data_7C9Z # _model_server_result.job_id UxfmyCRDAZN7MPvE324FxA _model_server_result.datetime_utc '2025-07-14 22:50:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7c9z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 7C9Z # _exptl.entry_id 7C9Z _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 256.424 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 240-meric 240 'complete icosahedral assembly' 1 ? tetrameric 4 'icosahedral asymmetric unit' 2 ? eicosameric 20 'icosahedral pentamer' 3 ? 24-meric 24 'icosahedral 23 hexamer' 4 ? tetrameric 4 'icosahedral asymmetric unit, std point frame' 5 ? 240-meric 240 'crystal asymmetric unit, crystal frame' 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 (1-60) A,B,C,D,E,F 2 1 A,B,C,D,E,F 3 (1-5) A,B,C,D,E,F 4 (1,2,6,10,23,24) A,B,C,D,E,F 5 P A,B,C,D,E,F 6 (X0)(1-60) # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.5 -0.809017 -0.309017 -0.309017 -0.5 0.809017 -0.809017 -0.309017 -0.5 133.00091 0 348.20091 X0 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.809017 0.309017 -0.5 0.309017 0.5 0.809017 0.5 -0.809017 0.309017 82.19908 -133.00091 215.19999 3 'point symmetry operation' ? ? 0.5 0.809017 -0.309017 0.809017 -0.309017 0.5 0.309017 -0.5 -0.809017 0 0 430.39999 4 'point symmetry operation' ? ? 0.5 0.809017 0.309017 0.809017 -0.309017 -0.5 -0.309017 0.5 -0.809017 -133.00091 215.19999 348.20091 5 'point symmetry operation' ? ? 0.809017 0.309017 0.5 0.309017 0.5 -0.809017 -0.5 0.809017 0.309017 -133.00091 215.2 82.19909 6 'point symmetry operation' ? ? 0.309017 0.5 0.809017 0.5 -0.809017 0.309017 0.809017 0.309017 -0.5 -133.00091 215.19999 82.19908 7 'point symmetry operation' ? ? 0.809017 -0.309017 0.5 0.309017 -0.5 -0.809017 0.5 0.809017 -0.309017 0 430.39999 0 8 'point symmetry operation' ? ? 0.809017 -0.309017 -0.5 -0.309017 0.5 -0.809017 0.5 0.809017 0.309017 215.2 348.20091 -133.00091 9 'point symmetry operation' ? ? 0.309017 0.5 -0.809017 -0.5 0.809017 0.309017 0.809017 0.309017 0.5 215.2 82.19909 -133.00091 10 'point symmetry operation' ? ? 0 1 0 0 0 1 1 0 0 0 0 0 11 'point symmetry operation' ? ? -0.809017 0.309017 -0.5 0.309017 -0.5 -0.809017 -0.5 -0.809017 0.309017 430.4 430.39999 430.4 12 'point symmetry operation' ? ? -0.809017 0.309017 0.5 -0.309017 0.5 -0.809017 -0.5 -0.809017 -0.309017 215.2 348.20091 563.40091 13 'point symmetry operation' ? ? -0.309017 -0.5 0.809017 -0.5 0.809017 0.309017 -0.809017 -0.309017 -0.5 215.2 82.19909 563.40091 14 'point symmetry operation' ? ? 0 -1 0 0 0 1 -1 0 0 430.39999 0 430.4 15 'point symmetry operation' ? ? -0.309017 -0.5 -0.809017 0.5 -0.809017 0.309017 -0.809017 -0.309017 0.5 563.40091 215.2 348.20091 16 'point symmetry operation' ? ? -0.5 -0.809017 -0.309017 -0.809017 0.309017 0.5 -0.309017 0.5 -0.809017 563.40091 215.2 348.20091 17 'point symmetry operation' ? ? -0.809017 -0.309017 -0.5 -0.309017 -0.5 0.809017 -0.5 0.809017 0.309017 563.40091 215.2 82.19909 18 'point symmetry operation' ? ? -1 0 0 0 -1 0 0 0 1 430.4 430.39999 0 19 'point symmetry operation' ? ? -0.809017 -0.309017 0.5 -0.309017 -0.5 -0.809017 0.5 -0.809017 0.309017 348.20091 563.40091 215.2 20 'point symmetry operation' ? ? -0.5 -0.809017 0.309017 -0.809017 0.309017 -0.5 0.309017 -0.5 -0.809017 430.4 430.4 430.39999 21 'point symmetry operation' ? ? -0.309017 0.5 -0.809017 0.5 0.809017 0.309017 0.809017 -0.309017 -0.5 348.20091 -133.00091 215.19999 22 'point symmetry operation' ? ? -0.5 0.809017 0.309017 0.809017 0.309017 0.5 0.309017 0.5 -0.809017 82.19909 -133.00091 215.2 23 'point symmetry operation' ? ? 0 0 1 1 0 0 0 1 0 0 0 0 24 'point symmetry operation' ? ? 0.5 -0.809017 0.309017 0.809017 0.309017 -0.5 0.309017 0.5 0.809017 215.2 82.19908 -133.00091 25 'point symmetry operation' ? ? 0.309017 -0.5 -0.809017 0.5 0.809017 -0.309017 0.809017 -0.309017 0.5 430.4 0 0 26 'point symmetry operation' ? ? -0.5 -0.809017 0.309017 0.809017 -0.309017 0.5 -0.309017 0.5 0.809017 430.4 0 0 27 'point symmetry operation' ? ? -0.5 -0.809017 -0.309017 0.809017 -0.309017 -0.5 0.309017 -0.5 0.809017 563.40091 215.2 82.19908 28 'point symmetry operation' ? ? -0.809017 -0.309017 -0.5 0.309017 0.5 -0.809017 0.5 -0.809017 -0.309017 563.40091 215.2 348.20091 29 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 430.4 0 430.39999 30 'point symmetry operation' ? ? -0.809017 -0.309017 0.5 0.309017 0.5 0.809017 -0.5 0.809017 -0.309017 348.20091 -133.00091 215.2 31 'point symmetry operation' ? ? 0.809017 0.309017 -0.5 -0.309017 -0.5 -0.809017 -0.5 0.809017 -0.309017 82.19909 563.40091 215.2 32 'point symmetry operation' ? ? 0.5 0.809017 -0.309017 -0.809017 0.309017 -0.5 -0.309017 0.5 0.809017 0 430.4 0 33 'point symmetry operation' ? ? 0.5 0.809017 0.309017 -0.809017 0.309017 0.5 0.309017 -0.5 0.809017 -133.00091 215.2 82.19908 34 'point symmetry operation' ? ? 0.809017 0.309017 0.5 -0.309017 -0.5 0.809017 0.5 -0.809017 -0.309017 -133.00091 215.2 348.20091 35 'point symmetry operation' ? ? 1 0 0 0 -1 0 0 0 -1 0 430.39999 430.4 36 'point symmetry operation' ? ? 0 0 1 -1 0 0 0 -1 0 0 430.4 430.4 37 'point symmetry operation' ? ? 0.5 -0.809017 0.309017 -0.809017 -0.309017 0.5 -0.309017 -0.5 -0.809017 215.2 348.20091 563.40091 38 'point symmetry operation' ? ? 0.309017 -0.5 -0.809017 -0.5 -0.809017 0.309017 -0.809017 0.309017 -0.5 430.39999 430.4 430.4 39 'point symmetry operation' ? ? -0.309017 0.5 -0.809017 -0.5 -0.809017 -0.309017 -0.809017 0.309017 0.5 348.20091 563.40091 215.2 40 'point symmetry operation' ? ? -0.5 0.809017 0.309017 -0.809017 -0.309017 -0.5 -0.309017 -0.5 0.809017 82.19909 563.40091 215.2 41 'point symmetry operation' ? ? -0.309017 0.5 0.809017 0.5 0.809017 -0.309017 -0.809017 0.309017 -0.5 0 0 430.4 42 'point symmetry operation' ? ? 0.309017 -0.5 0.809017 0.5 0.809017 0.309017 -0.809017 0.309017 0.5 82.19908 -133.00091 215.2 43 'point symmetry operation' ? ? 0.5 -0.809017 -0.309017 0.809017 0.309017 0.5 -0.309017 -0.5 0.809017 348.20091 -133.00091 215.2 44 'point symmetry operation' ? ? 0 0 -1 1 0 0 0 -1 0 430.4 0 430.39999 45 'point symmetry operation' ? ? -0.5 0.809017 -0.309017 0.809017 0.309017 -0.5 -0.309017 -0.5 -0.809017 215.2 82.19908 563.40091 46 'point symmetry operation' ? ? 0.809017 -0.309017 -0.5 0.309017 -0.5 0.809017 -0.5 -0.809017 -0.309017 215.2 82.19908 563.40091 47 'point symmetry operation' ? ? 0.309017 0.5 -0.809017 0.5 -0.809017 -0.309017 -0.809017 -0.309017 -0.5 215.2 348.20091 563.40091 48 'point symmetry operation' ? ? 0 1 0 0 0 -1 -1 0 0 0 430.39999 430.4 49 'point symmetry operation' ? ? 0.309017 0.5 0.809017 -0.5 0.809017 -0.309017 -0.809017 -0.309017 0.5 -133.00091 215.2 348.20091 50 'point symmetry operation' ? ? 0.809017 -0.309017 0.5 -0.309017 0.5 0.809017 -0.5 -0.809017 0.309017 0 0 430.4 51 'point symmetry operation' ? ? 0 -1 0 0 0 -1 1 0 0 430.4 430.4 0 52 'point symmetry operation' ? ? -0.309017 -0.5 -0.809017 -0.5 0.809017 -0.309017 0.809017 0.309017 -0.5 563.40091 215.2 82.19908 53 'point symmetry operation' ? ? -0.809017 0.309017 -0.5 -0.309017 0.5 0.809017 0.5 0.809017 -0.309017 430.4 0 0 54 'point symmetry operation' ? ? -0.809017 0.309017 0.5 0.309017 -0.5 0.809017 0.5 0.809017 0.309017 215.2 82.19908 -133.00091 55 'point symmetry operation' ? ? -0.309017 -0.5 0.809017 0.5 -0.809017 -0.309017 0.809017 0.309017 0.5 215.2 348.20091 -133.00091 56 'point symmetry operation' ? ? -0.5 0.809017 -0.309017 -0.809017 -0.309017 0.5 0.309017 0.5 0.809017 215.2 348.20091 -133.00091 57 'point symmetry operation' ? ? -0.309017 0.5 0.809017 -0.5 -0.809017 0.309017 0.809017 -0.309017 0.5 0 430.39999 0 58 'point symmetry operation' ? ? 0.309017 -0.5 0.809017 -0.5 -0.809017 -0.309017 0.809017 -0.309017 -0.5 82.19909 563.40091 215.2 59 'point symmetry operation' ? ? 0.5 -0.809017 -0.309017 -0.809017 -0.309017 -0.5 0.309017 0.5 -0.809017 348.20091 563.40091 215.2 60 'point symmetry operation' ? ? 0 0 -1 -1 0 0 0 1 0 430.4 430.4 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 301 n n C1 O2 PLM doub 302 n n C1 C2 PLM sing 303 n n O1 H PLM sing 304 n n C2 C3 PLM sing 305 n n C2 H21 PLM sing 306 n n C2 H22 PLM sing 307 n n C3 C4 PLM sing 308 n n C3 H31 PLM sing 309 n n C3 H32 PLM sing 310 n n C4 C5 PLM sing 311 n n C4 H41 PLM sing 312 n n C4 H42 PLM sing 313 n n C5 C6 PLM sing 314 n n C5 H51 PLM sing 315 n n C5 H52 PLM sing 316 n n C6 C7 PLM sing 317 n n C6 H61 PLM sing 318 n n C6 H62 PLM sing 319 n n C7 C8 PLM sing 320 n n C7 H71 PLM sing 321 n n C7 H72 PLM sing 322 n n C8 C9 PLM sing 323 n n C8 H81 PLM sing 324 n n C8 H82 PLM sing 325 n n C9 CA PLM sing 326 n n C9 H91 PLM sing 327 n n C9 H92 PLM sing 328 n n CA CB PLM sing 329 n n CA HA1 PLM sing 330 n n CA HA2 PLM sing 331 n n CB CC PLM sing 332 n n CB HB1 PLM sing 333 n n CB HB2 PLM sing 334 n n CC CD PLM sing 335 n n CC HC1 PLM sing 336 n n CC HC2 PLM sing 337 n n CD CE PLM sing 338 n n CD HD1 PLM sing 339 n n CD HD2 PLM sing 340 n n CE CF PLM sing 341 n n CE HE1 PLM sing 342 n n CE HE2 PLM sing 343 n n CF CG PLM sing 344 n n CF HF1 PLM sing 345 n n CF HF2 PLM sing 346 n n CG HG1 PLM sing 347 n n CG HG2 PLM sing 348 n n CG HG3 PLM sing 349 n n # _atom_sites.entry_id 7C9Z _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 PLM A 1 301 301 PLM PLM . F 6 MYR D 1 101 1 MYR MYR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . E 5 117.874 123.951 188.054 1 32.24 ? C1 PLM 301 A 1 HETATM 2 O O1 PLM . . . E 5 118.143 123.108 188.952 1 32.24 ? O1 PLM 301 A 1 HETATM 3 O O2 PLM . . . E 5 117.029 123.866 187.121 1 32.24 ? O2 PLM 301 A 1 HETATM 4 C C2 PLM . . . E 5 118.717 125.27 188.129 1 32.24 ? C2 PLM 301 A 1 HETATM 5 C C3 PLM . . . E 5 118.294 126.304 189.182 1 32.24 ? C3 PLM 301 A 1 HETATM 6 C C4 PLM . . . E 5 117.274 125.812 190.229 1 32.24 ? C4 PLM 301 A 1 HETATM 7 C C5 PLM . . . E 5 117.015 126.823 191.347 1 32.24 ? C5 PLM 301 A 1 HETATM 8 C C6 PLM . . . E 5 118.041 126.79 192.476 1 32.24 ? C6 PLM 301 A 1 HETATM 9 C C7 PLM . . . E 5 117.633 125.885 193.647 1 32.24 ? C7 PLM 301 A 1 HETATM 10 C C8 PLM . . . E 5 116.797 126.57 194.738 1 32.24 ? C8 PLM 301 A 1 HETATM 11 C C9 PLM . . . E 5 117.022 126.005 196.137 1 32.24 ? C9 PLM 301 A 1 HETATM 12 C CA PLM . . . E 5 115.875 126.263 197.106 1 32.24 ? CA PLM 301 A 1 HETATM 13 C CB PLM . . . E 5 116.333 126.521 198.54 1 32.24 ? CB PLM 301 A 1 HETATM 14 C CC PLM . . . E 5 115.248 126.285 199.58 1 32.24 ? CC PLM 301 A 1 HETATM 15 C CD PLM . . . E 5 115.357 127.181 200.814 1 32.24 ? CD PLM 301 A 1 HETATM 16 C CE PLM . . . E 5 114.379 126.794 201.926 1 32.24 ? CE PLM 301 A 1 HETATM 17 C CF PLM . . . E 5 114.287 127.803 203.059 1 32.24 ? CF PLM 301 A 1 HETATM 18 C CG PLM . . . E 5 113.09 127.557 203.981 1 32.24 ? CG PLM 301 A 1 HETATM 19 H H21 PLM . . . E 5 118.704 125.719 187.131 1 32.24 ? H21 PLM 301 A 1 HETATM 20 H H22 PLM . . . E 5 119.757 124.969 188.299 1 32.24 ? H22 PLM 301 A 1 HETATM 21 H H31 PLM . . . E 5 119.194 126.66 189.689 1 32.24 ? H31 PLM 301 A 1 HETATM 22 H H32 PLM . . . E 5 117.891 127.184 188.663 1 32.24 ? H32 PLM 301 A 1 HETATM 23 H H41 PLM . . . E 5 117.621 124.87 190.682 1 32.24 ? H41 PLM 301 A 1 HETATM 24 H H42 PLM . . . E 5 116.323 125.584 189.736 1 32.24 ? H42 PLM 301 A 1 HETATM 25 H H51 PLM . . . E 5 116.022 126.637 191.765 1 32.24 ? H51 PLM 301 A 1 HETATM 26 H H52 PLM . . . E 5 116.984 127.829 190.917 1 32.24 ? H52 PLM 301 A 1 HETATM 27 H H61 PLM . . . E 5 118.221 127.808 192.834 1 32.24 ? H61 PLM 301 A 1 HETATM 28 H H62 PLM . . . E 5 119 126.444 192.077 1 32.24 ? H62 PLM 301 A 1 HETATM 29 H H71 PLM . . . E 5 118.535 125.453 194.101 1 32.24 ? H71 PLM 301 A 1 HETATM 30 H H72 PLM . . . E 5 117.064 125.039 193.248 1 32.24 ? H72 PLM 301 A 1 HETATM 31 H H81 PLM . . . E 5 115.741 126.476 194.485 1 32.24 ? H81 PLM 301 A 1 HETATM 32 H H82 PLM . . . E 5 117.015 127.639 194.755 1 32.24 ? H82 PLM 301 A 1 HETATM 33 H H91 PLM . . . E 5 117.936 126.433 196.552 1 32.24 ? H91 PLM 301 A 1 HETATM 34 H H92 PLM . . . E 5 117.192 124.932 196.062 1 32.24 ? H92 PLM 301 A 1 HETATM 35 H HA1 PLM . . . E 5 115.197 125.407 197.095 1 32.24 ? HA1 PLM 301 A 1 HETATM 36 H HA2 PLM . . . E 5 115.297 127.113 196.755 1 32.24 ? HA2 PLM 301 A 1 HETATM 37 H HB1 PLM . . . E 5 116.696 127.546 198.626 1 32.24 ? HB1 PLM 301 A 1 HETATM 38 H HB2 PLM . . . E 5 117.185 125.881 198.764 1 32.24 ? HB2 PLM 301 A 1 HETATM 39 H HC1 PLM . . . E 5 115.284 125.241 199.9 1 32.24 ? HC1 PLM 301 A 1 HETATM 40 H HC2 PLM . . . E 5 114.268 126.43 199.114 1 32.24 ? HC2 PLM 301 A 1 HETATM 41 H HD1 PLM . . . E 5 115.181 128.22 200.524 1 32.24 ? HD1 PLM 301 A 1 HETATM 42 H HD2 PLM . . . E 5 116.378 127.141 201.198 1 32.24 ? HD2 PLM 301 A 1 HETATM 43 H HE1 PLM . . . E 5 114.675 125.836 202.34 1 32.24 ? HE1 PLM 301 A 1 HETATM 44 H HE2 PLM . . . E 5 113.381 126.641 201.496 1 32.24 ? HE2 PLM 301 A 1 HETATM 45 H HF1 PLM . . . E 5 114.228 128.803 202.638 1 32.24 ? HF1 PLM 301 A 1 HETATM 46 H HF2 PLM . . . E 5 115.207 127.773 203.64 1 32.24 ? HF2 PLM 301 A 1 HETATM 47 H HG1 PLM . . . E 5 113.133 128.174 204.868 1 32.24 ? HG1 PLM 301 A 1 HETATM 48 H HG2 PLM . . . E 5 113.046 126.519 204.305 1 32.24 ? HG2 PLM 301 A 1 HETATM 49 H HG3 PLM . . . E 5 112.154 127.775 203.474 1 32.24 ? HG3 PLM 301 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 49 #