data_7CCC
#
_model_server_result.job_id            mXJik_oQjUYSPMCiEz8qPw 
_model_server_result.datetime_utc      '2025-07-31 21:56:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ccc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":402}' 
#
_entry.id    7CCC 
#
_exptl.entry_id    7CCC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7CCC 
_cell.length_a            74.759 
_cell.length_b            168.662 
_cell.length_c            176.989 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7CCC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 G N N 
? 6 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 74 A GLU 72 1_555 A N HIC 75 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C HIC 75 A HIC 73 1_555 A N GLY 76 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale3 E C GLU 74 E GLU 72 1_555 E N HIC 75 E HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 E C HIC 75 E HIC 73 1_555 E N GLY 76 E GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
metalc ? metalc1 F CA CA . A CA 401 1_555 G O2B ADP . A ADP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc2 H CA CA . E CA 401 1_555 I O2B ADP . E ADP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     7CCC 
_atom_sites.fract_transf_matrix[1][1]    0.013376 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005929 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00565 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 5 CA A 1 401 376 CA CA . 
G 6 ADP A 1 402 377 ADP ADP . 
H 5 CA E 1 401 376 CA CA . 
I 6 ADP E 1 402 377 ADP ADP . 
J 7 HOH A 1 501 9 HOH HOH . 
J 7 HOH A 2 502 7 HOH HOH . 
J 7 HOH A 3 503 17 HOH HOH . 
J 7 HOH A 4 504 39 HOH HOH . 
J 7 HOH A 5 505 11 HOH HOH . 
J 7 HOH A 6 506 52 HOH HOH . 
J 7 HOH A 7 507 41 HOH HOH . 
J 7 HOH A 8 508 50 HOH HOH . 
J 7 HOH A 9 509 48 HOH HOH . 
J 7 HOH A 10 510 46 HOH HOH . 
J 7 HOH A 11 511 8 HOH HOH . 
J 7 HOH A 12 512 10 HOH HOH . 
J 7 HOH A 13 513 40 HOH HOH . 
J 7 HOH A 14 514 45 HOH HOH . 
J 7 HOH A 15 515 49 HOH HOH . 
J 7 HOH A 16 516 51 HOH HOH . 
J 7 HOH A 17 517 42 HOH HOH . 
J 7 HOH A 18 518 44 HOH HOH . 
J 7 HOH A 19 519 43 HOH HOH . 
J 7 HOH A 20 520 47 HOH HOH . 
K 7 HOH B 1 401 4 HOH HOH . 
K 7 HOH B 2 402 56 HOH HOH . 
K 7 HOH B 3 403 1 HOH HOH . 
K 7 HOH B 4 404 5 HOH HOH . 
K 7 HOH B 5 405 30 HOH HOH . 
K 7 HOH B 6 406 31 HOH HOH . 
L 7 HOH C 1 301 55 HOH HOH . 
L 7 HOH C 2 302 16 HOH HOH . 
L 7 HOH C 3 303 53 HOH HOH . 
L 7 HOH C 4 304 15 HOH HOH . 
M 7 HOH D 1 301 54 HOH HOH . 
N 7 HOH E 1 501 26 HOH HOH . 
N 7 HOH E 2 502 2 HOH HOH . 
N 7 HOH E 3 503 20 HOH HOH . 
N 7 HOH E 4 504 23 HOH HOH . 
N 7 HOH E 5 505 19 HOH HOH . 
N 7 HOH E 6 506 25 HOH HOH . 
N 7 HOH E 7 507 28 HOH HOH . 
N 7 HOH E 8 508 24 HOH HOH . 
N 7 HOH E 9 509 3 HOH HOH . 
N 7 HOH E 10 510 38 HOH HOH . 
N 7 HOH E 11 511 35 HOH HOH . 
N 7 HOH E 12 512 21 HOH HOH . 
N 7 HOH E 13 513 33 HOH HOH . 
N 7 HOH E 14 514 34 HOH HOH . 
N 7 HOH E 15 515 32 HOH HOH . 
N 7 HOH E 16 516 29 HOH HOH . 
N 7 HOH E 17 517 37 HOH HOH . 
N 7 HOH E 18 518 27 HOH HOH . 
N 7 HOH E 19 519 22 HOH HOH . 
N 7 HOH E 20 520 18 HOH HOH . 
N 7 HOH E 21 521 6 HOH HOH . 
N 7 HOH E 22 522 13 HOH HOH . 
N 7 HOH E 23 523 36 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . I 6 9.236 -19.418 -80.006 1 41.84 ? PB ADP 402 E 1 
HETATM 2 O O1B ADP . . . I 6 8.14 -19.387 -81.046 1 43.99 ? O1B ADP 402 E 1 
HETATM 3 O O2B ADP . . . I 6 9.191 -20.583 -79.056 1 47.54 ? O2B ADP 402 E 1 
HETATM 4 O O3B ADP . . . I 6 9.511 -18.092 -79.331 1 45.87 ? O3B ADP 402 E 1 
HETATM 5 P PA ADP . . . I 6 10.601 -21.035 -81.826 1 29.8 ? PA ADP 402 E 1 
HETATM 6 O O1A ADP . . . I 6 9.561 -20.85 -82.901 1 29.85 ? O1A ADP 402 E 1 
HETATM 7 O O2A ADP . . . I 6 10.597 -22.282 -80.974 1 35.06 ? O2A ADP 402 E 1 
HETATM 8 O O3A ADP . . . I 6 10.558 -19.743 -80.864 1 37.8 ? O3A ADP 402 E 1 
HETATM 9 O O5' ADP . . . I 6 12.047 -20.862 -82.496 1 23.3 ? O5' ADP 402 E 1 
HETATM 10 C C5' ADP . . . I 6 12.436 -19.563 -82.919 1 25.56 ? C5' ADP 402 E 1 
HETATM 11 C C4' ADP . . . I 6 13.953 -19.484 -82.941 1 33.93 ? C4' ADP 402 E 1 
HETATM 12 O O4' ADP . . . I 6 14.525 -20.713 -83.401 1 31.7 ? O4' ADP 402 E 1 
HETATM 13 C C3' ADP . . . I 6 14.438 -18.376 -83.865 1 28.87 ? C3' ADP 402 E 1 
HETATM 14 O O3' ADP . . . I 6 15.263 -17.481 -83.113 1 23.3 ? O3' ADP 402 E 1 
HETATM 15 C C2' ADP . . . I 6 15.288 -19.077 -84.899 1 24.98 ? C2' ADP 402 E 1 
HETATM 16 O O2' ADP . . . I 6 16.455 -18.313 -85.199 1 29.91 ? O2' ADP 402 E 1 
HETATM 17 C C1' ADP . . . I 6 15.653 -20.38 -84.209 1 28.91 ? C1' ADP 402 E 1 
HETATM 18 N N9 ADP . . . I 6 15.986 -21.434 -85.187 1 23.3 ? N9 ADP 402 E 1 
HETATM 19 C C8 ADP . . . I 6 15.175 -21.934 -86.132 1 23.3 ? C8 ADP 402 E 1 
HETATM 20 N N7 ADP . . . I 6 15.823 -22.879 -86.86 1 23.3 ? N7 ADP 402 E 1 
HETATM 21 C C5 ADP . . . I 6 17.073 -22.986 -86.38 1 23.3 ? C5 ADP 402 E 1 
HETATM 22 C C6 ADP . . . I 6 18.274 -23.793 -86.692 1 23.3 ? C6 ADP 402 E 1 
HETATM 23 N N6 ADP . . . I 6 18.26 -24.702 -87.691 1 33.32 ? N6 ADP 402 E 1 
HETATM 24 N N1 ADP . . . I 6 19.377 -23.592 -85.942 1 23.3 ? N1 ADP 402 E 1 
HETATM 25 C C2 ADP . . . I 6 19.393 -22.689 -84.945 1 23.3 ? C2 ADP 402 E 1 
HETATM 26 N N3 ADP . . . I 6 18.345 -21.921 -84.602 1 23.6 ? N3 ADP 402 E 1 
HETATM 27 C C4 ADP . . . I 6 17.176 -22.024 -85.276 1 24.01 ? C4 ADP 402 E 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           249 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#