data_7C9M
#
_model_server_result.job_id            2KSlMnxdpCzZk5ZwOIIToA 
_model_server_result.datetime_utc      '2024-10-19 10:35:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7c9m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":302}' 
#
_entry.id    7C9M 
#
_exptl.entry_id    7C9M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              297.334 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-DEOXY-5'-METHYLTHIOADENOSINE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7C9M 
_cell.length_a            60.519 
_cell.length_b            96.684 
_cell.length_c            211.428 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7C9M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,M 1 1 
B,G,H,N 2 1 
C,I,J,O 3 1 
D,K,L,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            C 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             124 
_struct_conn.ptnr1_auth_asym_id             C 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              116 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            D 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             124 
_struct_conn.ptnr2_auth_asym_id             D 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              116 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.031 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C11 H15 N5 O3 S' 
_chem_comp.formula_weight    297.334 
_chem_comp.id                MTA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-DEOXY-5'-METHYLTHIOADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CS S5' MTA sing 271 n n 
CS HCS1 MTA sing 272 n n 
CS HCS2 MTA sing 273 n n 
CS HCS3 MTA sing 274 n n 
S5' C5' MTA sing 275 n n 
C5' C4' MTA sing 276 n n 
C5' "H5'1" MTA sing 277 n n 
C5' "H5'2" MTA sing 278 n n 
C4' O4' MTA sing 279 n n 
C4' C3' MTA sing 280 n n 
C4' H4' MTA sing 281 n n 
O4' C1' MTA sing 282 n n 
C2' O2' MTA sing 283 n n 
C2' C3' MTA sing 284 n n 
C2' C1' MTA sing 285 n n 
C2' H2' MTA sing 286 n n 
O2' HO2' MTA sing 287 n n 
C3' O3' MTA sing 288 n n 
C3' H3' MTA sing 289 n n 
O3' H3T MTA sing 290 n n 
C1' N9 MTA sing 291 n n 
C1' H1' MTA sing 292 n n 
N9 C8 MTA sing 293 n y 
N9 C4 MTA sing 294 n y 
C8 N7 MTA doub 295 n y 
C8 H8 MTA sing 296 n n 
N7 C5 MTA sing 297 n y 
C5 C6 MTA sing 298 n y 
C5 C4 MTA doub 299 n y 
C6 N6 MTA sing 300 n n 
C6 N1 MTA doub 301 n y 
N6 H61 MTA sing 302 n n 
N6 H62 MTA sing 303 n n 
N1 C2 MTA sing 304 n y 
C2 N3 MTA doub 305 n y 
C2 H2 MTA sing 306 n n 
N3 C4 MTA sing 307 n y 
#
_atom_sites.entry_id                     7C9M 
_atom_sites.fract_transf_matrix[1][1]    0.016524 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010343 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00473 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FN6 A 1 301 1 FN6 XNA . 
F 3 MTA A 1 302 1 MTA MTA . 
G 2 FN6 B 1 301 2 FN6 XNA . 
H 3 MTA B 1 302 2 MTA MTA . 
I 2 FN6 C 1 301 3 FN6 XNA . 
J 3 MTA C 1 302 3 MTA MTA . 
K 2 FN6 D 1 301 4 FN6 XNA . 
L 3 MTA D 1 302 4 MTA MTA . 
M 4 HOH A 1 401 18 HOH HOH . 
M 4 HOH A 2 402 6 HOH HOH . 
M 4 HOH A 3 403 9 HOH HOH . 
M 4 HOH A 4 404 19 HOH HOH . 
M 4 HOH A 5 405 7 HOH HOH . 
M 4 HOH A 6 406 8 HOH HOH . 
M 4 HOH A 7 407 15 HOH HOH . 
N 4 HOH B 1 401 23 HOH HOH . 
N 4 HOH B 2 402 3 HOH HOH . 
N 4 HOH B 3 403 1 HOH HOH . 
N 4 HOH B 4 404 12 HOH HOH . 
O 4 HOH C 1 401 22 HOH HOH . 
O 4 HOH C 2 402 11 HOH HOH . 
O 4 HOH C 3 403 4 HOH HOH . 
O 4 HOH C 4 404 5 HOH HOH . 
O 4 HOH C 5 405 20 HOH HOH . 
O 4 HOH C 6 406 14 HOH HOH . 
O 4 HOH C 7 407 21 HOH HOH . 
O 4 HOH C 8 408 17 HOH HOH . 
P 4 HOH D 1 401 13 HOH HOH . 
P 4 HOH D 2 402 16 HOH HOH . 
P 4 HOH D 3 403 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CS MTA . . . H 3 55.706 55.261 104.206 1 77.79 ? CS MTA 302 B 1 
HETATM 2 S S5' MTA . . . H 3 57.07 54.163 104.045 1 77.42 ? S5' MTA 302 B 1 
HETATM 3 C C5' MTA . . . H 3 58.064 55.149 102.975 1 77.24 ? C5' MTA 302 B 1 
HETATM 4 C C4' MTA . . . H 3 59.525 54.751 103.139 1 77 ? C4' MTA 302 B 1 
HETATM 5 O O4' MTA . . . H 3 60.304 55.275 102.062 1 76.1 ? O4' MTA 302 B 1 
HETATM 6 C C2' MTA . . . H 3 61.413 55.999 104.006 1 76.45 ? C2' MTA 302 B 1 
HETATM 7 O O2' MTA . . . H 3 62.544 55.622 104.799 1 77.67 ? O2' MTA 302 B 1 
HETATM 8 C C3' MTA . . . H 3 60.145 55.276 104.43 1 76.4 ? C3' MTA 302 B 1 
HETATM 9 O O3' MTA . . . H 3 60.415 54.19 105.325 1 76.78 ? O3' MTA 302 B 1 
HETATM 10 C C1' MTA . . . H 3 61.605 55.603 102.546 1 75.41 ? C1' MTA 302 B 1 
HETATM 11 N N9 MTA . . . H 3 62.223 56.651 101.693 1 74.09 ? N9 MTA 302 B 1 
HETATM 12 C C8 MTA . . . H 3 62.061 57.989 101.777 1 73.64 ? C8 MTA 302 B 1 
HETATM 13 N N7 MTA . . . H 3 62.786 58.619 100.818 1 73.66 ? N7 MTA 302 B 1 
HETATM 14 C C5 MTA . . . H 3 63.423 57.678 100.101 1 72.89 ? C5 MTA 302 B 1 
HETATM 15 C C6 MTA . . . H 3 64.349 57.658 98.945 1 72.73 ? C6 MTA 302 B 1 
HETATM 16 N N6 MTA . . . H 3 64.737 58.816 98.361 1 73.22 ? N6 MTA 302 B 1 
HETATM 17 N N1 MTA . . . H 3 64.785 56.454 98.501 1 72.7 ? N1 MTA 302 B 1 
HETATM 18 C C2 MTA . . . H 3 64.4 55.295 99.076 1 72.24 ? C2 MTA 302 B 1 
HETATM 19 N N3 MTA . . . H 3 63.562 55.248 100.132 1 72.57 ? N3 MTA 302 B 1 
HETATM 20 C C4 MTA . . . H 3 63.048 56.381 100.679 1 73.34 ? C4 MTA 302 B 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#