sing 365 n n C27 H31 TG3 sing 366 n n N28 H32 TG3 sing 367 n n C32 H33 TG3 sing 368 n n C32 H34 TG3 sing 369 n n C34 H35 TG3 sing 370 n n C35 H36 TG3 sing 371 n n C36 H37 TG3 sing 372 n n C37 H38 TG3 sing 373 n n C38 H39 TG3 sing 374 n n C39 H40 TG3 sing 375 n n C40 H41 TG3 sing 376 n n C40 H42 TG3 sing 377 n n C40 H43 TG3 sing 378 n n C43 H44 TG3 sing 379 n n C43 H45 TG3 sing 380 n n C43 H46 TG3 sing 381 n n C44 H47 TG3 sing 382 n n C44 H48 TG3 sing 383 n n C44 H49 TG3 sing 384 n n C45 H50 TG3 sing 385 n n C45 H51 TG3 sing 386 n n C45 H52 TG3 sing 387 n n # _atom_sites.entry_id 7C8R _atom_sites.fract_transf_matrix[1][1] 0.009579 _atom_sites.fract_transf_matrix[1][2] 0.005531 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011061 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011082 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TG3 A 1 401 1 TG3 TG3 . C 3 HOH A 1 501 5 HOH HOH . C 3 HOH A 2 502 84 HOH HOH . C 3 HOH A 3 503 8 HOH HOH . C 3 HOH A 4 504 55 HOH HOH . C 3 HOH A 5 505 77 HOH HOH . C 3 HOH A 6 506 63 HOH HOH . C 3 HOH A 7 507 39 HOH HOH . C 3 HOH A 8 508 78 HOH HOH . C 3 HOH A 9 509 47 HOH HOH . C 3 HOH A 10 510 61 HOH HOH . C 3 HOH A 11 511 43 HOH HOH . C 3 HOH A 12 512 38 HOH HOH . C 3 HOH A 13 513 20 HOH HOH . C 3 HOH A 14 514 21 HOH HOH . C 3 HOH A 15 515 42 HOH HOH . C 3 HOH A 16 516 9 HOH HOH . C 3 HOH A 17 517 59 HOH HOH . C 3 HOH A 18 518 40 HOH HOH . C 3 HOH A 19 519 14 HOH HOH . C 3 HOH A 20 520 37 HOH HOH . C 3 HOH A 21 521 32 HOH HOH . C 3 HOH A 22 522 6 HOH HOH . C 3 HOH A 23 523 22 HOH HOH . C 3 HOH A 24 524 58 HOH HOH . C 3 HOH A 25 525 56 HOH HOH . C 3 HOH A 26 526 57 HOH HOH . C 3 HOH A 27 527 31 HOH HOH . C 3 HOH A 28 528 15 HOH HOH . C 3 HOH A 29 529 67 HOH HOH . C 3 HOH A 30 530 74 HOH HOH . C 3 HOH A 31 531 10 HOH HOH . C 3 HOH A 32 532 7 HOH HOH . C 3 HOH A 33 533 18 HOH HOH . C 3 HOH A 34 534 72 HOH HOH . C 3 HOH A 35 535 28 HOH HOH . C 3 HOH A 36 536 2 HOH HOH . C 3 HOH A 37 537 46 HOH HOH . C 3 HOH A 38 538 1 HOH HOH . C 3 HOH A 39 539 12 HOH HOH . C 3 HOH A 40 540 29 HOH HOH . C 3 HOH A 41 541 41 HOH HOH . C 3 HOH A 42 542 34 HOH HOH . C 3 HOH A 43 543 36 HOH HOH . C 3 HOH A 44 544 4 HOH HOH . C 3 HOH A 45 545 68 HOH HOH . C 3 HOH A 46 546 70 HOH HOH . C 3 HOH A 47 547 19 HOH HOH . C 3 HOH A 48 548 11 HOH HOH . C 3 HOH A 49 549 23 HOH HOH . C 3 HOH A 50 550 50 HOH HOH . C 3 HOH A 51 551 27 HOH HOH . C 3 HOH A 52 552 30 HOH HOH . C 3 HOH A 53 553 25 HOH HOH . C 3 HOH A 54 554 45 HOH HOH . C 3 HOH A 55 555 33 HOH HOH . C 3 HOH A 56 556 48 HOH HOH . C 3 HOH A 57 557 54 HOH HOH . C 3 HOH A 58 558 71 HOH HOH . C 3 HOH A 59 559 16 HOH HOH . C 3 HOH A 60 560 65 HOH HOH . C 3 HOH A 61 561 52 HOH HOH . C 3 HOH A 62 562 51 HOH HOH . C 3 HOH A 63 563 49 HOH HOH . C 3 HOH A 64 564 69 HOH HOH . C 3 HOH A 65 565 75 HOH HOH . C 3 HOH A 66 566 24 HOH HOH . C 3 HOH A 67 567 26 HOH HOH . C 3 HOH A 68 568 44 HOH HOH . C 3 HOH A 69 569 3 HOH HOH . C 3 HOH A 70 570 60 HOH HOH . C 3 HOH A 71 571 35 HOH HOH . C 3 HOH A 72 572 82 HOH HOH . C 3 HOH A 73 573 83 HOH HOH . C 3 HOH A 74 574 73 HOH HOH . C 3 HOH A 75 575 80 HOH HOH . C 3 HOH A 76 576 64 HOH HOH . C 3 HOH A 77 577 13 HOH HOH . C 3 HOH A 78 578 62 HOH HOH . C 3 HOH A 79 579 17 HOH HOH . C 3 HOH A 80 580 66 HOH HOH . C 3 HOH A 81 581 53 HOH HOH . C 3 HOH A 82 582 76 HOH HOH . C 3 HOH A 83 583 79 HOH HOH . C 3 HOH A 84 584 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 TG3 . . . B 2 17.104 24.569 -9.319 1 42.7 ? C01 TG3 401 A 1 HETATM 2 C C02 TG3 . . . B 2 17.781 25.353 -8.184 1 41.34 ? C02 TG3 401 A 1 HETATM 3 O O03 TG3 . . . B 2 16.946 26.453 -7.996 1 39.85 ? O03 TG3 401 A 1 HETATM 4 C C04 TG3 . . . B 2 17.172 27.238 -6.878 1 33.74 ? C04 TG3 401 A 1 HETATM 5 O O05 TG3 . . . B 2 17.32 26.759 -5.805 1 33.37 ? O05 TG3 401 A 1 HETATM 6 C C06 TG3 . . . B 2 17.139 28.717 -7.166 1 30.5 ? C06 TG3 401 A 1 HETATM 7 C C07 TG3 . . . B 2 17.128 29.679 -5.973 1 29.85 ? C07 TG3 401 A 1 HETATM 8 C C08 TG3 . . . B 2 18.189 30.742 -6.297 1 26.5 ? C08 TG3 401 A 1 HETATM 9 C C09 TG3 . . . B 2 18.625 31.608 -5.101 1 25.48 ? C09 TG3 401 A 1 HETATM 10 C C10 TG3 . . . B 2 19.691 32.553 -5.4 1 23.47 ? C10 TG3 401 A 1 HETATM 11 C C11 TG3 . . . B 2 20.968 31.816 -5.765 1 24.91 ? C11 TG3 401 A 1 HETATM 12 C C12 TG3 . . . B 2 21.952 32.711 -5.472 1 23.53 ? C12 TG3 401 A 1 HETATM 13 N N13 TG3 . . . B 2 21.451 33.423 -4.168 1 23.99 ? N13 TG3 401 A 1 HETATM 14 C C14 TG3 . . . B 2 20.107 33.343 -4.094 1 23.96 ? C14 TG3 401 A 1 HETATM 15 O O15 TG3 . . . B 2 19.398 33.804 -3.253 1 23.28 ? O15 TG3 401 A 1 HETATM 16 N N16 TG3 . . . B 2 17.514 31.614 -7.24 1 26.46 ? N16 TG3 401 A 1 HETATM 17 C C17 TG3 . . . B 2 18.022 31.891 -8.579 1 28.85 ? C17 TG3 401 A 1 HETATM 18 O O18 TG3 . . . B 2 19.042 31.407 -8.958 1 28.9 ? O18 TG3 401 A 1 HETATM 19 C C19 TG3 . . . B 2 17.189 32.845 -9.447 1 29.45 ? C19 TG3 401 A 1 HETATM 20 C C20 TG3 . . . B 2 16.405 32.094 -10.498 1 31.06 ? C20 TG3 401 A 1 HETATM 21 C C21 TG3 . . . B 2 15.087 32.73 -10.916 1 32.37 ? C21 TG3 401 A 1 HETATM 22 C C22 TG3 . . . B 2 14.701 32.178 -12.273 1 33.78 ? C22 TG3 401 A 1 HETATM 23 C C23 TG3 . . . B 2 15.106 34.244 -10.997 1 31.47 ? C23 TG3 401 A 1 HETATM 24 N N24 TG3 . . . B 2 18.119 33.738 -10.1 1 29.21 ? N24 TG3 401 A 1 HETATM 25 C C25 TG3 . . . B 2 18.811 34.794 -9.342 1 32.59 ? C25 TG3 401 A 1 HETATM 26 O O26 TG3 . . . B 2 18.61 34.905 -8.203 1 31.14 ? O26 TG3 401 A 1 HETATM 27 C C27 TG3 . . . B 2 19.809 35.758 -10.048 1 32.36 ? C27 TG3 401 A 1 HETATM 28 N N28 TG3 . . . B 2 19.269 37.134 -9.97 1 36.95 ? N28 TG3 401 A 1 HETATM 29 C C29 TG3 . . . B 2 18.835 37.7 -11.226 1 39.92 ? C29 TG3 401 A 1 HETATM 30 O O30 TG3 . . . B 2 19.304 37.228 -12.189 1 43.28 ? O30 TG3 401 A 1 HETATM 31 O O31 TG3 . . . B 2 17.805 38.662 -11.333 1 48.72 ? O31 TG3 401 A 1 HETATM 32 C C32 TG3 . . . B 2 17.973 40.055 -11.523 1 51.06 ? C32 TG3 401 A 1 HETATM 33 C C33 TG3 . . . B 2 19.087 40.4 -12.507 1 52.81 ? C33 TG3 401 A 1 HETATM 34 C C34 TG3 . . . B 2 20.037 41.361 -12.153 1 51.34 ? C34 TG3 401 A 1 HETATM 35 C C35 TG3 . . . B 2 21.066 41.675 -13.032 1 53.96 ? C35 TG3 401 A 1 HETATM 36 C C36 TG3 . . . B 2 21.132 41.04 -14.275 1 57.09 ? C36 TG3 401 A 1 HETATM 37 C C37 TG3 . . . B 2 20.173 40.087 -14.634 1 57.1 ? C37 TG3 401 A 1 HETATM 38 C C38 TG3 . . . B 2 19.145 39.771 -13.754 1 56.32 ? C38 TG3 401 A 1 HETATM 39 C C39 TG3 . . . B 2 21.197 35.742 -9.428 1 32.21 ? C39 TG3 401 A 1 HETATM 40 C C40 TG3 . . . B 2 21.738 34.303 -9.434 1 32.34 ? C40 TG3 401 A 1 HETATM 41 O O41 TG3 . . . B 2 22.001 36.612 -10.188 1 32.27 ? O41 TG3 401 A 1 HETATM 42 C C42 TG3 . . . B 2 22.808 37.563 -9.546 1 34.29 ? C42 TG3 401 A 1 HETATM 43 C C43 TG3 . . . B 2 23.908 38.083 -10.472 1 32.63 ? C43 TG3 401 A 1 HETATM 44 C C44 TG3 . . . B 2 21.899 38.72 -9.183 1 34.11 ? C44 TG3 401 A 1 HETATM 45 C C45 TG3 . . . B 2 23.526 36.973 -8.32 1 35.5 ? C45 TG3 401 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 45 #