data_7CCY
#
_model_server_result.job_id            S99_bDNcnTScKpaWukrVlg 
_model_server_result.datetime_utc      '2024-12-02 05:07:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ccy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    7CCY 
#
_exptl.entry_id    7CCY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              352.126 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-[5-(aminomethyl)-4-(carboxymethyl)-2-iodo-1H-pyrrol-3-yl]propanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7CCY 
_cell.length_a            74.011 
_cell.length_b            81.237 
_cell.length_c            109.097 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7CCY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F 1 1 
B,D,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 261 A CYS 261 1_555 C CHA DPM . A DPM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
covale ? covale2 B SG CYS 261 C CYS 261 1_555 E CHA DPM . C DPM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? 
#
_chem_comp.formula           'C10 H13 I N2 O4' 
_chem_comp.formula_weight    352.126 
_chem_comp.id                FWL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-[5-(aminomethyl)-4-(carboxymethyl)-2-iodo-1H-pyrrol-3-yl]propanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     2-iodoporphobilinogen 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
I4A C4A FWL sing 138 n n 
NA C4A FWL sing 139 n y 
NA C1A FWL sing 140 n y 
N1 CHA FWL sing 141 n n 
C4A C3A FWL doub 142 n y 
CHA C1A FWL sing 143 n n 
C1A C2A FWL doub 144 n y 
C3A C2A FWL sing 145 n y 
C3A C7A FWL sing 146 n n 
C2A C5A FWL sing 147 n n 
C7A C8A FWL sing 148 n n 
O1A C6A FWL doub 149 n n 
C8A C9A FWL sing 150 n n 
C5A C6A FWL sing 151 n n 
O3A C9A FWL doub 152 n n 
C9A O4A FWL sing 153 n n 
C6A O2A FWL sing 154 n n 
CHA H1 FWL sing 155 n n 
CHA H2 FWL sing 156 n n 
NA H3 FWL sing 157 n n 
C5A H4 FWL sing 158 n n 
C5A H5 FWL sing 159 n n 
O2A H6 FWL sing 160 n n 
C7A H7 FWL sing 161 n n 
C7A H8 FWL sing 162 n n 
C8A H9 FWL sing 163 n n 
C8A H10 FWL sing 164 n n 
O4A H11 FWL sing 165 n n 
N1 H12 FWL sing 166 n n 
N1 H13 FWL sing 167 n n 
#
_atom_sites.entry_id                     7CCY 
_atom_sites.fract_transf_matrix[1][1]    0.013512 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01231 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009166 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DPM A 1 401 365 DPM DPM . 
D 3 FWL C 1 401 1 FWL PBG . 
E 2 DPM C 1 402 365 DPM DPM . 
F 4 HOH A 1 501 22 HOH HOH . 
F 4 HOH A 2 502 11 HOH HOH . 
F 4 HOH A 3 503 20 HOH HOH . 
F 4 HOH A 4 504 19 HOH HOH . 
F 4 HOH A 5 505 36 HOH HOH . 
F 4 HOH A 6 506 23 HOH HOH . 
F 4 HOH A 7 507 5 HOH HOH . 
F 4 HOH A 8 508 53 HOH HOH . 
F 4 HOH A 9 509 28 HOH HOH . 
F 4 HOH A 10 510 54 HOH HOH . 
F 4 HOH A 11 511 8 HOH HOH . 
F 4 HOH A 12 512 59 HOH HOH . 
F 4 HOH A 13 513 63 HOH HOH . 
F 4 HOH A 14 514 50 HOH HOH . 
F 4 HOH A 15 515 58 HOH HOH . 
F 4 HOH A 16 516 39 HOH HOH . 
F 4 HOH A 17 517 1 HOH HOH . 
F 4 HOH A 18 518 32 HOH HOH . 
F 4 HOH A 19 519 10 HOH HOH . 
F 4 HOH A 20 520 52 HOH HOH . 
F 4 HOH A 21 521 9 HOH HOH . 
F 4 HOH A 22 522 55 HOH HOH . 
F 4 HOH A 23 523 6 HOH HOH . 
F 4 HOH A 24 524 12 HOH HOH . 
F 4 HOH A 25 525 2 HOH HOH . 
F 4 HOH A 26 526 43 HOH HOH . 
F 4 HOH A 27 527 57 HOH HOH . 
F 4 HOH A 28 528 21 HOH HOH . 
F 4 HOH A 29 529 24 HOH HOH . 
F 4 HOH A 30 530 61 HOH HOH . 
F 4 HOH A 31 531 33 HOH HOH . 
F 4 HOH A 32 532 48 HOH HOH . 
F 4 HOH A 33 533 64 HOH HOH . 
F 4 HOH A 34 534 62 HOH HOH . 
F 4 HOH A 35 535 17 HOH HOH . 
F 4 HOH A 36 536 56 HOH HOH . 
F 4 HOH A 37 537 34 HOH HOH . 
F 4 HOH A 38 538 46 HOH HOH . 
F 4 HOH A 39 539 45 HOH HOH . 
G 4 HOH C 1 501 60 HOH HOH . 
G 4 HOH C 2 502 13 HOH HOH . 
G 4 HOH C 3 503 7 HOH HOH . 
G 4 HOH C 4 504 18 HOH HOH . 
G 4 HOH C 5 505 49 HOH HOH . 
G 4 HOH C 6 506 47 HOH HOH . 
G 4 HOH C 7 507 16 HOH HOH . 
G 4 HOH C 8 508 29 HOH HOH . 
G 4 HOH C 9 509 14 HOH HOH . 
G 4 HOH C 10 510 41 HOH HOH . 
G 4 HOH C 11 511 35 HOH HOH . 
G 4 HOH C 12 512 38 HOH HOH . 
G 4 HOH C 13 513 31 HOH HOH . 
G 4 HOH C 14 514 3 HOH HOH . 
G 4 HOH C 15 515 26 HOH HOH . 
G 4 HOH C 16 516 15 HOH HOH . 
G 4 HOH C 17 517 37 HOH HOH . 
G 4 HOH C 18 518 40 HOH HOH . 
G 4 HOH C 19 519 4 HOH HOH . 
G 4 HOH C 20 520 30 HOH HOH . 
G 4 HOH C 21 521 27 HOH HOH . 
G 4 HOH C 22 522 25 HOH HOH . 
G 4 HOH C 23 523 44 HOH HOH . 
G 4 HOH C 24 524 42 HOH HOH . 
G 4 HOH C 25 525 51 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA FWL . . . D 3 -40.155 -12.253 -0.45 0.76 35.06 ? CHA FWL 401 C 1 
HETATM 2 C C1A FWL . . . D 3 -38.881 -11.462 -0.331 0.76 37.49 ? C1A FWL 401 C 1 
HETATM 3 C C2A FWL . . . D 3 -38.099 -11.283 0.932 0.76 39.98 ? C2A FWL 401 C 1 
HETATM 4 C C3A FWL . . . D 3 -36.93 -10.443 0.578 0.76 37.57 ? C3A FWL 401 C 1 
HETATM 5 C C4A FWL . . . D 3 -37.162 -10.234 -0.875 0.76 43.34 ? C4A FWL 401 C 1 
HETATM 6 N NA FWL . . . D 3 -38.271 -10.822 -1.345 0.76 37.68 ? NA FWL 401 C 1 
HETATM 7 C C5A FWL . . . D 3 -38.452 -11.841 2.291 0.76 41.09 ? C5A FWL 401 C 1 
HETATM 8 C C6A FWL . . . D 3 -37.834 -13.198 2.486 0.76 43.82 ? C6A FWL 401 C 1 
HETATM 9 O O1A FWL . . . D 3 -37.34 -13.772 1.489 0.76 43.96 ? O1A FWL 401 C 1 
HETATM 10 O O2A FWL . . . D 3 -37.853 -13.691 3.641 0.76 43.26 ? O2A FWL 401 C 1 
HETATM 11 C C7A FWL . . . D 3 -35.814 -9.968 1.47 0.76 37.94 ? C7A FWL 401 C 1 
HETATM 12 C C8A FWL . . . D 3 -35.872 -8.464 1.649 0.76 40.26 ? C8A FWL 401 C 1 
HETATM 13 C C9A FWL . . . D 3 -34.689 -8.005 2.471 0.76 43.55 ? C9A FWL 401 C 1 
HETATM 14 O O3A FWL . . . D 3 -33.624 -8.662 2.462 0.76 43.8 ? O3A FWL 401 C 1 
HETATM 15 O O4A FWL . . . D 3 -34.827 -6.961 3.122 0.76 39.13 ? O4A FWL 401 C 1 
HETATM 16 N N1 FWL . . . D 3 -39.83 -13.567 -0.948 0.76 37.77 ? N1 FWL 401 C 1 
HETATM 17 I I4A FWL . . . D 3 -35.864 -9.072 -2.158 0.76 49.48 ? I4A FWL 401 C 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           17 
#