data_7CCA
#
_model_server_result.job_id            D3GPVF5-oFhvJWPciNiOGA 
_model_server_result.datetime_utc      '2024-10-19 06:40:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7cca 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":302}' 
#
_entry.id    7CCA 
#
_exptl.entry_id    7CCA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              454.439 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            METHOTREXATE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7CCA 
_cell.length_a            92.385 
_cell.length_b            92.385 
_cell.length_c            234.72 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7CCA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C20 H22 N8 O5' 
_chem_comp.formula_weight    454.439 
_chem_comp.id                MTX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              METHOTREXATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 MTX doub 237 n y 
N1 C8A MTX sing 238 n y 
C2 NA2 MTX sing 239 n n 
C2 N3 MTX sing 240 n y 
NA2 HN21 MTX sing 241 n n 
NA2 HN22 MTX sing 242 n n 
N3 C4 MTX doub 243 n y 
C4 NA4 MTX sing 244 n n 
C4 C4A MTX sing 245 n y 
NA4 HN41 MTX sing 246 n n 
NA4 HN42 MTX sing 247 n n 
C4A N5 MTX sing 248 n y 
C4A C8A MTX doub 249 n y 
N5 C6 MTX doub 250 n y 
C6 C7 MTX sing 251 n y 
C6 C9 MTX sing 252 n n 
C7 N8 MTX doub 253 n y 
C7 H7 MTX sing 254 n n 
N8 C8A MTX sing 255 n y 
C9 N10 MTX sing 256 n n 
C9 H91 MTX sing 257 n n 
C9 H92 MTX sing 258 n n 
N10 CM MTX sing 259 n n 
N10 C14 MTX sing 260 n n 
CM HM1 MTX sing 261 n n 
CM HM2 MTX sing 262 n n 
CM HM3 MTX sing 263 n n 
C11 C12 MTX doub 264 n y 
C11 C16 MTX sing 265 n y 
C11 C MTX sing 266 n n 
C12 C13 MTX sing 267 n y 
C12 H12 MTX sing 268 n n 
C13 C14 MTX doub 269 n y 
C13 H13 MTX sing 270 n n 
C14 C15 MTX sing 271 n y 
C15 C16 MTX doub 272 n y 
C15 H15 MTX sing 273 n n 
C16 H16 MTX sing 274 n n 
C O MTX doub 275 n n 
C N MTX sing 276 n n 
N CA MTX sing 277 n n 
N HN MTX sing 278 n n 
CA CT MTX sing 279 n n 
CA CB MTX sing 280 n n 
CA HA MTX sing 281 n n 
CT O1 MTX doub 282 n n 
CT O2 MTX sing 283 n n 
O2 HO2 MTX sing 284 n n 
CB CG MTX sing 285 n n 
CB HB1 MTX sing 286 n n 
CB HB2 MTX sing 287 n n 
CG CD MTX sing 288 n n 
CG HG1 MTX sing 289 n n 
CG HG2 MTX sing 290 n n 
CD OE1 MTX doub 291 n n 
CD OE2 MTX sing 292 n n 
OE2 HOE2 MTX sing 293 n n 
#
_atom_sites.entry_id                     7CCA 
_atom_sites.fract_transf_matrix[1][1]    0.010824 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010824 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00426 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 UMP A 1 301 1 UMP UMP . 
D 3 MTX A 1 302 1 MTX MTX . 
E 2 UMP B 1 301 2 UMP UMP . 
F 3 MTX B 1 302 2 MTX MTX . 
G 4 HOH A 1 401 10 HOH HOH . 
G 4 HOH A 2 402 1 HOH HOH . 
G 4 HOH A 3 403 24 HOH HOH . 
G 4 HOH A 4 404 26 HOH HOH . 
G 4 HOH A 5 405 17 HOH HOH . 
G 4 HOH A 6 406 20 HOH HOH . 
G 4 HOH A 7 407 2 HOH HOH . 
G 4 HOH A 8 408 7 HOH HOH . 
G 4 HOH A 9 409 16 HOH HOH . 
G 4 HOH A 10 410 19 HOH HOH . 
G 4 HOH A 11 411 14 HOH HOH . 
G 4 HOH A 12 412 28 HOH HOH . 
G 4 HOH A 13 413 31 HOH HOH . 
H 4 HOH B 1 401 4 HOH HOH . 
H 4 HOH B 2 402 18 HOH HOH . 
H 4 HOH B 3 403 21 HOH HOH . 
H 4 HOH B 4 404 22 HOH HOH . 
H 4 HOH B 5 405 11 HOH HOH . 
H 4 HOH B 6 406 29 HOH HOH . 
H 4 HOH B 7 407 15 HOH HOH . 
H 4 HOH B 8 408 9 HOH HOH . 
H 4 HOH B 9 409 5 HOH HOH . 
H 4 HOH B 10 410 6 HOH HOH . 
H 4 HOH B 11 411 8 HOH HOH . 
H 4 HOH B 12 412 25 HOH HOH . 
H 4 HOH B 13 413 23 HOH HOH . 
H 4 HOH B 14 414 12 HOH HOH . 
H 4 HOH B 15 415 27 HOH HOH . 
H 4 HOH B 16 416 13 HOH HOH . 
H 4 HOH B 17 417 3 HOH HOH . 
H 4 HOH B 18 418 30 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 MTX . . . F 3 22.283 -32.819 -30.124 1 87.62 ? N1 MTX 302 B 1 
HETATM 2 C C2 MTX . . . F 3 22.744 -34.003 -29.709 1 99.77 ? C2 MTX 302 B 1 
HETATM 3 N NA2 MTX . . . F 3 23.979 -34.057 -29.205 1 101.56 ? NA2 MTX 302 B 1 
HETATM 4 N N3 MTX . . . F 3 22.038 -35.143 -29.771 1 103.4 ? N3 MTX 302 B 1 
HETATM 5 C C4 MTX . . . F 3 20.797 -35.163 -30.26 1 103.22 ? C4 MTX 302 B 1 
HETATM 6 N NA4 MTX . . . F 3 20.066 -36.284 -30.331 1 106.87 ? NA4 MTX 302 B 1 
HETATM 7 C C4A MTX . . . F 3 20.225 -33.907 -30.733 1 98.79 ? C4A MTX 302 B 1 
HETATM 8 N N5 MTX . . . F 3 18.989 -33.853 -31.234 1 95.52 ? N5 MTX 302 B 1 
HETATM 9 C C6 MTX . . . F 3 18.56 -32.663 -31.648 1 93.66 ? C6 MTX 302 B 1 
HETATM 10 C C7 MTX . . . F 3 19.356 -31.536 -31.557 1 90.85 ? C7 MTX 302 B 1 
HETATM 11 N N8 MTX . . . F 3 20.586 -31.558 -31.048 1 79.89 ? N8 MTX 302 B 1 
HETATM 12 C C8A MTX . . . F 3 21.065 -32.715 -30.636 1 88.52 ? C8A MTX 302 B 1 
HETATM 13 C C9 MTX . . . F 3 17.188 -32.554 -32.231 1 93.77 ? C9 MTX 302 B 1 
HETATM 14 N N10 MTX . . . F 3 17.148 -31.327 -32.985 1 96.12 ? N10 MTX 302 B 1 
HETATM 15 C CM MTX . . . F 3 16.274 -30.286 -32.494 1 91.75 ? CM MTX 302 B 1 
HETATM 16 C C11 MTX . . . F 3 19.455 -30.738 -36.429 1 92.29 ? C11 MTX 302 B 1 
HETATM 17 C C12 MTX . . . F 3 18.73 -29.708 -35.882 1 86.11 ? C12 MTX 302 B 1 
HETATM 18 C C13 MTX . . . F 3 17.979 -29.922 -34.743 1 89.33 ? C13 MTX 302 B 1 
HETATM 19 C C14 MTX . . . F 3 17.932 -31.154 -34.133 1 92.85 ? C14 MTX 302 B 1 
HETATM 20 C C15 MTX . . . F 3 18.669 -32.194 -34.676 1 90.44 ? C15 MTX 302 B 1 
HETATM 21 C C16 MTX . . . F 3 19.423 -31.985 -35.824 1 86.66 ? C16 MTX 302 B 1 
HETATM 22 C C MTX . . . F 3 20.277 -30.507 -37.654 1 100.76 ? C MTX 302 B 1 
HETATM 23 O O MTX . . . F 3 21.385 -30.98 -37.682 1 108.62 ? O MTX 302 B 1 
HETATM 24 N N MTX . . . F 3 19.808 -29.814 -38.685 1 117.4 ? N MTX 302 B 1 
HETATM 25 C CA MTX . . . F 3 20.171 -30.086 -40.077 1 116.5 ? CA MTX 302 B 1 
HETATM 26 C CT MTX . . . F 3 19.537 -29.103 -41.013 1 119.38 ? CT MTX 302 B 1 
HETATM 27 O O1 MTX . . . F 3 19.066 -28.064 -40.515 1 112.63 ? O1 MTX 302 B 1 
HETATM 28 O O2 MTX . . . F 3 19.491 -29.352 -42.242 1 115.49 ? O2 MTX 302 B 1 
HETATM 29 C CB MTX . . . F 3 19.749 -31.476 -40.547 1 114.41 ? CB MTX 302 B 1 
HETATM 30 C CG MTX . . . F 3 18.252 -31.57 -40.813 1 107.54 ? CG MTX 302 B 1 
HETATM 31 C CD MTX . . . F 3 17.991 -32.364 -42.057 1 101.07 ? CD MTX 302 B 1 
HETATM 32 O OE1 MTX . . . F 3 18.886 -32.39 -42.894 1 111.55 ? OE1 MTX 302 B 1 
HETATM 33 O OE2 MTX . . . F 3 16.911 -32.95 -42.225 1 89.82 ? OE2 MTX 302 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           356 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           33 
#