data_7CB2 # _model_server_result.job_id zp90K2C6AJySjC6Pt-K0Dg _model_server_result.datetime_utc '2024-12-27 00:39:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cb2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":501}' # _entry.id 7CB2 # _exptl.entry_id 7CB2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CB2 _cell.length_a 95.53 _cell.length_b 136.04 _cell.length_c 164.54 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CB2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,N,O 1 1 C,D,J,K,L,M,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 J N N ? 2 L N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 257 n n PA O2A NAP sing 258 n n PA O5B NAP sing 259 n n PA O3 NAP sing 260 n n O2A HOA2 NAP sing 261 n n O5B C5B NAP sing 262 n n C5B C4B NAP sing 263 n n C5B H51A NAP sing 264 n n C5B H52A NAP sing 265 n n C4B O4B NAP sing 266 n n C4B C3B NAP sing 267 n n C4B H4B NAP sing 268 n n O4B C1B NAP sing 269 n n C3B O3B NAP sing 270 n n C3B C2B NAP sing 271 n n C3B H3B NAP sing 272 n n O3B HO3A NAP sing 273 n n C2B O2B NAP sing 274 n n C2B C1B NAP sing 275 n n C2B H2B NAP sing 276 n n O2B P2B NAP sing 277 n n C1B N9A NAP sing 278 n n C1B H1B NAP sing 279 n n N9A C8A NAP sing 280 n y N9A C4A NAP sing 281 n y C8A N7A NAP doub 282 n y C8A H8A NAP sing 283 n n N7A C5A NAP sing 284 n y C5A C6A NAP sing 285 n y C5A C4A NAP doub 286 n y C6A N6A NAP sing 287 n n C6A N1A NAP doub 288 n y N6A H61A NAP sing 289 n n N6A H62A NAP sing 290 n n N1A C2A NAP sing 291 n y C2A N3A NAP doub 292 n y C2A H2A NAP sing 293 n n N3A C4A NAP sing 294 n y O3 PN NAP sing 295 n n PN O1N NAP doub 296 n n PN O2N NAP sing 297 n n PN O5D NAP sing 298 n n O5D C5D NAP sing 299 n n C5D C4D NAP sing 300 n n C5D H51N NAP sing 301 n n C5D H52N NAP sing 302 n n C4D O4D NAP sing 303 n n C4D C3D NAP sing 304 n n C4D H4D NAP sing 305 n n O4D C1D NAP sing 306 n n C3D O3D NAP sing 307 n n C3D C2D NAP sing 308 n n C3D H3D NAP sing 309 n n O3D HO3N NAP sing 310 n n C2D O2D NAP sing 311 n n C2D C1D NAP sing 312 n n C2D H2D NAP sing 313 n n O2D HO2N NAP sing 314 n n C1D N1N NAP sing 315 n n C1D H1D NAP sing 316 n n N1N C2N NAP sing 317 n y N1N C6N NAP doub 318 n y C2N C3N NAP doub 319 n y C2N H2N NAP sing 320 n n C3N C7N NAP sing 321 n n C3N C4N NAP sing 322 n y C7N O7N NAP doub 323 n n C7N N7N NAP sing 324 n n N7N H71N NAP sing 325 n n N7N H72N NAP sing 326 n n C4N C5N NAP doub 327 n y C4N H4N NAP sing 328 n n C5N C6N NAP sing 329 n y C5N H5N NAP sing 330 n n C6N H6N NAP sing 331 n n P2B O1X NAP doub 332 n n P2B O2X NAP sing 333 n n P2B O3X NAP sing 334 n n O2X HOP2 NAP sing 335 n n O3X HOP3 NAP sing 336 n n # _atom_sites.entry_id 7CB2 _atom_sites.fract_transf_matrix[1][1] 0.010468 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007351 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006078 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAP A 1 501 2 NAP NAP . F 3 NO3 A 1 502 1 NO3 NO3 . G 3 NO3 A 1 503 3 NO3 NO3 . H 2 NAP B 1 501 3 NAP NAP . I 3 NO3 B 1 502 2 NO3 NO3 . J 2 NAP C 1 501 4 NAP NAP . K 4 CIT C 1 502 1 CIT CIT . L 2 NAP D 1 501 1 NAP NAP . M 4 CIT D 1 502 2 CIT CIT . N 5 HOH A 1 601 180 HOH HOH . N 5 HOH A 2 602 182 HOH HOH . N 5 HOH A 3 603 54 HOH HOH . N 5 HOH A 4 604 172 HOH HOH . N 5 HOH A 5 605 55 HOH HOH . N 5 HOH A 6 606 28 HOH HOH . N 5 HOH A 7 607 44 HOH HOH . N 5 HOH A 8 608 92 HOH HOH . N 5 HOH A 9 609 100 HOH HOH . N 5 HOH A 10 610 136 HOH HOH . N 5 HOH A 11 611 4 HOH HOH . N 5 HOH A 12 612 99 HOH HOH . N 5 HOH A 13 613 189 HOH HOH . N 5 HOH A 14 614 179 HOH HOH . N 5 HOH A 15 615 98 HOH HOH . N 5 HOH A 16 616 127 HOH HOH . N 5 HOH A 17 617 16 HOH HOH . N 5 HOH A 18 618 74 HOH HOH . N 5 HOH A 19 619 112 HOH HOH . N 5 HOH A 20 620 89 HOH HOH . N 5 HOH A 21 621 183 HOH HOH . N 5 HOH A 22 622 164 HOH HOH . N 5 HOH A 23 623 115 HOH HOH . N 5 HOH A 24 624 120 HOH HOH . N 5 HOH A 25 625 159 HOH HOH . N 5 HOH A 26 626 84 HOH HOH . N 5 HOH A 27 627 42 HOH HOH . N 5 HOH A 28 628 14 HOH HOH . N 5 HOH A 29 629 26 HOH HOH . N 5 HOH A 30 630 69 HOH HOH . N 5 HOH A 31 631 48 HOH HOH . N 5 HOH A 32 632 34 HOH HOH . N 5 HOH A 33 633 176 HOH HOH . N 5 HOH A 34 634 61 HOH HOH . N 5 HOH A 35 635 53 HOH HOH . N 5 HOH A 36 636 32 HOH HOH . N 5 HOH A 37 637 90 HOH HOH . N 5 HOH A 38 638 3 HOH HOH . N 5 HOH A 39 639 91 HOH HOH . N 5 HOH A 40 640 142 HOH HOH . N 5 HOH A 41 641 123 HOH HOH . N 5 HOH A 42 642 102 HOH HOH . N 5 HOH A 43 643 173 HOH HOH . N 5 HOH A 44 644 160 HOH HOH . N 5 HOH A 45 645 147 HOH HOH . N 5 HOH A 46 646 58 HOH HOH . N 5 HOH A 47 647 95 HOH HOH . N 5 HOH A 48 648 195 HOH HOH . N 5 HOH A 49 649 104 HOH HOH . N 5 HOH A 50 650 119 HOH HOH . N 5 HOH A 51 651 185 HOH HOH . N 5 HOH A 52 652 130 HOH HOH . N 5 HOH A 53 653 59 HOH HOH . N 5 HOH A 54 654 168 HOH HOH . N 5 HOH A 55 655 30 HOH HOH . N 5 HOH A 56 656 121 HOH HOH . N 5 HOH A 57 657 20 HOH HOH . N 5 HOH A 58 658 63 HOH HOH . N 5 HOH A 59 659 7 HOH HOH . N 5 HOH A 60 660 138 HOH HOH . N 5 HOH A 61 661 177 HOH HOH . O 5 HOH B 1 601 162 HOH HOH . O 5 HOH B 2 602 66 HOH HOH . O 5 HOH B 3 603 80 HOH HOH . O 5 HOH B 4 604 188 HOH HOH . O 5 HOH B 5 605 178 HOH HOH . O 5 HOH B 6 606 29 HOH HOH . O 5 HOH B 7 607 105 HOH HOH . O 5 HOH B 8 608 101 HOH HOH . O 5 HOH B 9 609 36 HOH HOH . O 5 HOH B 10 610 43 HOH HOH . O 5 HOH B 11 611 155 HOH HOH . O 5 HOH B 12 612 108 HOH HOH . O 5 HOH B 13 613 169 HOH HOH . O 5 HOH B 14 614 161 HOH HOH . O 5 HOH B 15 615 152 HOH HOH . O 5 HOH B 16 616 94 HOH HOH . O 5 HOH B 17 617 190 HOH HOH . O 5 HOH B 18 618 156 HOH HOH . O 5 HOH B 19 619 56 HOH HOH . O 5 HOH B 20 620 154 HOH HOH . O 5 HOH B 21 621 5 HOH HOH . O 5 HOH B 22 622 96 HOH HOH . O 5 HOH B 23 623 22 HOH HOH . O 5 HOH B 24 624 64 HOH HOH . O 5 HOH B 25 625 144 HOH HOH . O 5 HOH B 26 626 62 HOH HOH . O 5 HOH B 27 627 47 HOH HOH . O 5 HOH B 28 628 114 HOH HOH . O 5 HOH B 29 629 88 HOH HOH . O 5 HOH B 30 630 86 HOH HOH . O 5 HOH B 31 631 25 HOH HOH . O 5 HOH B 32 632 39 HOH HOH . O 5 HOH B 33 633 128 HOH HOH . O 5 HOH B 34 634 24 HOH HOH . O 5 HOH B 35 635 72 HOH HOH . O 5 HOH B 36 636 9 HOH HOH . O 5 HOH B 37 637 153 HOH HOH . O 5 HOH B 38 638 12 HOH HOH . O 5 HOH B 39 639 192 HOH HOH . O 5 HOH B 40 640 103 HOH HOH . O 5 HOH B 41 641 157 HOH HOH . O 5 HOH B 42 642 2 HOH HOH . O 5 HOH B 43 643 181 HOH HOH . O 5 HOH B 44 644 186 HOH HOH . O 5 HOH B 45 645 175 HOH HOH . O 5 HOH B 46 646 137 HOH HOH . O 5 HOH B 47 647 191 HOH HOH . O 5 HOH B 48 648 78 HOH HOH . O 5 HOH B 49 649 145 HOH HOH . O 5 HOH B 50 650 150 HOH HOH . O 5 HOH B 51 651 87 HOH HOH . O 5 HOH B 52 652 163 HOH HOH . O 5 HOH B 53 653 174 HOH HOH . O 5 HOH B 54 654 13 HOH HOH . O 5 HOH B 55 655 167 HOH HOH . O 5 HOH B 56 656 158 HOH HOH . O 5 HOH B 57 657 71 HOH HOH . O 5 HOH B 58 658 83 HOH HOH . O 5 HOH B 59 659 132 HOH HOH . O 5 HOH B 60 660 75 HOH HOH . O 5 HOH B 61 661 139 HOH HOH . O 5 HOH B 62 662 194 HOH HOH . O 5 HOH B 63 663 118 HOH HOH . O 5 HOH B 64 664 148 HOH HOH . P 5 HOH C 1 601 110 HOH HOH . P 5 HOH C 2 602 38 HOH HOH . P 5 HOH C 3 603 57 HOH HOH . P 5 HOH C 4 604 73 HOH HOH . P 5 HOH C 5 605 37 HOH HOH . P 5 HOH C 6 606 17 HOH HOH . P 5 HOH C 7 607 151 HOH HOH . P 5 HOH C 8 608 52 HOH HOH . P 5 HOH C 9 609 107 HOH HOH . P 5 HOH C 10 610 19 HOH HOH . P 5 HOH C 11 611 116 HOH HOH . P 5 HOH C 12 612 146 HOH HOH . P 5 HOH C 13 613 41 HOH HOH . P 5 HOH C 14 614 170 HOH HOH . P 5 HOH C 15 615 187 HOH HOH . P 5 HOH C 16 616 106 HOH HOH . P 5 HOH C 17 617 93 HOH HOH . P 5 HOH C 18 618 70 HOH HOH . P 5 HOH C 19 619 40 HOH HOH . P 5 HOH C 20 620 18 HOH HOH . P 5 HOH C 21 621 141 HOH HOH . P 5 HOH C 22 622 113 HOH HOH . P 5 HOH C 23 623 184 HOH HOH . P 5 HOH C 24 624 97 HOH HOH . P 5 HOH C 25 625 81 HOH HOH . P 5 HOH C 26 626 109 HOH HOH . P 5 HOH C 27 627 82 HOH HOH . P 5 HOH C 28 628 193 HOH HOH . P 5 HOH C 29 629 50 HOH HOH . P 5 HOH C 30 630 196 HOH HOH . P 5 HOH C 31 631 68 HOH HOH . P 5 HOH C 32 632 140 HOH HOH . P 5 HOH C 33 633 46 HOH HOH . P 5 HOH C 34 634 27 HOH HOH . Q 5 HOH D 1 601 117 HOH HOH . Q 5 HOH D 2 602 135 HOH HOH . Q 5 HOH D 3 603 85 HOH HOH . Q 5 HOH D 4 604 10 HOH HOH . Q 5 HOH D 5 605 49 HOH HOH . Q 5 HOH D 6 606 124 HOH HOH . Q 5 HOH D 7 607 67 HOH HOH . Q 5 HOH D 8 608 21 HOH HOH . Q 5 HOH D 9 609 15 HOH HOH . Q 5 HOH D 10 610 31 HOH HOH . Q 5 HOH D 11 611 79 HOH HOH . Q 5 HOH D 12 612 131 HOH HOH . Q 5 HOH D 13 613 122 HOH HOH . Q 5 HOH D 14 614 6 HOH HOH . Q 5 HOH D 15 615 51 HOH HOH . Q 5 HOH D 16 616 65 HOH HOH . Q 5 HOH D 17 617 133 HOH HOH . Q 5 HOH D 18 618 33 HOH HOH . Q 5 HOH D 19 619 35 HOH HOH . Q 5 HOH D 20 620 77 HOH HOH . Q 5 HOH D 21 621 111 HOH HOH . Q 5 HOH D 22 622 8 HOH HOH . Q 5 HOH D 23 623 76 HOH HOH . Q 5 HOH D 24 624 45 HOH HOH . Q 5 HOH D 25 625 166 HOH HOH . Q 5 HOH D 26 626 129 HOH HOH . Q 5 HOH D 27 627 23 HOH HOH . Q 5 HOH D 28 628 134 HOH HOH . Q 5 HOH D 29 629 126 HOH HOH . Q 5 HOH D 30 630 149 HOH HOH . Q 5 HOH D 31 631 125 HOH HOH . Q 5 HOH D 32 632 165 HOH HOH . Q 5 HOH D 33 633 143 HOH HOH . Q 5 HOH D 34 634 60 HOH HOH . Q 5 HOH D 35 635 1 HOH HOH . Q 5 HOH D 36 636 171 HOH HOH . Q 5 HOH D 37 637 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . J 2 -39.828 -9.336 -14.826 1 94.52 ? PA NAP 501 C 1 HETATM 2 O O1A NAP . . . J 2 -41.263 -9.014 -15.165 1 94.62 ? O1A NAP 501 C 1 HETATM 3 O O2A NAP . . . J 2 -39.505 -10.058 -13.54 1 90.81 ? O2A NAP 501 C 1 HETATM 4 O O5B NAP . . . J 2 -39.203 -10.184 -16.041 1 90.78 ? O5B NAP 501 C 1 HETATM 5 C C5B NAP . . . J 2 -38.613 -11.452 -15.781 1 87.84 ? C5B NAP 501 C 1 HETATM 6 C C4B NAP . . . J 2 -38.725 -12.361 -16.992 1 87.29 ? C4B NAP 501 C 1 HETATM 7 O O4B NAP . . . J 2 -38.296 -13.663 -16.598 1 86.27 ? O4B NAP 501 C 1 HETATM 8 C C3B NAP . . . J 2 -40.181 -12.469 -17.39 1 90.81 ? C3B NAP 501 C 1 HETATM 9 O O3B NAP . . . J 2 -40.285 -12.567 -18.813 1 90.28 ? O3B NAP 501 C 1 HETATM 10 C C2B NAP . . . J 2 -40.666 -13.748 -16.739 1 91.52 ? C2B NAP 501 C 1 HETATM 11 O O2B NAP . . . J 2 -41.569 -14.438 -17.599 1 94.68 ? O2B NAP 501 C 1 HETATM 12 C C1B NAP . . . J 2 -39.406 -14.55 -16.452 1 88.59 ? C1B NAP 501 C 1 HETATM 13 N N9A NAP . . . J 2 -39.442 -15.011 -15.044 1 88.74 ? N9A NAP 501 C 1 HETATM 14 C C8A NAP . . . J 2 -39.821 -14.264 -13.988 1 88.08 ? C8A NAP 501 C 1 HETATM 15 N N7A NAP . . . J 2 -39.75 -14.973 -12.833 1 86.24 ? N7A NAP 501 C 1 HETATM 16 C C5A NAP . . . J 2 -39.318 -16.209 -13.147 1 87.55 ? C5A NAP 501 C 1 HETATM 17 C C6A NAP . . . J 2 -39.022 -17.457 -12.404 1 86.93 ? C6A NAP 501 C 1 HETATM 18 N N6A NAP . . . J 2 -39.178 -17.523 -11.06 1 85.15 ? N6A NAP 501 C 1 HETATM 19 N N1A NAP . . . J 2 -38.591 -18.524 -13.115 1 86.25 ? N1A NAP 501 C 1 HETATM 20 C C2A NAP . . . J 2 -38.432 -18.469 -14.451 1 85.86 ? C2A NAP 501 C 1 HETATM 21 N N3A NAP . . . J 2 -38.681 -17.372 -15.19 1 86.9 ? N3A NAP 501 C 1 HETATM 22 C C4A NAP . . . J 2 -39.121 -16.231 -14.607 1 88.6 ? C4A NAP 501 C 1 HETATM 23 O O3 NAP . . . J 2 -38.954 -7.982 -14.895 1 102.48 ? O3 NAP 501 C 1 HETATM 24 P PN NAP . . . J 2 -39.628 -6.518 -14.881 1 109.16 ? PN NAP 501 C 1 HETATM 25 O O1N NAP . . . J 2 -40.166 -6.243 -13.497 1 105.53 ? O1N NAP 501 C 1 HETATM 26 O O2N NAP . . . J 2 -40.537 -6.408 -16.082 1 103.36 ? O2N NAP 501 C 1 HETATM 27 O O5D NAP . . . J 2 -38.361 -5.554 -15.13 1 102.18 ? O5D NAP 501 C 1 HETATM 28 P P2B NAP . . . J 2 -43.138 -14.503 -17.236 1 95.55 ? P2B NAP 501 C 1 HETATM 29 O O1X NAP . . . J 2 -43.377 -13.27 -16.394 1 91.18 ? O1X NAP 501 C 1 HETATM 30 O O2X NAP . . . J 2 -43.811 -14.468 -18.584 1 95.25 ? O2X NAP 501 C 1 HETATM 31 O O3X NAP . . . J 2 -43.296 -15.8 -16.481 1 95.41 ? O3X NAP 501 C 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #