data_7CCG # _model_server_result.job_id ibm-zLEnTR1qq8Cd1JE-wQ _model_server_result.datetime_utc '2024-10-20 00:32:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ccg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7CCG # _exptl.entry_id 7CCG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 149.211 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7CCG _cell.length_a 96.511 _cell.length_b 96.511 _cell.length_c 76.026 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CCG _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall 'R 3' _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H11 N O2 S' _chem_comp.formula_weight 149.211 _chem_comp.id MET _chem_comp.mon_nstd_flag y _chem_comp.name METHIONINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA MET sing 251 n n N H MET sing 252 n n N H2 MET sing 253 n n CA C MET sing 254 n n CA CB MET sing 255 n n CA HA MET sing 256 n n C O MET doub 257 n n C OXT MET sing 258 n n CB CG MET sing 259 n n CB HB2 MET sing 260 n n CB HB3 MET sing 261 n n CG SD MET sing 262 n n CG HG2 MET sing 263 n n CG HG3 MET sing 264 n n SD CE MET sing 265 n n CE HE1 MET sing 266 n n CE HE2 MET sing 267 n n CE HE3 MET sing 268 n n OXT HXT MET sing 269 n n # _atom_sites.entry_id 7CCG _atom_sites.fract_transf_matrix[1][1] 0.010362 _atom_sites.fract_transf_matrix[1][2] 0.005982 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011964 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013153 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MET A 1 301 301 MET MET . C 3 5CD A 1 302 302 5CD 5CD . D 4 HOH A 1 401 438 HOH HOH . D 4 HOH A 2 402 468 HOH HOH . D 4 HOH A 3 403 517 HOH HOH . D 4 HOH A 4 404 622 HOH HOH . D 4 HOH A 5 405 446 HOH HOH . D 4 HOH A 6 406 484 HOH HOH . D 4 HOH A 7 407 485 HOH HOH . D 4 HOH A 8 408 453 HOH HOH . D 4 HOH A 9 409 447 HOH HOH . D 4 HOH A 10 410 428 HOH HOH . D 4 HOH A 11 411 502 HOH HOH . D 4 HOH A 12 412 409 HOH HOH . D 4 HOH A 13 413 475 HOH HOH . D 4 HOH A 14 414 435 HOH HOH . D 4 HOH A 15 415 471 HOH HOH . D 4 HOH A 16 416 408 HOH HOH . D 4 HOH A 17 417 416 HOH HOH . D 4 HOH A 18 418 403 HOH HOH . D 4 HOH A 19 419 412 HOH HOH . D 4 HOH A 20 420 423 HOH HOH . D 4 HOH A 21 421 492 HOH HOH . D 4 HOH A 22 422 417 HOH HOH . D 4 HOH A 23 423 414 HOH HOH . D 4 HOH A 24 424 549 HOH HOH . D 4 HOH A 25 425 410 HOH HOH . D 4 HOH A 26 426 418 HOH HOH . D 4 HOH A 27 427 573 HOH HOH . D 4 HOH A 28 428 413 HOH HOH . D 4 HOH A 29 429 424 HOH HOH . D 4 HOH A 30 430 621 HOH HOH . D 4 HOH A 31 431 576 HOH HOH . D 4 HOH A 32 432 427 HOH HOH . D 4 HOH A 33 433 489 HOH HOH . D 4 HOH A 34 434 407 HOH HOH . D 4 HOH A 35 435 515 HOH HOH . D 4 HOH A 36 436 406 HOH HOH . D 4 HOH A 37 437 555 HOH HOH . D 4 HOH A 38 438 401 HOH HOH . D 4 HOH A 39 439 488 HOH HOH . D 4 HOH A 40 440 529 HOH HOH . D 4 HOH A 41 441 434 HOH HOH . D 4 HOH A 42 442 535 HOH HOH . D 4 HOH A 43 443 458 HOH HOH . D 4 HOH A 44 444 415 HOH HOH . D 4 HOH A 45 445 433 HOH HOH . D 4 HOH A 46 446 493 HOH HOH . D 4 HOH A 47 447 437 HOH HOH . D 4 HOH A 48 448 465 HOH HOH . D 4 HOH A 49 449 440 HOH HOH . D 4 HOH A 50 450 589 HOH HOH . D 4 HOH A 51 451 457 HOH HOH . D 4 HOH A 52 452 455 HOH HOH . D 4 HOH A 53 453 405 HOH HOH . D 4 HOH A 54 454 464 HOH HOH . D 4 HOH A 55 455 513 HOH HOH . D 4 HOH A 56 456 452 HOH HOH . D 4 HOH A 57 457 479 HOH HOH . D 4 HOH A 58 458 503 HOH HOH . D 4 HOH A 59 459 425 HOH HOH . D 4 HOH A 60 460 499 HOH HOH . D 4 HOH A 61 461 429 HOH HOH . D 4 HOH A 62 462 577 HOH HOH . D 4 HOH A 63 463 426 HOH HOH . D 4 HOH A 64 464 454 HOH HOH . D 4 HOH A 65 465 450 HOH HOH . D 4 HOH A 66 466 509 HOH HOH . D 4 HOH A 67 467 478 HOH HOH . D 4 HOH A 68 468 497 HOH HOH . D 4 HOH A 69 469 536 HOH HOH . D 4 HOH A 70 470 419 HOH HOH . D 4 HOH A 71 471 470 HOH HOH . D 4 HOH A 72 472 486 HOH HOH . D 4 HOH A 73 473 463 HOH HOH . D 4 HOH A 74 474 610 HOH HOH . D 4 HOH A 75 475 533 HOH HOH . D 4 HOH A 76 476 564 HOH HOH . D 4 HOH A 77 477 504 HOH HOH . D 4 HOH A 78 478 480 HOH HOH . D 4 HOH A 79 479 568 HOH HOH . D 4 HOH A 80 480 542 HOH HOH . D 4 HOH A 81 481 557 HOH HOH . D 4 HOH A 82 482 602 HOH HOH . D 4 HOH A 83 483 461 HOH HOH . D 4 HOH A 84 484 560 HOH HOH . D 4 HOH A 85 485 579 HOH HOH . D 4 HOH A 86 486 523 HOH HOH . D 4 HOH A 87 487 594 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N MET . . . B 2 -17.588 -7.379 35.099 1 47.96 ? N MET 301 A 1 HETATM 2 C CA MET . . . B 2 -18.013 -6.64 36.257 1 48.21 ? CA MET 301 A 1 HETATM 3 C C MET . . . B 2 -19.121 -7.401 37.075 1 49.64 ? C MET 301 A 1 HETATM 4 O O MET . . . B 2 -19.968 -8.008 36.441 1 44.2 ? O MET 301 A 1 HETATM 5 C CB MET . . . B 2 -18.468 -5.253 35.744 1 46.92 ? CB MET 301 A 1 HETATM 6 C CG MET . . . B 2 -18.28 -4.094 36.658 1 47.63 ? CG MET 301 A 1 HETATM 7 S SD MET . . . B 2 -16.661 -4.058 37.448 1 97.93 ? SD MET 301 A 1 HETATM 8 C CE MET . . . B 2 -17.145 -4.958 38.918 1 48.65 ? CE MET 301 A 1 HETATM 9 O OXT MET . . . B 2 -19.121 -7.47 38.373 1 44.87 ? OXT MET 301 A 1 HETATM 10 H HA MET . . . B 2 -17.292 -6.516 36.893 1 58.03 ? HA MET 301 A 1 HETATM 11 H HB2 MET . . . B 2 -17.971 -5.056 34.934 1 56.48 ? HB2 MET 301 A 1 HETATM 12 H HB3 MET . . . B 2 -19.416 -5.304 35.546 1 56.48 ? HB3 MET 301 A 1 HETATM 13 H HG2 MET . . . B 2 -18.38 -3.274 36.15 1 57.33 ? HG2 MET 301 A 1 HETATM 14 H HG3 MET . . . B 2 -18.95 -4.135 37.358 1 57.33 ? HG3 MET 301 A 1 HETATM 15 H HE1 MET . . . B 2 -16.375 -5.049 39.5 1 58.56 ? HE1 MET 301 A 1 HETATM 16 H HE2 MET . . . B 2 -17.847 -4.467 39.372 1 58.56 ? HE2 MET 301 A 1 HETATM 17 H HE3 MET . . . B 2 -17.469 -5.835 38.659 1 58.56 ? HE3 MET 301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #