data_7C9B # _model_server_result.job_id pesgkY9q5OkKIcBLCetZNw _model_server_result.datetime_utc '2024-12-23 16:40:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7c9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 7C9B # _exptl.entry_id 7C9B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.196 _cell.angle_gamma 90 _cell.entry_id 7C9B _cell.length_a 83.775 _cell.length_b 40.9 _cell.length_c 74.221 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7C9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 92 A GLY 92 1_555 C NA NA . A NA 302 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.286 ? metalc ? metalc2 A O ALA 109 A ALA 109 1_555 E NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc3 A OG SER 125 A SER 125 1_555 C NA NA . A NA 302 1_555 ? ? ? ? B ? ? ? ? ? ? ? 3.042 ? metalc ? metalc4 A OG1 THR 132 A THR 132 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc5 A O SER 134 A SER 134 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc6 A OG1 THR 138 A THR 138 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.133 ? metalc ? metalc7 A OD1 ASP 140 A ASP 140 1_555 C NA NA . A NA 302 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.574 ? metalc ? metalc8 A OD2 ASP 140 A ASP 140 1_555 C NA NA . A NA 302 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.529 ? metalc ? metalc9 A OD2 ASP 140 A ASP 140 1_555 C NA NA . A NA 302 1_555 ? ? ? ? B ? ? ? ? ? ? ? 3.046 ? metalc ? metalc10 A OE2 GLU 175 A GLU 175 1_555 C NA NA . A NA 302 2_555 ? ? ? ? A ? ? ? ? ? ? ? 3.002 ? metalc ? metalc11 B CA CA . A CA 301 1_555 F O HOH . A HOH 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.064 ? metalc ? metalc12 C NA NA . A NA 302 1_555 F O HOH . A HOH 405 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc13 C NA NA . A NA 302 1_555 F O HOH . A HOH 405 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc14 D NA NA . A NA 303 1_555 F O HOH . A HOH 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.802 ? metalc ? metalc15 E NA NA . A NA 304 1_555 F O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.802 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7C9B _atom_sites.fract_transf_matrix[1][1] 0.011937 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005873 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02445 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015016 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 1 CA CA . C 3 NA A 1 302 1 NA NA . D 3 NA A 1 303 2 NA NA . E 3 NA A 1 304 3 NA NA . F 4 HOH A 1 401 111 HOH HOH . F 4 HOH A 2 402 121 HOH HOH . F 4 HOH A 3 403 47 HOH HOH . F 4 HOH A 4 404 170 HOH HOH . F 4 HOH A 5 405 161 HOH HOH . F 4 HOH A 6 406 93 HOH HOH . F 4 HOH A 7 407 149 HOH HOH . F 4 HOH A 8 408 196 HOH HOH . F 4 HOH A 9 409 100 HOH HOH . F 4 HOH A 10 410 87 HOH HOH . F 4 HOH A 11 411 178 HOH HOH . F 4 HOH A 12 412 92 HOH HOH . F 4 HOH A 13 413 85 HOH HOH . F 4 HOH A 14 414 103 HOH HOH . F 4 HOH A 15 415 132 HOH HOH . F 4 HOH A 16 416 73 HOH HOH . F 4 HOH A 17 417 109 HOH HOH . F 4 HOH A 18 418 40 HOH HOH . F 4 HOH A 19 419 94 HOH HOH . F 4 HOH A 20 420 152 HOH HOH . F 4 HOH A 21 421 114 HOH HOH . F 4 HOH A 22 422 52 HOH HOH . F 4 HOH A 23 423 26 HOH HOH . F 4 HOH A 24 424 133 HOH HOH . F 4 HOH A 25 425 54 HOH HOH . F 4 HOH A 26 426 90 HOH HOH . F 4 HOH A 27 427 57 HOH HOH . F 4 HOH A 28 428 144 HOH HOH . F 4 HOH A 29 429 74 HOH HOH . F 4 HOH A 30 430 50 HOH HOH . F 4 HOH A 31 431 82 HOH HOH . F 4 HOH A 32 432 162 HOH HOH . F 4 HOH A 33 433 95 HOH HOH . F 4 HOH A 34 434 135 HOH HOH . F 4 HOH A 35 435 23 HOH HOH . F 4 HOH A 36 436 70 HOH HOH . F 4 HOH A 37 437 71 HOH HOH . F 4 HOH A 38 438 163 HOH HOH . F 4 HOH A 39 439 36 HOH HOH . F 4 HOH A 40 440 118 HOH HOH . F 4 HOH A 41 441 67 HOH HOH . F 4 HOH A 42 442 20 HOH HOH . F 4 HOH A 43 443 194 HOH HOH . F 4 HOH A 44 444 8 HOH HOH . F 4 HOH A 45 445 19 HOH HOH . F 4 HOH A 46 446 159 HOH HOH . F 4 HOH A 47 447 37 HOH HOH . F 4 HOH A 48 448 166 HOH HOH . F 4 HOH A 49 449 84 HOH HOH . F 4 HOH A 50 450 31 HOH HOH . F 4 HOH A 51 451 131 HOH HOH . F 4 HOH A 52 452 29 HOH HOH . F 4 HOH A 53 453 12 HOH HOH . F 4 HOH A 54 454 195 HOH HOH . F 4 HOH A 55 455 78 HOH HOH . F 4 HOH A 56 456 7 HOH HOH . F 4 HOH A 57 457 9 HOH HOH . F 4 HOH A 58 458 55 HOH HOH . F 4 HOH A 59 459 43 HOH HOH . F 4 HOH A 60 460 13 HOH HOH . F 4 HOH A 61 461 197 HOH HOH . F 4 HOH A 62 462 22 HOH HOH . F 4 HOH A 63 463 182 HOH HOH . F 4 HOH A 64 464 105 HOH HOH . F 4 HOH A 65 465 24 HOH HOH . F 4 HOH A 66 466 42 HOH HOH . F 4 HOH A 67 467 3 HOH HOH . F 4 HOH A 68 468 190 HOH HOH . F 4 HOH A 69 469 69 HOH HOH . F 4 HOH A 70 470 41 HOH HOH . F 4 HOH A 71 471 189 HOH HOH . F 4 HOH A 72 472 81 HOH HOH . F 4 HOH A 73 473 46 HOH HOH . F 4 HOH A 74 474 18 HOH HOH . F 4 HOH A 75 475 88 HOH HOH . F 4 HOH A 76 476 187 HOH HOH . F 4 HOH A 77 477 4 HOH HOH . F 4 HOH A 78 478 38 HOH HOH . F 4 HOH A 79 479 5 HOH HOH . F 4 HOH A 80 480 1 HOH HOH . F 4 HOH A 81 481 183 HOH HOH . F 4 HOH A 82 482 51 HOH HOH . F 4 HOH A 83 483 65 HOH HOH . F 4 HOH A 84 484 68 HOH HOH . F 4 HOH A 85 485 25 HOH HOH . F 4 HOH A 86 486 17 HOH HOH . F 4 HOH A 87 487 140 HOH HOH . F 4 HOH A 88 488 126 HOH HOH . F 4 HOH A 89 489 142 HOH HOH . F 4 HOH A 90 490 168 HOH HOH . F 4 HOH A 91 491 16 HOH HOH . F 4 HOH A 92 492 96 HOH HOH . F 4 HOH A 93 493 34 HOH HOH . F 4 HOH A 94 494 59 HOH HOH . F 4 HOH A 95 495 14 HOH HOH . F 4 HOH A 96 496 157 HOH HOH . F 4 HOH A 97 497 66 HOH HOH . F 4 HOH A 98 498 39 HOH HOH . F 4 HOH A 99 499 60 HOH HOH . F 4 HOH A 100 500 76 HOH HOH . F 4 HOH A 101 501 80 HOH HOH . F 4 HOH A 102 502 154 HOH HOH . F 4 HOH A 103 503 148 HOH HOH . F 4 HOH A 104 504 124 HOH HOH . F 4 HOH A 105 505 117 HOH HOH . F 4 HOH A 106 506 28 HOH HOH . F 4 HOH A 107 507 21 HOH HOH . F 4 HOH A 108 508 136 HOH HOH . F 4 HOH A 109 509 15 HOH HOH . F 4 HOH A 110 510 130 HOH HOH . F 4 HOH A 111 511 177 HOH HOH . F 4 HOH A 112 512 89 HOH HOH . F 4 HOH A 113 513 129 HOH HOH . F 4 HOH A 114 514 63 HOH HOH . F 4 HOH A 115 515 86 HOH HOH . F 4 HOH A 116 516 102 HOH HOH . F 4 HOH A 117 517 64 HOH HOH . F 4 HOH A 118 518 49 HOH HOH . F 4 HOH A 119 519 10 HOH HOH . F 4 HOH A 120 520 137 HOH HOH . F 4 HOH A 121 521 45 HOH HOH . F 4 HOH A 122 522 112 HOH HOH . F 4 HOH A 123 523 2 HOH HOH . F 4 HOH A 124 524 58 HOH HOH . F 4 HOH A 125 525 83 HOH HOH . F 4 HOH A 126 526 48 HOH HOH . F 4 HOH A 127 527 91 HOH HOH . F 4 HOH A 128 528 11 HOH HOH . F 4 HOH A 129 529 191 HOH HOH . F 4 HOH A 130 530 184 HOH HOH . F 4 HOH A 131 531 119 HOH HOH . F 4 HOH A 132 532 72 HOH HOH . F 4 HOH A 133 533 188 HOH HOH . F 4 HOH A 134 534 175 HOH HOH . F 4 HOH A 135 535 104 HOH HOH . F 4 HOH A 136 536 139 HOH HOH . F 4 HOH A 137 537 145 HOH HOH . F 4 HOH A 138 538 6 HOH HOH . F 4 HOH A 139 539 169 HOH HOH . F 4 HOH A 140 540 153 HOH HOH . F 4 HOH A 141 541 122 HOH HOH . F 4 HOH A 142 542 110 HOH HOH . F 4 HOH A 143 543 123 HOH HOH . F 4 HOH A 144 544 53 HOH HOH . F 4 HOH A 145 545 27 HOH HOH . F 4 HOH A 146 546 33 HOH HOH . F 4 HOH A 147 547 156 HOH HOH . F 4 HOH A 148 548 77 HOH HOH . F 4 HOH A 149 549 185 HOH HOH . F 4 HOH A 150 550 193 HOH HOH . F 4 HOH A 151 551 30 HOH HOH . F 4 HOH A 152 552 113 HOH HOH . F 4 HOH A 153 553 167 HOH HOH . F 4 HOH A 154 554 164 HOH HOH . F 4 HOH A 155 555 173 HOH HOH . F 4 HOH A 156 556 150 HOH HOH . F 4 HOH A 157 557 120 HOH HOH . F 4 HOH A 158 558 61 HOH HOH . F 4 HOH A 159 559 179 HOH HOH . F 4 HOH A 160 560 128 HOH HOH . F 4 HOH A 161 561 165 HOH HOH . F 4 HOH A 162 562 125 HOH HOH . F 4 HOH A 163 563 147 HOH HOH . F 4 HOH A 164 564 134 HOH HOH . F 4 HOH A 165 565 160 HOH HOH . F 4 HOH A 166 566 180 HOH HOH . F 4 HOH A 167 567 99 HOH HOH . F 4 HOH A 168 568 155 HOH HOH . F 4 HOH A 169 569 172 HOH HOH . F 4 HOH A 170 570 192 HOH HOH . F 4 HOH A 171 571 176 HOH HOH . F 4 HOH A 172 572 141 HOH HOH . F 4 HOH A 173 573 98 HOH HOH . F 4 HOH A 174 574 174 HOH HOH . F 4 HOH A 175 575 35 HOH HOH . F 4 HOH A 176 576 138 HOH HOH . F 4 HOH A 177 577 115 HOH HOH . F 4 HOH A 178 578 186 HOH HOH . F 4 HOH A 179 579 56 HOH HOH . F 4 HOH A 180 580 151 HOH HOH . F 4 HOH A 181 581 171 HOH HOH . F 4 HOH A 182 582 101 HOH HOH . F 4 HOH A 183 583 97 HOH HOH . F 4 HOH A 184 584 143 HOH HOH . F 4 HOH A 185 585 44 HOH HOH . F 4 HOH A 186 586 181 HOH HOH . F 4 HOH A 187 587 75 HOH HOH . F 4 HOH A 188 588 106 HOH HOH . F 4 HOH A 189 589 32 HOH HOH . F 4 HOH A 190 590 107 HOH HOH . F 4 HOH A 191 591 79 HOH HOH . F 4 HOH A 192 592 158 HOH HOH . F 4 HOH A 193 593 108 HOH HOH . F 4 HOH A 194 594 127 HOH HOH . F 4 HOH A 195 595 146 HOH HOH . F 4 HOH A 196 596 62 HOH HOH . F 4 HOH A 197 597 116 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -4.639 _atom_site.Cartn_y -8.117 _atom_site.Cartn_z 11.055 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.8 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #