data_7CBZ # _model_server_result.job_id DnOJrifOt5NOh7lFc3wcEg _model_server_result.datetime_utc '2024-11-09 23:18:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cbz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":401}' # _entry.id 7CBZ # _exptl.entry_id 7CBZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CBZ _cell.length_a 104.805 _cell.length_b 156.63 _cell.length_c 181.469 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CBZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 L N N ? 6 R N N ? 6 U N N ? 6 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc2 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc3 A OD2 ASP 47 A ASP 47 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc4 A OD1 ASN 50 A ASN 50 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.027 ? metalc ? metalc5 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc6 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc7 G O3G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc8 B OE1 GLN 11 B GLN 11 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc9 L MG MG . B MG 502 1_555 P O1A GDP . B GDP 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc10 C OD1 ASP 39 C ASP 39 1_555 S CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.174 ? metalc ? metalc11 C OG1 THR 41 C THR 41 1_555 S CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc12 C O GLY 44 C GLY 44 1_555 S CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.166 ? metalc ? metalc13 C OD2 ASP 47 C ASP 47 1_555 S CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc14 C OD1 ASN 50 C ASN 50 1_555 S CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc15 C OE2 GLU 55 C GLU 55 1_555 S CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc16 Q O1G GTP . C GTP 501 1_555 R MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc17 Q O1B GTP . C GTP 501 1_555 R MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc18 D OE1 GLU 69 D GLU 71 1_555 U MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc19 D OE2 GLU 69 D GLU 71 1_555 U MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc20 U MG MG . D MG 502 1_555 W O1B GDP . D GDP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc21 F OE1 GLU 331 F GLU 331 1_555 X MG MG . F MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc22 F O VAL 332 F VAL 332 1_555 X MG MG . F MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc23 F OD1 ASN 333 F ASN 333 1_555 X MG MG . F MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7CBZ _atom_sites.fract_transf_matrix[1][1] 0.009542 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006384 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005511 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 501 GTP GTP . H 6 MG A 1 502 502 MG MG . I 7 CA A 1 503 503 CA CA . J 7 CA A 1 504 504 CA CA . K 8 FUO B 1 501 994 FUO FUO . L 6 MG B 1 502 995 MG MG . M 9 MES B 1 503 996 MES MES . N 7 CA B 1 504 997 CA CA . O 7 CA B 1 505 998 CA CA . P 10 GDP B 1 506 1201 GDP GDP . Q 5 GTP C 1 501 501 GTP GTP . R 6 MG C 1 502 502 MG MG . S 7 CA C 1 503 503 CA CA . T 8 FUO D 1 501 593 FUO FUO . U 6 MG D 1 502 594 MG MG . V 7 CA D 1 503 595 CA CA . W 10 GDP D 1 504 801 GDP GDP . X 6 MG F 1 401 401 MG MG . Y 11 HOH A 1 601 604 HOH HOH . Y 11 HOH A 2 602 607 HOH HOH . Y 11 HOH A 3 603 610 HOH HOH . Y 11 HOH A 4 604 606 HOH HOH . Y 11 HOH A 5 605 604 HOH HOH . Y 11 HOH A 6 606 608 HOH HOH . Y 11 HOH A 7 607 609 HOH HOH . Y 11 HOH A 8 608 613 HOH HOH . Y 11 HOH A 9 609 622 HOH HOH . Y 11 HOH A 10 610 603 HOH HOH . Y 11 HOH A 11 611 602 HOH HOH . Y 11 HOH A 12 612 615 HOH HOH . Y 11 HOH A 13 613 605 HOH HOH . Y 11 HOH A 14 614 611 HOH HOH . Y 11 HOH A 15 615 621 HOH HOH . Y 11 HOH A 16 616 612 HOH HOH . Y 11 HOH A 17 617 619 HOH HOH . Y 11 HOH A 18 618 617 HOH HOH . Y 11 HOH A 19 619 614 HOH HOH . Y 11 HOH A 20 620 616 HOH HOH . Y 11 HOH A 21 621 620 HOH HOH . Z 11 HOH B 1 601 1093 HOH HOH . Z 11 HOH B 2 602 1113 HOH HOH . Z 11 HOH B 3 603 1108 HOH HOH . Z 11 HOH B 4 604 1104 HOH HOH . Z 11 HOH B 5 605 1099 HOH HOH . Z 11 HOH B 6 606 1102 HOH HOH . Z 11 HOH B 7 607 1109 HOH HOH . Z 11 HOH B 8 608 1 HOH HOH . Z 11 HOH B 9 609 1097 HOH HOH . Z 11 HOH B 10 610 1106 HOH HOH . Z 11 HOH B 11 611 1110 HOH HOH . Z 11 HOH B 12 612 1105 HOH HOH . Z 11 HOH B 13 613 1094 HOH HOH . Z 11 HOH B 14 614 1095 HOH HOH . Z 11 HOH B 15 615 1107 HOH HOH . Z 11 HOH B 16 616 1103 HOH HOH . Z 11 HOH B 17 617 1112 HOH HOH . Z 11 HOH B 18 618 1098 HOH HOH . Z 11 HOH B 19 619 1121 HOH HOH . Z 11 HOH B 20 620 1114 HOH HOH . Z 11 HOH B 21 621 1117 HOH HOH . Z 11 HOH B 22 622 1100 HOH HOH . Z 11 HOH B 23 623 1115 HOH HOH . Z 11 HOH B 24 624 1119 HOH HOH . Z 11 HOH B 25 625 1101 HOH HOH . Z 11 HOH B 26 626 1116 HOH HOH . Z 11 HOH B 27 627 1120 HOH HOH . Z 11 HOH B 28 628 1118 HOH HOH . Z 11 HOH B 29 629 1111 HOH HOH . Z 11 HOH B 30 630 1123 HOH HOH . Z 11 HOH B 31 631 1125 HOH HOH . Z 11 HOH B 32 632 1124 HOH HOH . Z 11 HOH B 33 633 1122 HOH HOH . Z 11 HOH B 34 634 1127 HOH HOH . Z 11 HOH B 35 635 512 HOH HOH . AA 11 HOH C 1 601 605 HOH HOH . AA 11 HOH C 2 602 603 HOH HOH . AA 11 HOH C 3 603 612 HOH HOH . AA 11 HOH C 4 604 609 HOH HOH . AA 11 HOH C 5 605 607 HOH HOH . AA 11 HOH C 6 606 625 HOH HOH . AA 11 HOH C 7 607 610 HOH HOH . AA 11 HOH C 8 608 601 HOH HOH . AA 11 HOH C 9 609 620 HOH HOH . AA 11 HOH C 10 610 606 HOH HOH . AA 11 HOH C 11 611 616 HOH HOH . AA 11 HOH C 12 612 602 HOH HOH . AA 11 HOH C 13 613 615 HOH HOH . AA 11 HOH C 14 614 614 HOH HOH . AA 11 HOH C 15 615 613 HOH HOH . AA 11 HOH C 16 616 608 HOH HOH . AA 11 HOH C 17 617 619 HOH HOH . AA 11 HOH C 18 618 617 HOH HOH . AA 11 HOH C 19 619 621 HOH HOH . AA 11 HOH C 20 620 623 HOH HOH . AA 11 HOH C 21 621 618 HOH HOH . AA 11 HOH C 22 622 626 HOH HOH . AA 11 HOH C 23 623 624 HOH HOH . AA 11 HOH C 24 624 1126 HOH HOH . AA 11 HOH C 25 625 627 HOH HOH . AA 11 HOH C 26 626 629 HOH HOH . AA 11 HOH C 27 627 628 HOH HOH . BA 11 HOH D 1 601 696 HOH HOH . BA 11 HOH D 2 602 2 HOH HOH . BA 11 HOH D 3 603 694 HOH HOH . BA 11 HOH D 4 604 695 HOH HOH . BA 11 HOH D 5 605 697 HOH HOH . BA 11 HOH D 6 606 698 HOH HOH . BA 11 HOH D 7 607 699 HOH HOH . BA 11 HOH D 8 608 700 HOH HOH . BA 11 HOH D 9 609 701 HOH HOH . BA 11 HOH D 10 610 702 HOH HOH . BA 11 HOH D 11 611 703 HOH HOH . BA 11 HOH D 12 612 705 HOH HOH . BA 11 HOH D 13 613 706 HOH HOH . BA 11 HOH D 14 614 704 HOH HOH . CA 11 HOH E 1 201 204 HOH HOH . CA 11 HOH E 2 202 202 HOH HOH . CA 11 HOH E 3 203 203 HOH HOH . CA 11 HOH E 4 204 201 HOH HOH . CA 11 HOH E 5 205 618 HOH HOH . CA 11 HOH E 6 206 206 HOH HOH . CA 11 HOH E 7 207 205 HOH HOH . CA 11 HOH E 8 208 207 HOH HOH . CA 11 HOH E 9 209 208 HOH HOH . DA 11 HOH F 1 501 503 HOH HOH . DA 11 HOH F 2 502 502 HOH HOH . DA 11 HOH F 3 503 505 HOH HOH . DA 11 HOH F 4 504 508 HOH HOH . DA 11 HOH F 5 505 509 HOH HOH . DA 11 HOH F 6 506 510 HOH HOH . DA 11 HOH F 7 507 501 HOH HOH . DA 11 HOH F 8 508 507 HOH HOH . DA 11 HOH F 9 509 511 HOH HOH . DA 11 HOH F 10 510 504 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id X _atom_site.label_entity_id 6 _atom_site.Cartn_x 9.191 _atom_site.Cartn_y 53.795 _atom_site.Cartn_z 92.601 _atom_site.occupancy 0 _atom_site.B_iso_or_equiv 85.96 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 401 _atom_site.auth_asym_id F _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #