data_7C9Y # _model_server_result.job_id TAgEC_C68wCPp1J9iHqPwQ _model_server_result.datetime_utc '2025-07-19 20:02:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7c9y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 7C9Y # _exptl.entry_id 7C9Y _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 228.371 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MYRISTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 240-meric 240 'complete icosahedral assembly' 1 ? tetrameric 4 'icosahedral asymmetric unit' 2 ? eicosameric 20 'icosahedral pentamer' 3 ? 24-meric 24 'icosahedral 23 hexamer' 4 ? tetrameric 4 'icosahedral asymmetric unit, std point frame' 5 ? 240-meric 240 'crystal asymmetric unit, crystal frame' 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 (1-60) A,B,C,D,E,F 2 1 A,B,C,D,E,F 3 (1-5) A,B,C,D,E,F 4 (1,2,6,10,23,24) A,B,C,D,E,F 5 P A,B,C,D,E,F 6 (X0)(1-60) # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.16246 0.5 0.850651 -0.951057 -0.309017 0 0.262866 -0.809017 0.525731 -287.66102 305.06381 4.94376 X0 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.361803 -0.262866 -0.894427 0.587785 0.809017 0 0.723607 -0.525731 0.447214 434.68796 -96.06584 85.9239 3 'point symmetry operation' ? ? -0.67082 0.16246 -0.723607 0.688191 0.5 -0.525731 0.276393 -0.850651 -0.447214 540.35928 81.71845 489.39819 4 'point symmetry operation' ? ? -0.67082 0.688191 0.276393 0.16246 0.5 -0.850651 -0.723607 -0.525731 -0.447214 170.97978 287.66102 652.83512 5 'point symmetry operation' ? ? 0.361803 0.587785 0.723607 -0.262866 0.809017 -0.525731 -0.894427 0 0.447214 -162.98062 237.15624 350.37041 6 'point symmetry operation' ? ? -0.861803 -0.425325 0.276393 -0.425325 0.309017 -0.850651 0.276393 -0.850651 -0.447214 486.79909 476.20082 489.39819 7 'point symmetry operation' ? ? -0.361803 -0.262866 0.894427 -0.587785 0.809017 0 -0.723607 -0.525731 -0.447214 176.79152 188.5398 652.83512 8 'point symmetry operation' ? ? 0.361803 -0.587785 0.723607 0.262866 0.809017 0.525731 -0.894427 0 0.447214 121.62499 -144.68227 350.37043 9 'point symmetry operation' ? ? 0.309017 -0.951057 0 0.951057 0.309017 0 0 0 1 397.53777 -62.96381 0.00003 10 'point symmetry operation' ? ? -0.447214 -0.850651 -0.276393 0.525731 0 -0.850651 0.723607 -0.525731 0.447214 623.22778 320.76304 85.92391 11 'point symmetry operation' ? ? 0.809017 0.587785 0 0.587785 -0.809017 0 0 0 -1 -96.06585 295.66019 484.19997 12 'point symmetry operation' ? ? 0.638197 0.262866 -0.723607 -0.262866 -0.809017 -0.525731 -0.723607 0.525731 -0.447214 199.13803 628.88226 398.27612 13 'point symmetry operation' ? ? -0.138197 0.425325 -0.894427 -0.951057 -0.309017 0 -0.276393 0.850651 0.447214 389.12695 547.16381 -5.19815 14 'point symmetry operation' ? ? -0.447214 0.850651 -0.276393 -0.525731 0 0.850651 0.723607 0.525731 0.447214 211.34268 163.43695 -168.63512 15 'point symmetry operation' ? ? 0.138197 0.951057 0.276393 0.425325 -0.309017 0.850651 0.894427 0 -0.447214 -88.52296 7.99917 133.82956 16 'point symmetry operation' ? ? -0.947214 -0.16246 -0.276393 -0.16246 -0.5 0.850651 -0.276393 0.850651 0.447214 577.66676 196.53897 -5.19814 17 'point symmetry operation' ? ? -0.638197 0.262866 0.723607 0.262866 -0.809017 0.525731 0.723607 0.525731 0.447214 157.78248 247.04376 -168.63512 18 'point symmetry operation' ? ? 0.447213 0 0.894427 0 -1 0 0.894427 0 -0.447213 -82.71122 484.2 133.82956 19 'point symmetry operation' ? ? 0.809017 -0.587785 0 -0.587785 -0.809017 0 0 0 -1 188.53977 580.26583 484.19999 20 'point symmetry operation' ? ? -0.052786 -0.688191 -0.723607 -0.688191 -0.5 0.525731 -0.723607 0.525731 -0.447214 596.67581 402.48154 398.27615 21 'point symmetry operation' ? ? -0.138197 -0.425325 -0.894427 0.951057 -0.309017 0 -0.276393 -0.850651 0.447214 595.06948 86.66221 406.68698 22 'point symmetry operation' ? ? -0.947214 0.16246 -0.276393 0.16246 -0.5 -0.850651 -0.276393 -0.850651 0.447214 499.00368 529.76102 406.68697 23 'point symmetry operation' ? ? -0.447214 0.525731 0.723607 -0.850651 0 -0.525731 -0.276393 -0.850651 0.447214 47.90571 575.32207 406.68694 24 'point symmetry operation' ? ? 0.67082 0.16246 0.723607 -0.688191 0.5 0.525731 -0.276393 -0.850651 0.447214 -134.82237 160.38154 406.68693 25 'point symmetry operation' ? ? 0.861803 -0.425325 -0.276393 0.425325 0.309017 0.850651 -0.276393 -0.850651 0.447214 203.34344 -141.62686 406.68695 26 'point symmetry operation' ? ? 0.052786 0.688191 0.723607 -0.688191 -0.5 0.525731 0.723607 -0.525731 0.447214 -112.47581 402.48154 85.92386 27 'point symmetry operation' ? ? 0.947214 0.16246 0.276393 -0.16246 -0.5 0.850651 0.276393 -0.850651 -0.447214 -93.46676 196.53898 489.39815 28 'point symmetry operation' ? ? 0.638197 -0.262866 -0.723607 0.262866 -0.809017 0.525731 -0.723607 -0.525731 -0.447214 326.41752 247.04376 652.83513 29 'point symmetry operation' ? ? -0.447213 0 -0.894427 0 -1 0 -0.894427 0 0.447213 566.91123 484.19999 350.37045 30 'point symmetry operation' ? ? -0.809017 0.587785 0 -0.587785 -0.809017 0 0 0 1 295.66023 580.26583 0.00002 31 'point symmetry operation' ? ? -0.361803 0.262866 0.894427 0.587785 0.809017 0 -0.723607 0.525731 -0.447214 49.51203 -96.06583 398.27612 32 'point symmetry operation' ? ? 0.67082 -0.16246 0.723607 0.688191 0.5 -0.525731 -0.276393 0.850651 0.447214 -56.15928 81.71846 -5.19818 33 'point symmetry operation' ? ? 0.67082 -0.688191 -0.276393 0.16246 0.5 -0.850651 0.723607 0.525731 0.447214 313.22022 287.66102 -168.63511 34 'point symmetry operation' ? ? -0.361803 -0.587785 -0.723607 -0.262866 0.809017 -0.525731 0.894427 0 -0.447214 647.18062 237.15624 133.8296 35 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 484.2 0 484.20001 36 'point symmetry operation' ? ? 0.447214 -0.525731 -0.723607 -0.850651 0 -0.525731 0.276393 0.850651 -0.447214 436.29429 575.32207 77.51307 37 'point symmetry operation' ? ? -0.67082 -0.16246 -0.723607 -0.688191 0.5 0.525731 0.276393 0.850651 -0.447214 619.02236 160.38154 77.51308 38 'point symmetry operation' ? ? -0.861803 0.425325 0.276393 0.425325 0.309017 0.850651 0.276393 0.850651 -0.447214 280.85655 -141.62686 77.51306 39 'point symmetry operation' ? ? 0.138197 0.425325 0.894427 0.951057 -0.309017 0 0.276393 0.850651 -0.447214 -110.86948 86.66222 77.51303 40 'point symmetry operation' ? ? 0.947214 -0.16246 0.276393 0.16246 -0.5 -0.850651 0.276393 0.850651 -0.447214 -14.80368 529.76102 77.51304 41 'point symmetry operation' ? ? -0.138197 0.951057 -0.276393 -0.425325 -0.309017 -0.850651 -0.894427 0 0.447214 112.2214 625.82685 350.37042 42 'point symmetry operation' ? ? 0.309017 0.951057 0 -0.951057 0.309017 0 0 0 1 -62.96378 397.53778 0 43 'point symmetry operation' ? ? 0.67082 0.688191 -0.276393 -0.16246 0.5 0.850651 0.723607 -0.525731 0.447214 -20.00186 -45.56102 85.92387 44 'point symmetry operation' ? ? 0.447214 0.525731 -0.723607 0.850651 0 0.525731 0.276393 -0.850651 -0.447214 181.73526 -91.12207 489.39817 45 'point symmetry operation' ? ? -0.052786 0.688191 -0.723607 0.688191 -0.5 -0.525731 -0.723607 -0.525731 -0.447214 263.45373 323.81845 652.83513 46 'point symmetry operation' ? ? -0.361803 0.587785 -0.723607 0.262866 0.809017 0.525731 0.894427 0 -0.447214 362.575 -144.68227 133.82959 47 'point symmetry operation' ? ? -0.309017 0.951057 0 0.951057 0.309017 0 0 0 -1 86.66222 -62.96381 484.19999 48 'point symmetry operation' ? ? 0.447214 0.850651 0.276393 0.525731 0 -0.850651 -0.723607 0.525731 -0.447214 -139.02778 320.76304 398.2761 49 'point symmetry operation' ? ? 0.861803 0.425325 -0.276393 -0.425325 0.309017 -0.850651 -0.276393 0.850651 0.447214 -2.59909 476.20083 -5.19818 50 'point symmetry operation' ? ? 0.361803 0.262866 -0.894427 -0.587785 0.809017 0 0.723607 0.525731 0.447214 307.40848 188.5398 -168.63511 51 'point symmetry operation' ? ? 0.447214 -0.850651 0.276393 -0.525731 0 0.850651 -0.723607 -0.525731 -0.447214 272.85732 163.43695 652.83513 52 'point symmetry operation' ? ? -0.138197 -0.951057 -0.276393 0.425325 -0.309017 0.850651 -0.894427 0 0.447214 572.72296 7.99917 350.37045 53 'point symmetry operation' ? ? -0.809017 -0.587785 0 0.587785 -0.809017 0 0 0 1 580.26585 295.66019 0.00004 54 'point symmetry operation' ? ? -0.638197 -0.262866 0.723607 -0.262866 -0.809017 -0.525731 0.723607 -0.525731 0.447214 285.06197 628.88226 85.92388 55 'point symmetry operation' ? ? 0.138197 -0.425325 0.894427 -0.951057 -0.309017 0 0.276393 -0.850651 -0.447214 95.07305 547.16381 489.39816 56 'point symmetry operation' ? ? 0.052786 -0.688191 0.723607 0.688191 -0.5 -0.525731 0.723607 0.525731 0.447214 220.74627 323.81845 -168.63512 57 'point symmetry operation' ? ? 0.138197 -0.951057 0.276393 -0.425325 -0.309017 -0.850651 0.894427 0 -0.447214 371.9786 625.82685 133.82958 58 'point symmetry operation' ? ? -0.309017 -0.951057 0 -0.951057 0.309017 0 0 0 -1 547.16378 397.53778 484.20001 59 'point symmetry operation' ? ? -0.67082 -0.688191 0.276393 -0.16246 0.5 0.850651 -0.723607 0.525731 -0.447214 504.20185 -45.56102 398.27614 60 'point symmetry operation' ? ? -0.447214 -0.525731 0.723607 0.850651 0 0.525731 -0.276393 0.850651 0.447214 302.46473 -91.12207 -5.19816 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H28 O2' _chem_comp.formula_weight 228.371 _chem_comp.id MYR _chem_comp.mon_nstd_flag . _chem_comp.name 'MYRISTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MYR doub 235 n n C1 O2 MYR sing 236 n n C1 C2 MYR sing 237 n n O2 HO2 MYR sing 238 n n C2 C3 MYR sing 239 n n C2 H21 MYR sing 240 n n C2 H22 MYR sing 241 n n C3 C4 MYR sing 242 n n C3 H31 MYR sing 243 n n C3 H32 MYR sing 244 n n C4 C5 MYR sing 245 n n C4 H41 MYR sing 246 n n C4 H42 MYR sing 247 n n C5 C6 MYR sing 248 n n C5 H51 MYR sing 249 n n C5 H52 MYR sing 250 n n C6 C7 MYR sing 251 n n C6 H61 MYR sing 252 n n C6 H62 MYR sing 253 n n C7 C8 MYR sing 254 n n C7 H71 MYR sing 255 n n C7 H72 MYR sing 256 n n C8 C9 MYR sing 257 n n C8 H81 MYR sing 258 n n C8 H82 MYR sing 259 n n C9 C10 MYR sing 260 n n C9 H91 MYR sing 261 n n C9 H92 MYR sing 262 n n C10 C11 MYR sing 263 n n C10 H101 MYR sing 264 n n C10 H102 MYR sing 265 n n C11 C12 MYR sing 266 n n C11 H111 MYR sing 267 n n C11 H112 MYR sing 268 n n C12 C13 MYR sing 269 n n C12 H121 MYR sing 270 n n C12 H122 MYR sing 271 n n C13 C14 MYR sing 272 n n C13 H131 MYR sing 273 n n C13 H132 MYR sing 274 n n C14 H141 MYR sing 275 n n C14 H142 MYR sing 276 n n C14 H143 MYR sing 277 n n # _atom_sites.entry_id 7C9Y _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 PLM A 1 301 301 PLM PLM . F 6 MYR D 1 101 1 MYR MYR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYR . . . F 6 212.972 157.061 294.901 1 0 ? C1 MYR 101 D 1 HETATM 2 O O1 MYR . . . F 6 212.699 158.056 294.2 1 0 ? O1 MYR 101 D 1 HETATM 3 O O2 MYR . . . F 6 213.81 157.171 295.821 1 0 ? O2 MYR 101 D 1 HETATM 4 C C2 MYR . . . F 6 212.291 155.742 294.64 1 0 ? C2 MYR 101 D 1 HETATM 5 C C3 MYR . . . F 6 212.736 155.146 293.313 1 0 ? C3 MYR 101 D 1 HETATM 6 C C4 MYR . . . F 6 213.481 153.832 293.499 1 0 ? C4 MYR 101 D 1 HETATM 7 C C5 MYR . . . F 6 212.536 152.677 293.818 1 0 ? C5 MYR 101 D 1 HETATM 8 C C6 MYR . . . F 6 213.294 151.484 294.389 1 0 ? C6 MYR 101 D 1 HETATM 9 C C7 MYR . . . F 6 212.343 150.378 294.835 1 0 ? C7 MYR 101 D 1 HETATM 10 C C8 MYR . . . F 6 212.955 149.416 295.852 1 0 ? C8 MYR 101 D 1 HETATM 11 C C9 MYR . . . F 6 213.946 148.425 295.247 1 0 ? C9 MYR 101 D 1 HETATM 12 C C10 MYR . . . F 6 215.34 149.01 295.032 1 0 ? C10 MYR 101 D 1 HETATM 13 C C11 MYR . . . F 6 216.432 148.048 295.473 1 0 ? C11 MYR 101 D 1 HETATM 14 C C12 MYR . . . F 6 216.572 147.973 296.987 1 0 ? C12 MYR 101 D 1 HETATM 15 C C13 MYR . . . F 6 217.877 147.286 297.358 1 0 ? C13 MYR 101 D 1 HETATM 16 C C14 MYR . . . F 6 217.927 146.927 298.837 1 0 ? C14 MYR 101 D 1 HETATM 17 H H21 MYR . . . F 6 212.51 155.052 295.452 1 0 ? H21 MYR 101 D 1 HETATM 18 H H22 MYR . . . F 6 211.216 155.896 294.605 1 0 ? H22 MYR 101 D 1 HETATM 19 H H31 MYR . . . F 6 211.858 154.971 292.695 1 0 ? H31 MYR 101 D 1 HETATM 20 H H32 MYR . . . F 6 213.379 155.854 292.795 1 0 ? H32 MYR 101 D 1 HETATM 21 H H41 MYR . . . F 6 214.021 153.605 292.581 1 0 ? H41 MYR 101 D 1 HETATM 22 H H42 MYR . . . F 6 214.212 153.942 294.298 1 0 ? H42 MYR 101 D 1 HETATM 23 H H51 MYR . . . F 6 212.031 152.373 292.903 1 0 ? H51 MYR 101 D 1 HETATM 24 H H52 MYR . . . F 6 211.776 153.001 294.527 1 0 ? H52 MYR 101 D 1 HETATM 25 H H61 MYR . . . F 6 213.895 151.815 295.23 1 0 ? H61 MYR 101 D 1 HETATM 26 H H62 MYR . . . F 6 213.974 151.092 293.633 1 0 ? H62 MYR 101 D 1 HETATM 27 H H71 MYR . . . F 6 211.451 150.827 295.272 1 0 ? H71 MYR 101 D 1 HETATM 28 H H72 MYR . . . F 6 212.028 149.814 293.961 1 0 ? H72 MYR 101 D 1 HETATM 29 H H81 MYR . . . F 6 212.15 148.851 296.315 1 0 ? H81 MYR 101 D 1 HETATM 30 H H82 MYR . . . F 6 213.437 149.98 296.648 1 0 ? H82 MYR 101 D 1 HETATM 31 H H91 MYR . . . F 6 213.563 148.074 294.292 1 0 ? H91 MYR 101 D 1 HETATM 32 H H92 MYR . . . F 6 214.012 147.558 295.9 1 0 ? H92 MYR 101 D 1 HETATM 33 H H101 MYR . . . F 6 215.448 149.945 295.576 1 0 ? H101 MYR 101 D 1 HETATM 34 H H102 MYR . . . F 6 215.477 149.227 293.973 1 0 ? H102 MYR 101 D 1 HETATM 35 H H111 MYR . . . F 6 216.211 147.058 295.082 1 0 ? H111 MYR 101 D 1 HETATM 36 H H112 MYR . . . F 6 217.379 148.369 295.047 1 0 ? H112 MYR 101 D 1 HETATM 37 H H121 MYR . . . F 6 215.74 147.417 297.411 1 0 ? H121 MYR 101 D 1 HETATM 38 H H122 MYR . . . F 6 216.55 148.976 297.407 1 0 ? H122 MYR 101 D 1 HETATM 39 H H131 MYR . . . F 6 218.706 147.95 297.124 1 0 ? H131 MYR 101 D 1 HETATM 40 H H132 MYR . . . F 6 217.989 146.382 296.76 1 0 ? H132 MYR 101 D 1 HETATM 41 H H141 MYR . . . F 6 217.075 147.374 299.349 1 0 ? H141 MYR 101 D 1 HETATM 42 H H142 MYR . . . F 6 218.854 147.303 299.27 1 0 ? H142 MYR 101 D 1 HETATM 43 H H143 MYR . . . F 6 217.89 145.845 298.948 1 0 ? H143 MYR 101 D 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #