data_7C9I # _model_server_result.job_id drV8jiYy20lYzXXKrHvxDA _model_server_result.datetime_utc '2024-11-14 08:09:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7c9i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":302}' # _entry.id 7C9I # _exptl.entry_id 7C9I _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7C9I _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7C9I _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 S N N ? 10 T N N ? 10 U N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 6 4 3 BMA BMA C1 O1 . O3 HO3 . sing 5 ? 6 5 3 BMA BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 E 1 NAG A 1699 NAG 5 n E NAG 2 E 2 NAG A 1700 NAG 6 n F NAG 1 F 1 NAG A 1701 NAG 6 n F NAG 2 F 2 NAG A 1702 NAG 6 n F BMA 3 F 3 BMA A 1716 BMA 6 n F BMA 4 F 4 BMA A 1718 BMA 6 n F BMA 5 F 5 BMA A 1717 BMA 5 n G NAG 1 G 1 NAG A 1703 NAG 5 n G NAG 2 G 2 NAG A 1704 NAG 5 n H NAG 1 H 1 NAG A 1706 NAG 5 n H NAG 2 H 2 NAG A 1707 NAG 5 n I NAG 1 I 1 NAG A 1708 NAG 5 n I NAG 2 I 2 NAG A 1709 NAG 5 n J NAG 1 J 1 NAG A 1710 NAG 5 n J NAG 2 J 2 NAG A 1711 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 50 A CYS 50 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 140 A CYS 140 1_555 A SG CYS 159 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 230 A CYS 230 1_555 A SG CYS 248 A CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 A SG CYS 586 A CYS 586 1_555 A SG CYS 620 A CYS 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 45 A ASN 45 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 A ND2 ASN 55 A ASN 55 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale3 A ND2 ASN 187 A ASN 187 1_555 O C1 NAG . A NAG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 A ND2 ASN 264 A ASN 264 1_555 N C1 NAG . A NAG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale5 A ND2 ASN 387 A ASN 387 1_555 K C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale6 A ND2 ASN 435 A ASN 435 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale7 A ND2 ASN 464 A ASN 464 1_555 L C1 NAG . A NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale8 A ND2 ASN 506 A ASN 506 1_555 M C1 NAG . A NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale9 A ND2 ASN 530 A ASN 530 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale10 A ND2 ASN 562 A ASN 562 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale11 A ND2 ASN 573 A ASN 573 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale12 A ND2 ASN 580 A ASN 580 1_555 P C1 NAG . A NAG 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale13 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale14 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale15 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale16 F O3 BMA . F BMA 3 1_555 F C1 BMA . F BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale17 F O6 BMA . F BMA 3 1_555 F C1 BMA . F BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale18 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale19 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale20 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale21 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 94 n n C1 C10 CLR sing 95 n n C1 H11 CLR sing 96 n n C1 H12 CLR sing 97 n n C2 C3 CLR sing 98 n n C2 H21 CLR sing 99 n n C2 H22 CLR sing 100 n n C3 C4 CLR sing 101 n n C3 O1 CLR sing 102 n n C3 H3 CLR sing 103 n n C4 C5 CLR sing 104 n n C4 H41 CLR sing 105 n n C4 H42 CLR sing 106 n n C5 C6 CLR doub 107 n n C5 C10 CLR sing 108 n n C6 C7 CLR sing 109 n n C6 H6 CLR sing 110 n n C7 C8 CLR sing 111 n n C7 H71 CLR sing 112 n n C7 H72 CLR sing 113 n n C8 C9 CLR sing 114 n n C8 C14 CLR sing 115 n n C8 H8 CLR sing 116 n n C9 C10 CLR sing 117 n n C9 C11 CLR sing 118 n n C9 H9 CLR sing 119 n n C10 C19 CLR sing 120 n n C11 C12 CLR sing 121 n n C11 H111 CLR sing 122 n n C11 H112 CLR sing 123 n n C12 C13 CLR sing 124 n n C12 H121 CLR sing 125 n n C12 H122 CLR sing 126 n n C13 C14 CLR sing 127 n n C13 C17 CLR sing 128 n n C13 C18 CLR sing 129 n n C14 C15 CLR sing 130 n n C14 H14 CLR sing 131 n n C15 C16 CLR sing 132 n n C15 H151 CLR sing 133 n n C15 H152 CLR sing 134 n n C16 C17 CLR sing 135 n n C16 H161 CLR sing 136 n n C16 H162 CLR sing 137 n n C17 C20 CLR sing 138 n n C17 H17 CLR sing 139 n n C18 H181 CLR sing 140 n n C18 H182 CLR sing 141 n n C18 H183 CLR sing 142 n n C19 H191 CLR sing 143 n n C19 H192 CLR sing 144 n n C19 H193 CLR sing 145 n n C20 C21 CLR sing 146 n n C20 C22 CLR sing 147 n n C20 H20 CLR sing 148 n n C21 H211 CLR sing 149 n n C21 H212 CLR sing 150 n n C21 H213 CLR sing 151 n n C22 C23 CLR sing 152 n n C22 H221 CLR sing 153 n n C22 H222 CLR sing 154 n n C23 C24 CLR sing 155 n n C23 H231 CLR sing 156 n n C23 H232 CLR sing 157 n n C24 C25 CLR sing 158 n n C24 H241 CLR sing 159 n n C24 H242 CLR sing 160 n n C25 C26 CLR sing 161 n n C25 C27 CLR sing 162 n n C25 H25 CLR sing 163 n n C26 H261 CLR sing 164 n n C26 H262 CLR sing 165 n n C26 H263 CLR sing 166 n n C27 H271 CLR sing 167 n n C27 H272 CLR sing 168 n n C27 H273 CLR sing 169 n n O1 H1 CLR sing 170 n n # _atom_sites.entry_id 7C9I _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 7 NAG A 1 801 1705 NAG NAG . L 7 NAG A 1 802 1712 NAG NAG . M 7 NAG A 1 803 1713 NAG NAG . N 7 NAG A 1 804 1714 NAG NAG . O 7 NAG A 1 805 1715 NAG NAG . P 7 NAG A 1 806 1719 NAG NAG . Q 8 PC1 B 1 501 501 PC1 PC1 . R 9 FTO B 1 502 601 FTO LIG . S 10 CLR C 1 301 301 CLR CLR . T 10 CLR C 1 302 401 CLR CLR . U 10 CLR C 1 303 501 CLR CLR . V 8 PC1 C 1 304 601 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . T 10 205.686 142.447 158.01 1 53.69 ? C1 CLR 302 C 1 HETATM 2 C C2 CLR . . . T 10 204.859 142.533 159.297 1 53.69 ? C2 CLR 302 C 1 HETATM 3 C C3 CLR . . . T 10 204.977 143.884 159.961 1 53.69 ? C3 CLR 302 C 1 HETATM 4 C C4 CLR . . . T 10 204.581 144.969 158.98 1 53.69 ? C4 CLR 302 C 1 HETATM 5 C C5 CLR . . . T 10 205.403 144.895 157.713 1 53.69 ? C5 CLR 302 C 1 HETATM 6 C C6 CLR . . . T 10 206.123 145.933 157.315 1 53.69 ? C6 CLR 302 C 1 HETATM 7 C C7 CLR . . . T 10 206.898 145.985 156.039 1 53.69 ? C7 CLR 302 C 1 HETATM 8 C C8 CLR . . . T 10 206.49 144.869 155.086 1 53.69 ? C8 CLR 302 C 1 HETATM 9 C C9 CLR . . . T 10 206.448 143.534 155.854 1 53.69 ? C9 CLR 302 C 1 HETATM 10 C C10 CLR . . . T 10 205.372 143.557 156.979 1 53.69 ? C10 CLR 302 C 1 HETATM 11 C C11 CLR . . . T 10 206.3 142.332 154.903 1 53.69 ? C11 CLR 302 C 1 HETATM 12 C C12 CLR . . . T 10 207.29 142.349 153.729 1 53.69 ? C12 CLR 302 C 1 HETATM 13 C C13 CLR . . . T 10 207.179 143.645 152.92 1 53.69 ? C13 CLR 302 C 1 HETATM 14 C C14 CLR . . . T 10 207.464 144.783 153.919 1 53.69 ? C14 CLR 302 C 1 HETATM 15 C C15 CLR . . . T 10 207.667 146.007 153.038 1 53.69 ? C15 CLR 302 C 1 HETATM 16 C C16 CLR . . . T 10 208.484 145.453 151.859 1 53.69 ? C16 CLR 302 C 1 HETATM 17 C C17 CLR . . . T 10 208.271 143.912 151.838 1 53.69 ? C17 CLR 302 C 1 HETATM 18 C C18 CLR . . . T 10 205.79 143.759 152.274 1 53.69 ? C18 CLR 302 C 1 HETATM 19 C C19 CLR . . . T 10 203.955 143.361 156.414 1 53.69 ? C19 CLR 302 C 1 HETATM 20 C C20 CLR . . . T 10 208.091 143.314 150.426 1 53.69 ? C20 CLR 302 C 1 HETATM 21 C C21 CLR . . . T 10 208.97 142.091 150.175 1 53.69 ? C21 CLR 302 C 1 HETATM 22 C C22 CLR . . . T 10 208.273 144.354 149.307 1 53.69 ? C22 CLR 302 C 1 HETATM 23 C C23 CLR . . . T 10 207.74 143.936 147.959 1 53.69 ? C23 CLR 302 C 1 HETATM 24 C C24 CLR . . . T 10 208.532 144.501 146.805 1 53.69 ? C24 CLR 302 C 1 HETATM 25 C C25 CLR . . . T 10 208.51 146.02 146.652 1 53.69 ? C25 CLR 302 C 1 HETATM 26 C C26 CLR . . . T 10 207.116 146.521 146.31 1 53.69 ? C26 CLR 302 C 1 HETATM 27 C C27 CLR . . . T 10 209.511 146.483 145.606 1 53.69 ? C27 CLR 302 C 1 HETATM 28 O O1 CLR . . . T 10 204.134 143.951 161.119 1 53.69 ? O1 CLR 302 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #