data_7CBA # _model_server_result.job_id 4rTTB5r7H6p5pJbQOnrDGQ _model_server_result.datetime_utc '2024-11-26 14:42:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cba # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":907}' # _entry.id 7CBA # _exptl.entry_id 7CBA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.93 _cell.angle_gamma 90 _cell.entry_id 7CBA _cell.length_a 66.186 _cell.length_b 168.619 _cell.length_c 93.715 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CBA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,J,K,L,M 1 1 B,D,N,O,P,Q,R,S,T,U 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 K N N ? 5 S N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 861 NAG 2 n C NAG 2 C 2 NAG A 862 NAG 2 n C BMA 3 C 3 BMA A 863 BMA 2 n D NAG 1 D 1 NAG B 853 NAG 2 n D NAG 2 D 2 NAG B 854 NAG 2 n D BMA 3 D 3 BMA B 855 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 55 A CYS 78 1_555 A SG CYS 72 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 60 A CYS 83 1_555 A SG CYS 90 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf3 A SG CYS 70 A CYS 93 1_555 A SG CYS 83 A CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf4 A SG CYS 76 A CYS 99 1_555 A SG CYS 82 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? disulf ? disulf5 A SG CYS 101 A CYS 124 1_555 A SG CYS 147 A CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf6 A SG CYS 109 A CYS 132 1_555 A SG CYS 321 A CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf7 A SG CYS 337 A CYS 360 1_555 A SG CYS 434 A CYS 457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? disulf ? disulf8 A SG CYS 385 A CYS 408 1_555 A SG CYS 772 A CYS 795 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? disulf ? disulf9 A SG CYS 518 A CYS 541 1_555 A SG CYS 575 A CYS 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf10 A SG CYS 531 A CYS 554 1_555 A SG CYS 632 A CYS 655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf11 A SG CYS 533 A CYS 556 1_555 A SG CYS 617 A CYS 640 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf12 A SG CYS 740 A CYS 763 1_555 A SG CYS 750 A CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? disulf ? disulf13 B SG CYS 55 B CYS 78 1_555 B SG CYS 72 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf14 B SG CYS 60 B CYS 83 1_555 B SG CYS 90 B CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.862 ? disulf ? disulf15 B SG CYS 70 B CYS 93 1_555 B SG CYS 83 B CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf16 B SG CYS 76 B CYS 99 1_555 B SG CYS 82 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? disulf ? disulf17 B SG CYS 109 B CYS 132 1_555 B SG CYS 321 B CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? disulf ? disulf18 B SG CYS 385 B CYS 408 1_555 B SG CYS 772 B CYS 795 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf19 B SG CYS 518 B CYS 541 1_555 B SG CYS 575 B CYS 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf20 B SG CYS 531 B CYS 554 1_555 B SG CYS 632 B CYS 655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf21 B SG CYS 533 B CYS 556 1_555 B SG CYS 617 B CYS 640 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf22 B SG CYS 740 B CYS 763 1_555 B SG CYS 750 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A ND2 ASN 193 A ASN 216 1_555 E C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 236 A ASN 259 1_555 H C1 NAG . A NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 A ND2 ASN 247 A ASN 270 1_555 F C1 NAG . A NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 A ND2 ASN 489 A ASN 512 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale5 A ND2 ASN 742 A ASN 765 1_555 G C1 NAG . A NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale6 B ND2 ASN 193 B ASN 216 1_555 N C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 B ND2 ASN 236 B ASN 259 1_555 P C1 NAG . B NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale8 B ND2 ASN 247 B ASN 270 1_555 O C1 NAG . B NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale9 B ND2 ASN 489 B ASN 512 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale10 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale11 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale12 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? covale ? covale13 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? metalc ? metalc1 A OD1 ASP 124 A ASP 147 1_555 J ZN ZN . A ZN 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc2 A OD2 ASP 124 A ASP 147 1_555 J ZN ZN . A ZN 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc3 A OD1 ASP 282 A ASP 305 1_555 I ZN ZN . A ZN 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc4 A OD2 ASP 282 A ASP 305 1_555 I ZN ZN . A ZN 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc5 A NE2 HIS 286 A HIS 309 1_555 I ZN ZN . A ZN 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc6 A OD2 ASP 329 A ASP 352 1_555 J ZN ZN . A ZN 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc7 A NE2 HIS 330 A HIS 353 1_555 J ZN ZN . A ZN 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.886 ? metalc ? metalc8 A NE2 HIS 439 A HIS 462 1_555 I ZN ZN . A ZN 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc9 A OD1 ASP 705 A ASP 728 1_555 K CA CA . A CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? metalc ? metalc10 A OD1 ASN 707 A ASN 730 1_555 K CA CA . A CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? metalc ? metalc11 A OD1 ASP 709 A ASP 732 1_555 K CA CA . A CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc12 A OD2 ASP 709 A ASP 732 1_555 K CA CA . A CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.127 ? metalc ? metalc13 A O HIS 711 A HIS 734 1_555 K CA CA . A CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc14 A OD1 ASP 713 A ASP 736 1_555 K CA CA . A CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc15 I ZN ZN . A ZN 905 1_555 M O7 CIT . A CIT 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc16 I ZN ZN . A ZN 905 1_555 M O5 CIT . A CIT 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc17 B OD1 ASP 124 B ASP 147 1_555 R ZN ZN . B ZN 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc18 B OD2 ASP 124 B ASP 147 1_555 R ZN ZN . B ZN 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc19 B OG1 THR 162 B THR 185 1_555 R ZN ZN . B ZN 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.785 ? metalc ? metalc20 B OD1 ASP 282 B ASP 305 1_555 Q ZN ZN . B ZN 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc21 B OD2 ASP 282 B ASP 305 1_555 Q ZN ZN . B ZN 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc22 B NE2 HIS 286 B HIS 309 1_555 Q ZN ZN . B ZN 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc23 B OD2 ASP 329 B ASP 352 1_555 R ZN ZN . B ZN 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc24 B NE2 HIS 330 B HIS 353 1_555 R ZN ZN . B ZN 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc25 B NE2 HIS 439 B HIS 462 1_555 Q ZN ZN . B ZN 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc26 B OD1 ASP 705 B ASP 728 1_555 S CA CA . B CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc27 B OD1 ASN 707 B ASN 730 1_555 S CA CA . B CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc28 B OD1 ASP 709 B ASP 732 1_555 S CA CA . B CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc29 B O HIS 711 B HIS 734 1_555 S CA CA . B CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc30 B OD1 ASP 713 B ASP 736 1_555 S CA CA . B CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc31 Q ZN ZN . B ZN 904 1_555 U O2 CIT . B CIT 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc32 Q ZN ZN . B ZN 904 1_555 U O7 CIT . B CIT 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc33 Q ZN ZN . B ZN 904 1_555 U O6 CIT . B CIT 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7CBA _atom_sites.fract_transf_matrix[1][1] 0.015109 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004312 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005931 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011097 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 901 856 NAG NAG . F 3 NAG A 1 902 864 NAG NAG . G 3 NAG A 1 903 865 NAG NAG . H 3 NAG A 1 904 866 NAG NAG . I 4 ZN A 1 905 3 ZN ZN . J 4 ZN A 1 906 4 ZN ZN . K 5 CA A 1 907 2 CA CA . L 6 IRH A 1 908 2 IRH UNL . M 7 CIT A 1 909 1 CIT CIT . N 3 NAG B 1 901 852 NAG NAG . O 3 NAG B 1 902 857 NAG NAG . P 3 NAG B 1 903 858 NAG NAG . Q 4 ZN B 1 904 1 ZN ZN . R 4 ZN B 1 905 2 ZN ZN . S 5 CA B 1 906 1 CA CA . T 6 IRH B 1 907 1 IRH UNL . U 7 CIT B 1 908 2 CIT CIT . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 5 _atom_site.Cartn_x 42.437 _atom_site.Cartn_y 19.135 _atom_site.Cartn_z -6.054 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 64.14 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 907 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #