data_7C98 # _model_server_result.job_id Gp0aZWhuURb-HJsOj4Z39w _model_server_result.datetime_utc '2024-12-01 17:51:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7c98 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":402}' # _entry.id 7C98 # _exptl.entry_id 7C98 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7C98 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7C98 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 I N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F CA CA . A CA 401 1_555 G O1B ANP . A ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc2 F CA CA . A CA 401 1_555 G O3G ANP . A ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc3 H CA CA . B CA 401 1_555 I O3G ANP . B ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc4 H CA CA . B CA 401 1_555 I O1B ANP . B ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc5 C OE1 GLU 162 C GLU 162 1_555 K CA CA . C CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.107 ? metalc ? metalc6 J O1G ANP . C ANP 401 1_555 K CA CA . C CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc7 J O1B ANP . C ANP 401 1_555 K CA CA . C CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc8 J O2B ANP . C ANP 401 1_555 K CA CA . C CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.033 ? hydrog WATSON-CRICK hydrog1 D N3 DT 1 D DT 1 1_555 E N1 DA 9 E DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 D O4 DT 1 D DT 1 1_555 E N6 DA 9 E DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 D N3 DT 2 D DT 2 1_555 E N1 DA 8 E DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 D O4 DT 2 D DT 2 1_555 E N6 DA 8 E DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 D N3 DT 3 D DT 3 1_555 E N1 DA 7 E DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 D O4 DT 3 D DT 3 1_555 E N6 DA 7 E DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 D N3 DT 4 D DT 4 1_555 E N1 DA 6 E DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 D O4 DT 4 D DT 4 1_555 E N6 DA 6 E DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 D N3 DT 5 D DT 5 1_555 E N1 DA 5 E DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 D O4 DT 5 D DT 5 1_555 E N6 DA 5 E DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 D N3 DT 6 D DT 6 1_555 E N1 DA 4 E DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 D O4 DT 6 D DT 6 1_555 E N6 DA 4 E DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 D N3 DT 7 D DT 7 1_555 E N1 DA 3 E DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 D O4 DT 7 D DT 7 1_555 E N6 DA 3 E DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 D N3 DT 8 D DT 8 1_555 E N1 DA 2 E DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 D O4 DT 8 D DT 8 1_555 E N6 DA 2 E DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 D N3 DT 9 D DT 9 1_555 E N1 DA 1 E DA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 D O4 DT 9 D DT 9 1_555 E N6 DA 1 E DA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7C98 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 CA A 1 401 1 CA CA . G 5 ANP A 1 402 2 ANP ANP . H 4 CA B 1 401 3 CA CA . I 5 ANP B 1 402 4 ANP ANP . J 5 ANP C 1 401 5 ANP ANP . K 4 CA C 1 402 6 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . G 5 147.701 142.802 199.565 1 82.76 ? PG ANP 402 A 1 HETATM 2 O O1G ANP . . . G 5 149.098 143.261 199.907 1 82.76 ? O1G ANP 402 A 1 HETATM 3 O O2G ANP . . . G 5 146.887 143.822 198.806 1 82.76 ? O2G ANP 402 A 1 HETATM 4 O O3G ANP . . . G 5 146.966 142.173 200.723 1 82.76 ? O3G ANP 402 A 1 HETATM 5 P PB ANP . . . G 5 149.155 140.28 198.759 1 82.76 ? PB ANP 402 A 1 HETATM 6 O O1B ANP . . . G 5 148.566 139.273 199.715 1 82.76 ? O1B ANP 402 A 1 HETATM 7 O O2B ANP . . . G 5 150.427 140.989 199.154 1 82.76 ? O2B ANP 402 A 1 HETATM 8 N N3B ANP . . . G 5 147.939 141.493 198.431 1 82.76 ? N3B ANP 402 A 1 HETATM 9 P PA ANP . . . G 5 148.618 138.171 197.028 1 82.76 ? PA ANP 402 A 1 HETATM 10 O O1A ANP . . . G 5 147.157 138.472 197.255 1 82.76 ? O1A ANP 402 A 1 HETATM 11 O O2A ANP . . . G 5 149.262 136.992 197.718 1 82.76 ? O2A ANP 402 A 1 HETATM 12 O O3A ANP . . . G 5 149.462 139.49 197.393 1 82.76 ? O3A ANP 402 A 1 HETATM 13 O O5' ANP . . . G 5 148.862 138.022 195.445 1 82.76 ? O5' ANP 402 A 1 HETATM 14 C C5' ANP . . . G 5 147.755 137.953 194.551 1 82.76 ? C5' ANP 402 A 1 HETATM 15 C C4' ANP . . . G 5 148.259 137.87 193.117 1 82.76 ? C4' ANP 402 A 1 HETATM 16 O O4' ANP . . . G 5 148.569 136.513 192.793 1 82.76 ? O4' ANP 402 A 1 HETATM 17 C C3' ANP . . . G 5 147.196 138.346 192.142 1 82.76 ? C3' ANP 402 A 1 HETATM 18 O O3' ANP . . . G 5 147.757 139.346 191.282 1 82.76 ? O3' ANP 402 A 1 HETATM 19 C C2' ANP . . . G 5 146.742 137.108 191.383 1 82.76 ? C2' ANP 402 A 1 HETATM 20 O O2' ANP . . . G 5 146.799 137.278 189.961 1 82.76 ? O2' ANP 402 A 1 HETATM 21 C C1' ANP . . . G 5 147.678 135.987 191.807 1 82.76 ? C1' ANP 402 A 1 HETATM 22 N N9 ANP . . . G 5 146.89 134.873 192.39 1 82.76 ? N9 ANP 402 A 1 HETATM 23 C C8 ANP . . . G 5 146.653 134.68 193.701 1 82.76 ? C8 ANP 402 A 1 HETATM 24 N N7 ANP . . . G 5 145.9 133.57 193.906 1 82.76 ? N7 ANP 402 A 1 HETATM 25 C C5 ANP . . . G 5 145.645 133.028 192.702 1 82.76 ? C5 ANP 402 A 1 HETATM 26 C C6 ANP . . . G 5 144.903 131.849 192.195 1 82.76 ? C6 ANP 402 A 1 HETATM 27 N N6 ANP . . . G 5 144.27 131.002 193.043 1 82.76 ? N6 ANP 402 A 1 HETATM 28 N N1 ANP . . . G 5 144.88 131.647 190.86 1 82.76 ? N1 ANP 402 A 1 HETATM 29 C C2 ANP . . . G 5 145.504 132.48 190.007 1 82.76 ? C2 ANP 402 A 1 HETATM 30 N N3 ANP . . . G 5 146.192 133.567 190.395 1 82.76 ? N3 ANP 402 A 1 HETATM 31 C C4 ANP . . . G 5 146.298 133.892 191.706 1 82.76 ? C4 ANP 402 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 719 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #