data_7CCF # _model_server_result.job_id Rs3vqXb45CoXMGEERr5uTg _model_server_result.datetime_utc '2025-04-26 05:38:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ccf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7CCF # _exptl.entry_id 7CCF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CCF _cell.length_a 86.552 _cell.length_b 86.552 _cell.length_c 122.431 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CCF _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 153 n n CHA C4D HEM doub 154 n n CHA HHA HEM sing 155 n n CHB C4A HEM sing 156 n n CHB C1B HEM doub 157 n n CHB HHB HEM sing 158 n n CHC C4B HEM sing 159 n n CHC C1C HEM doub 160 n n CHC HHC HEM sing 161 n n CHD C4C HEM doub 162 n n CHD C1D HEM sing 163 n n CHD HHD HEM sing 164 n n C1A C2A HEM doub 165 n y C1A NA HEM sing 166 n y C2A C3A HEM sing 167 n y C2A CAA HEM sing 168 n n C3A C4A HEM doub 169 n y C3A CMA HEM sing 170 n n C4A NA HEM sing 171 n y CMA HMA HEM sing 172 n n CMA HMAA HEM sing 173 n n CMA HMAB HEM sing 174 n n CAA CBA HEM sing 175 n n CAA HAA HEM sing 176 n n CAA HAAA HEM sing 177 n n CBA CGA HEM sing 178 n n CBA HBA HEM sing 179 n n CBA HBAA HEM sing 180 n n CGA O1A HEM doub 181 n n CGA O2A HEM sing 182 n n C1B C2B HEM sing 183 n n C1B NB HEM sing 184 n n C2B C3B HEM doub 185 n n C2B CMB HEM sing 186 n n C3B C4B HEM sing 187 n n C3B CAB HEM sing 188 n n C4B NB HEM doub 189 n n CMB HMB HEM sing 190 n n CMB HMBA HEM sing 191 n n CMB HMBB HEM sing 192 n n CAB CBB HEM doub 193 n n CAB HAB HEM sing 194 n n CBB HBB HEM sing 195 n n CBB HBBA HEM sing 196 n n C1C C2C HEM sing 197 n y C1C NC HEM sing 198 n y C2C C3C HEM doub 199 n y C2C CMC HEM sing 200 n n C3C C4C HEM sing 201 n y C3C CAC HEM sing 202 n n C4C NC HEM sing 203 n y CMC HMC HEM sing 204 n n CMC HMCA HEM sing 205 n n CMC HMCB HEM sing 206 n n CAC CBC HEM doub 207 n n CAC HAC HEM sing 208 n n CBC HBC HEM sing 209 n n CBC HBCA HEM sing 210 n n C1D C2D HEM sing 211 n n C1D ND HEM doub 212 n n C2D C3D HEM doub 213 n n C2D CMD HEM sing 214 n n C3D C4D HEM sing 215 n n C3D CAD HEM sing 216 n n C4D ND HEM sing 217 n n CMD HMD HEM sing 218 n n CMD HMDA HEM sing 219 n n CMD HMDB HEM sing 220 n n CAD CBD HEM sing 221 n n CAD HAD HEM sing 222 n n CAD HADA HEM sing 223 n n CBD CGD HEM sing 224 n n CBD HBD HEM sing 225 n n CBD HBDA HEM sing 226 n n CGD O1D HEM doub 227 n n CGD O2D HEM sing 228 n n O2A H2A HEM sing 229 n n O2D H2D HEM sing 230 n n FE NA HEM sing 231 n n FE NB HEM sing 232 n n FE NC HEM sing 233 n n FE ND HEM sing 234 n n # _atom_sites.entry_id 7CCF _atom_sites.fract_transf_matrix[1][1] 0.011554 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008168 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 501 HEM HEM . C 3 FW6 A 1 502 601 FW6 MEB . D 3 FW6 A 1 503 701 FW6 MEB . E 4 HOH A 1 601 31 HOH HOH . E 4 HOH A 2 602 60 HOH HOH . E 4 HOH A 3 603 28 HOH HOH . E 4 HOH A 4 604 61 HOH HOH . E 4 HOH A 5 605 1 HOH HOH . E 4 HOH A 6 606 45 HOH HOH . E 4 HOH A 7 607 56 HOH HOH . E 4 HOH A 8 608 4 HOH HOH . E 4 HOH A 9 609 51 HOH HOH . E 4 HOH A 10 610 18 HOH HOH . E 4 HOH A 11 611 13 HOH HOH . E 4 HOH A 12 612 26 HOH HOH . E 4 HOH A 13 613 10 HOH HOH . E 4 HOH A 14 614 44 HOH HOH . E 4 HOH A 15 615 16 HOH HOH . E 4 HOH A 16 616 6 HOH HOH . E 4 HOH A 17 617 17 HOH HOH . E 4 HOH A 18 618 2 HOH HOH . E 4 HOH A 19 619 54 HOH HOH . E 4 HOH A 20 620 27 HOH HOH . E 4 HOH A 21 621 9 HOH HOH . E 4 HOH A 22 622 52 HOH HOH . E 4 HOH A 23 623 55 HOH HOH . E 4 HOH A 24 624 3 HOH HOH . E 4 HOH A 25 625 35 HOH HOH . E 4 HOH A 26 626 48 HOH HOH . E 4 HOH A 27 627 23 HOH HOH . E 4 HOH A 28 628 5 HOH HOH . E 4 HOH A 29 629 34 HOH HOH . E 4 HOH A 30 630 38 HOH HOH . E 4 HOH A 31 631 12 HOH HOH . E 4 HOH A 32 632 29 HOH HOH . E 4 HOH A 33 633 57 HOH HOH . E 4 HOH A 34 634 11 HOH HOH . E 4 HOH A 35 635 22 HOH HOH . E 4 HOH A 36 636 33 HOH HOH . E 4 HOH A 37 637 14 HOH HOH . E 4 HOH A 38 638 20 HOH HOH . E 4 HOH A 39 639 19 HOH HOH . E 4 HOH A 40 640 47 HOH HOH . E 4 HOH A 41 641 15 HOH HOH . E 4 HOH A 42 642 36 HOH HOH . E 4 HOH A 43 643 24 HOH HOH . E 4 HOH A 44 644 50 HOH HOH . E 4 HOH A 45 645 63 HOH HOH . E 4 HOH A 46 646 21 HOH HOH . E 4 HOH A 47 647 62 HOH HOH . E 4 HOH A 48 648 32 HOH HOH . E 4 HOH A 49 649 39 HOH HOH . E 4 HOH A 50 650 42 HOH HOH . E 4 HOH A 51 651 30 HOH HOH . E 4 HOH A 52 652 46 HOH HOH . E 4 HOH A 53 653 41 HOH HOH . E 4 HOH A 54 654 64 HOH HOH . E 4 HOH A 55 655 40 HOH HOH . E 4 HOH A 56 656 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -26.539 -3.46 -23.414 1 33.53 ? CHA HEM 501 A 1 HETATM 2 C CHB HEM . . . B 2 -27.817 -7.899 -24.909 1 35.58 ? CHB HEM 501 A 1 HETATM 3 C CHC HEM . . . B 2 -23.214 -8.834 -26.164 1 40.15 ? CHC HEM 501 A 1 HETATM 4 C CHD HEM . . . B 2 -21.877 -4.686 -23.995 1 41.84 ? CHD HEM 501 A 1 HETATM 5 C C1A HEM . . . B 2 -27.29 -4.583 -23.693 1 32.52 ? C1A HEM 501 A 1 HETATM 6 C C2A HEM . . . B 2 -28.703 -4.768 -23.431 1 28.6 ? C2A HEM 501 A 1 HETATM 7 C C3A HEM . . . B 2 -29.052 -5.988 -23.846 1 29.83 ? C3A HEM 501 A 1 HETATM 8 C C4A HEM . . . B 2 -27.872 -6.629 -24.383 1 35.42 ? C4A HEM 501 A 1 HETATM 9 C CMA HEM . . . B 2 -30.462 -6.614 -23.77 1 27.62 ? CMA HEM 501 A 1 HETATM 10 C CAA HEM . . . B 2 -29.65 -3.727 -22.799 1 26.8 ? CAA HEM 501 A 1 HETATM 11 C CBA HEM . . . B 2 -30.364 -3.025 -23.949 1 30.37 ? CBA HEM 501 A 1 HETATM 12 C CGA HEM . . . B 2 -31.195 -1.88 -23.441 1 37.04 ? CGA HEM 501 A 1 HETATM 13 O O1A HEM . . . B 2 -31.363 -1.758 -22.2 1 42.02 ? O1A HEM 501 A 1 HETATM 14 O O2A HEM . . . B 2 -31.688 -1.086 -24.285 1 34.9 ? O2A HEM 501 A 1 HETATM 15 C C1B HEM . . . B 2 -26.704 -8.511 -25.437 1 37.78 ? C1B HEM 501 A 1 HETATM 16 C C2B HEM . . . B 2 -26.7 -9.757 -26.166 1 37.77 ? C2B HEM 501 A 1 HETATM 17 C C3B HEM . . . B 2 -25.446 -10.039 -26.511 1 42.98 ? C3B HEM 501 A 1 HETATM 18 C C4B HEM . . . B 2 -24.585 -8.965 -26.025 1 42.9 ? C4B HEM 501 A 1 HETATM 19 C CMB HEM . . . B 2 -27.932 -10.632 -26.479 1 31.36 ? CMB HEM 501 A 1 HETATM 20 C CAB HEM . . . B 2 -25.079 -11.308 -27.31 1 43.3 ? CAB HEM 501 A 1 HETATM 21 C CBB HEM . . . B 2 -23.832 -11.765 -27.384 1 38.89 ? CBB HEM 501 A 1 HETATM 22 C C1C HEM . . . B 2 -22.451 -7.76 -25.737 1 42.2 ? C1C HEM 501 A 1 HETATM 23 C C2C HEM . . . B 2 -21.048 -7.522 -26.036 1 40.6 ? C2C HEM 501 A 1 HETATM 24 C C3C HEM . . . B 2 -20.68 -6.371 -25.434 1 43.81 ? C3C HEM 501 A 1 HETATM 25 C C4C HEM . . . B 2 -21.839 -5.852 -24.736 1 45.38 ? C4C HEM 501 A 1 HETATM 26 C CMC HEM . . . B 2 -20.185 -8.468 -26.906 1 33.41 ? CMC HEM 501 A 1 HETATM 27 C CAC HEM . . . B 2 -19.308 -5.639 -25.413 1 42.51 ? CAC HEM 501 A 1 HETATM 28 C CBC HEM . . . B 2 -18.185 -6.082 -25.992 1 44.98 ? CBC HEM 501 A 1 HETATM 29 C C1D HEM . . . B 2 -23.012 -3.991 -23.627 1 35.86 ? C1D HEM 501 A 1 HETATM 30 C C2D HEM . . . B 2 -23.061 -2.731 -22.903 1 33.09 ? C2D HEM 501 A 1 HETATM 31 C C3D HEM . . . B 2 -24.346 -2.392 -22.742 1 32.81 ? C3D HEM 501 A 1 HETATM 32 C C4D HEM . . . B 2 -25.16 -3.424 -23.36 1 34.98 ? C4D HEM 501 A 1 HETATM 33 C CMD HEM . . . B 2 -21.84 -1.922 -22.405 1 33.13 ? CMD HEM 501 A 1 HETATM 34 C CAD HEM . . . B 2 -24.877 -1.124 -22.029 1 29.38 ? CAD HEM 501 A 1 HETATM 35 C CBD HEM . . . B 2 -24.889 0.049 -23.005 1 30.83 ? CBD HEM 501 A 1 HETATM 36 C CGD HEM . . . B 2 -25.689 1.198 -22.443 1 31.25 ? CGD HEM 501 A 1 HETATM 37 O O1D HEM . . . B 2 -25.674 2.293 -23.061 1 29.96 ? O1D HEM 501 A 1 HETATM 38 O O2D HEM . . . B 2 -26.341 1.026 -21.38 1 30.41 ? O2D HEM 501 A 1 HETATM 39 N NA HEM . . . B 2 -26.815 -5.744 -24.274 1 37.86 ? NA HEM 501 A 1 HETATM 40 N NB HEM . . . B 2 -25.401 -8.055 -25.373 1 41.81 ? NB HEM 501 A 1 HETATM 41 N NC HEM . . . B 2 -22.896 -6.72 -24.941 1 43.95 ? NC HEM 501 A 1 HETATM 42 N ND HEM . . . B 2 -24.312 -4.38 -23.888 1 36.03 ? ND HEM 501 A 1 HETATM 43 FE FE HEM . . . B 2 -24.86 -6.173 -24.723 1 44.23 ? FE HEM 501 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #