data_7C8V # _model_server_result.job_id Jd9VglZRJ43ge8abrJYvrg _model_server_result.datetime_utc '2024-11-21 09:19:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7c8v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":607}' # _entry.id 7C8V # _exptl.entry_id 7C8V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7C8V _cell.length_a 65.553 _cell.length_b 65.553 _cell.length_c 344.526 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7C8V _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall 'P 65 2 (x,y,z+1/12)' _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 22 1_555 A SG CYS 100 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 B SG CYS 10 B CYS 336 1_555 B SG CYS 35 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 53 B CYS 379 1_555 B SG CYS 106 B CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 B SG CYS 65 B CYS 391 1_555 B SG CYS 199 B CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 B SG CYS 154 B CYS 480 1_555 B SG CYS 162 B CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? covale ? covale1 B ND2 ASN 17 B ASN 343 1_555 F C1 NAG . B NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7C8V _atom_sites.fract_transf_matrix[1][1] 0.015255 _atom_sites.fract_transf_matrix[1][2] 0.008807 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017615 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002903 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 201 201 GOL GOL . D 3 GOL B 1 601 601 GOL GOL . E 3 GOL B 1 602 701 GOL GOL . F 4 NAG B 1 603 702 NAG NAG . G 3 GOL B 1 604 801 GOL GOL . H 3 GOL B 1 605 901 GOL GOL . I 3 GOL B 1 606 1001 GOL GOL . J 3 GOL B 1 607 1301 GOL GOL . K 3 GOL B 1 608 1501 GOL GOL . L 5 HOH A 1 301 15 HOH HOH . L 5 HOH A 2 302 222 HOH HOH . L 5 HOH A 3 303 274 HOH HOH . L 5 HOH A 4 304 81 HOH HOH . L 5 HOH A 5 305 64 HOH HOH . L 5 HOH A 6 306 210 HOH HOH . L 5 HOH A 7 307 130 HOH HOH . L 5 HOH A 8 308 257 HOH HOH . L 5 HOH A 9 309 139 HOH HOH . L 5 HOH A 10 310 127 HOH HOH . L 5 HOH A 11 311 221 HOH HOH . L 5 HOH A 12 312 31 HOH HOH . L 5 HOH A 13 313 93 HOH HOH . L 5 HOH A 14 314 108 HOH HOH . L 5 HOH A 15 315 10 HOH HOH . L 5 HOH A 16 316 209 HOH HOH . L 5 HOH A 17 317 104 HOH HOH . L 5 HOH A 18 318 1 HOH HOH . L 5 HOH A 19 319 101 HOH HOH . L 5 HOH A 20 320 198 HOH HOH . L 5 HOH A 21 321 76 HOH HOH . L 5 HOH A 22 322 110 HOH HOH . L 5 HOH A 23 323 254 HOH HOH . L 5 HOH A 24 324 168 HOH HOH . L 5 HOH A 25 325 251 HOH HOH . L 5 HOH A 26 326 35 HOH HOH . L 5 HOH A 27 327 277 HOH HOH . L 5 HOH A 28 328 14 HOH HOH . L 5 HOH A 29 329 135 HOH HOH . L 5 HOH A 30 330 128 HOH HOH . L 5 HOH A 31 331 59 HOH HOH . L 5 HOH A 32 332 153 HOH HOH . L 5 HOH A 33 333 20 HOH HOH . L 5 HOH A 34 334 199 HOH HOH . L 5 HOH A 35 335 163 HOH HOH . L 5 HOH A 36 336 25 HOH HOH . L 5 HOH A 37 337 215 HOH HOH . L 5 HOH A 38 338 119 HOH HOH . L 5 HOH A 39 339 178 HOH HOH . L 5 HOH A 40 340 47 HOH HOH . L 5 HOH A 41 341 79 HOH HOH . L 5 HOH A 42 342 131 HOH HOH . L 5 HOH A 43 343 30 HOH HOH . L 5 HOH A 44 344 68 HOH HOH . L 5 HOH A 45 345 57 HOH HOH . L 5 HOH A 46 346 82 HOH HOH . L 5 HOH A 47 347 137 HOH HOH . L 5 HOH A 48 348 46 HOH HOH . L 5 HOH A 49 349 75 HOH HOH . L 5 HOH A 50 350 89 HOH HOH . L 5 HOH A 51 351 72 HOH HOH . L 5 HOH A 52 352 99 HOH HOH . L 5 HOH A 53 353 133 HOH HOH . L 5 HOH A 54 354 136 HOH HOH . L 5 HOH A 55 355 129 HOH HOH . L 5 HOH A 56 356 160 HOH HOH . L 5 HOH A 57 357 193 HOH HOH . L 5 HOH A 58 358 166 HOH HOH . L 5 HOH A 59 359 8 HOH HOH . L 5 HOH A 60 360 118 HOH HOH . L 5 HOH A 61 361 157 HOH HOH . L 5 HOH A 62 362 6 HOH HOH . L 5 HOH A 63 363 252 HOH HOH . L 5 HOH A 64 364 275 HOH HOH . L 5 HOH A 65 365 185 HOH HOH . L 5 HOH A 66 366 141 HOH HOH . L 5 HOH A 67 367 159 HOH HOH . L 5 HOH A 68 368 237 HOH HOH . L 5 HOH A 69 369 116 HOH HOH . L 5 HOH A 70 370 250 HOH HOH . L 5 HOH A 71 371 256 HOH HOH . L 5 HOH A 72 372 165 HOH HOH . L 5 HOH A 73 373 225 HOH HOH . L 5 HOH A 74 374 235 HOH HOH . L 5 HOH A 75 375 273 HOH HOH . L 5 HOH A 76 376 276 HOH HOH . L 5 HOH A 77 377 173 HOH HOH . L 5 HOH A 78 378 283 HOH HOH . L 5 HOH A 79 379 255 HOH HOH . L 5 HOH A 80 380 280 HOH HOH . L 5 HOH A 81 381 134 HOH HOH . L 5 HOH A 82 382 208 HOH HOH . L 5 HOH A 83 383 259 HOH HOH . L 5 HOH A 84 384 223 HOH HOH . L 5 HOH A 85 385 258 HOH HOH . L 5 HOH A 86 386 282 HOH HOH . M 5 HOH B 1 701 240 HOH HOH . M 5 HOH B 2 702 37 HOH HOH . M 5 HOH B 3 703 50 HOH HOH . M 5 HOH B 4 704 147 HOH HOH . M 5 HOH B 5 705 24 HOH HOH . M 5 HOH B 6 706 7 HOH HOH . M 5 HOH B 7 707 34 HOH HOH . M 5 HOH B 8 708 123 HOH HOH . M 5 HOH B 9 709 167 HOH HOH . M 5 HOH B 10 710 9 HOH HOH . M 5 HOH B 11 711 91 HOH HOH . M 5 HOH B 12 712 33 HOH HOH . M 5 HOH B 13 713 28 HOH HOH . M 5 HOH B 14 714 253 HOH HOH . M 5 HOH B 15 715 87 HOH HOH . M 5 HOH B 16 716 245 HOH HOH . M 5 HOH B 17 717 38 HOH HOH . M 5 HOH B 18 718 78 HOH HOH . M 5 HOH B 19 719 241 HOH HOH . M 5 HOH B 20 720 216 HOH HOH . M 5 HOH B 21 721 196 HOH HOH . M 5 HOH B 22 722 58 HOH HOH . M 5 HOH B 23 723 90 HOH HOH . M 5 HOH B 24 724 236 HOH HOH . M 5 HOH B 25 725 41 HOH HOH . M 5 HOH B 26 726 16 HOH HOH . M 5 HOH B 27 727 105 HOH HOH . M 5 HOH B 28 728 49 HOH HOH . M 5 HOH B 29 729 94 HOH HOH . M 5 HOH B 30 730 73 HOH HOH . M 5 HOH B 31 731 191 HOH HOH . M 5 HOH B 32 732 22 HOH HOH . M 5 HOH B 33 733 88 HOH HOH . M 5 HOH B 34 734 52 HOH HOH . M 5 HOH B 35 735 156 HOH HOH . M 5 HOH B 36 736 23 HOH HOH . M 5 HOH B 37 737 51 HOH HOH . M 5 HOH B 38 738 29 HOH HOH . M 5 HOH B 39 739 190 HOH HOH . M 5 HOH B 40 740 3 HOH HOH . M 5 HOH B 41 741 11 HOH HOH . M 5 HOH B 42 742 32 HOH HOH . M 5 HOH B 43 743 232 HOH HOH . M 5 HOH B 44 744 27 HOH HOH . M 5 HOH B 45 745 214 HOH HOH . M 5 HOH B 46 746 144 HOH HOH . M 5 HOH B 47 747 180 HOH HOH . M 5 HOH B 48 748 111 HOH HOH . M 5 HOH B 49 749 102 HOH HOH . M 5 HOH B 50 750 126 HOH HOH . M 5 HOH B 51 751 150 HOH HOH . M 5 HOH B 52 752 26 HOH HOH . M 5 HOH B 53 753 19 HOH HOH . M 5 HOH B 54 754 44 HOH HOH . M 5 HOH B 55 755 86 HOH HOH . M 5 HOH B 56 756 13 HOH HOH . M 5 HOH B 57 757 145 HOH HOH . M 5 HOH B 58 758 56 HOH HOH . M 5 HOH B 59 759 231 HOH HOH . M 5 HOH B 60 760 4 HOH HOH . M 5 HOH B 61 761 84 HOH HOH . M 5 HOH B 62 762 112 HOH HOH . M 5 HOH B 63 763 36 HOH HOH . M 5 HOH B 64 764 140 HOH HOH . M 5 HOH B 65 765 21 HOH HOH . M 5 HOH B 66 766 121 HOH HOH . M 5 HOH B 67 767 96 HOH HOH . M 5 HOH B 68 768 138 HOH HOH . M 5 HOH B 69 769 12 HOH HOH . M 5 HOH B 70 770 53 HOH HOH . M 5 HOH B 71 771 17 HOH HOH . M 5 HOH B 72 772 62 HOH HOH . M 5 HOH B 73 773 169 HOH HOH . M 5 HOH B 74 774 70 HOH HOH . M 5 HOH B 75 775 69 HOH HOH . M 5 HOH B 76 776 92 HOH HOH . M 5 HOH B 77 777 66 HOH HOH . M 5 HOH B 78 778 146 HOH HOH . M 5 HOH B 79 779 42 HOH HOH . M 5 HOH B 80 780 217 HOH HOH . M 5 HOH B 81 781 268 HOH HOH . M 5 HOH B 82 782 60 HOH HOH . M 5 HOH B 83 783 77 HOH HOH . M 5 HOH B 84 784 43 HOH HOH . M 5 HOH B 85 785 61 HOH HOH . M 5 HOH B 86 786 83 HOH HOH . M 5 HOH B 87 787 186 HOH HOH . M 5 HOH B 88 788 2 HOH HOH . M 5 HOH B 89 789 158 HOH HOH . M 5 HOH B 90 790 195 HOH HOH . M 5 HOH B 91 791 239 HOH HOH . M 5 HOH B 92 792 117 HOH HOH . M 5 HOH B 93 793 98 HOH HOH . M 5 HOH B 94 794 63 HOH HOH . M 5 HOH B 95 795 18 HOH HOH . M 5 HOH B 96 796 106 HOH HOH . M 5 HOH B 97 797 67 HOH HOH . M 5 HOH B 98 798 113 HOH HOH . M 5 HOH B 99 799 114 HOH HOH . M 5 HOH B 100 800 5 HOH HOH . M 5 HOH B 101 801 45 HOH HOH . M 5 HOH B 102 802 213 HOH HOH . M 5 HOH B 103 803 54 HOH HOH . M 5 HOH B 104 804 55 HOH HOH . M 5 HOH B 105 805 39 HOH HOH . M 5 HOH B 106 806 71 HOH HOH . M 5 HOH B 107 807 48 HOH HOH . M 5 HOH B 108 808 95 HOH HOH . M 5 HOH B 109 809 279 HOH HOH . M 5 HOH B 110 810 40 HOH HOH . M 5 HOH B 111 811 220 HOH HOH . M 5 HOH B 112 812 85 HOH HOH . M 5 HOH B 113 813 74 HOH HOH . M 5 HOH B 114 814 132 HOH HOH . M 5 HOH B 115 815 248 HOH HOH . M 5 HOH B 116 816 192 HOH HOH . M 5 HOH B 117 817 103 HOH HOH . M 5 HOH B 118 818 246 HOH HOH . M 5 HOH B 119 819 149 HOH HOH . M 5 HOH B 120 820 247 HOH HOH . M 5 HOH B 121 821 184 HOH HOH . M 5 HOH B 122 822 249 HOH HOH . M 5 HOH B 123 823 115 HOH HOH . M 5 HOH B 124 824 219 HOH HOH . M 5 HOH B 125 825 120 HOH HOH . M 5 HOH B 126 826 242 HOH HOH . M 5 HOH B 127 827 229 HOH HOH . M 5 HOH B 128 828 148 HOH HOH . M 5 HOH B 129 829 212 HOH HOH . M 5 HOH B 130 830 201 HOH HOH . M 5 HOH B 131 831 154 HOH HOH . M 5 HOH B 132 832 238 HOH HOH . M 5 HOH B 133 833 155 HOH HOH . M 5 HOH B 134 834 100 HOH HOH . M 5 HOH B 135 835 281 HOH HOH . M 5 HOH B 136 836 227 HOH HOH . M 5 HOH B 137 837 107 HOH HOH . M 5 HOH B 138 838 170 HOH HOH . M 5 HOH B 139 839 244 HOH HOH . M 5 HOH B 140 840 233 HOH HOH . M 5 HOH B 141 841 109 HOH HOH . M 5 HOH B 142 842 278 HOH HOH . M 5 HOH B 143 843 152 HOH HOH . M 5 HOH B 144 844 211 HOH HOH . M 5 HOH B 145 845 122 HOH HOH . M 5 HOH B 146 846 230 HOH HOH . M 5 HOH B 147 847 228 HOH HOH . M 5 HOH B 148 848 175 HOH HOH . M 5 HOH B 149 849 125 HOH HOH . M 5 HOH B 150 850 80 HOH HOH . M 5 HOH B 151 851 124 HOH HOH . M 5 HOH B 152 852 189 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 3 12.114 -0.987 78.625 1 61.45 ? C1 GOL 607 B 1 HETATM 2 O O1 GOL . . . J 3 12.742 -1.173 77.383 1 62.85 ? O1 GOL 607 B 1 HETATM 3 C C2 GOL . . . J 3 10.75 -0.304 78.357 1 67.83 ? C2 GOL 607 B 1 HETATM 4 O O2 GOL . . . J 3 10.893 0.905 77.691 1 51.23 ? O2 GOL 607 B 1 HETATM 5 C C3 GOL . . . J 3 10.061 -0.168 79.77 1 69.87 ? C3 GOL 607 B 1 HETATM 6 O O3 GOL . . . J 3 10.815 0.732 80.537 1 52.01 ? O3 GOL 607 B 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #