data_7CCY # _model_server_result.job_id OKvIucOisMDjrjhBGvPIIg _model_server_result.datetime_utc '2024-12-02 05:14:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ccy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 7CCY # _exptl.entry_id 7CCY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 420.413 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[5-{[3-(2-carboxyethyl)-4-(carboxymethyl)-5-methyl-1H-pyrrol-2-yl]methyl}-4-(carboxymethyl)-1H-pyrrol-3-yl]propanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CCY _cell.length_a 74.011 _cell.length_b 81.237 _cell.length_c 109.097 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CCY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 261 A CYS 261 1_555 C CHA DPM . A DPM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale2 B SG CYS 261 C CYS 261 1_555 E CHA DPM . C DPM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? # _chem_comp.formula 'C20 H24 N2 O8' _chem_comp.formula_weight 420.413 _chem_comp.id DPM _chem_comp.mon_nstd_flag . _chem_comp.name '3-[5-{[3-(2-carboxyethyl)-4-(carboxymethyl)-5-methyl-1H-pyrrol-2-yl]methyl}-4-(carboxymethyl)-1H-pyrrol-3-yl]propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DIPYRROMETHANE COFACTOR' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1A C2A DPM doub 83 n y C1A CHA DPM sing 84 n n C1A NA DPM sing 85 n y C2A C3A DPM sing 86 n y C2A C5A DPM sing 87 n n C3A C4A DPM doub 88 n y C3A C7A DPM sing 89 n n C4A NA DPM sing 90 n y C4A CHB DPM sing 91 n n C5A C6A DPM sing 92 n n C6A O1A DPM doub 93 n n C6A O2A DPM sing 94 n n C7A C8A DPM sing 95 n n C8A C9A DPM sing 96 n n C9A O3A DPM doub 97 n n C9A O4A DPM sing 98 n n C1B C2B DPM doub 99 n y C1B CHB DPM sing 100 n n C1B NB DPM sing 101 n y C2B C3B DPM sing 102 n y C2B C5B DPM sing 103 n n C3B C4B DPM doub 104 n y C3B C7B DPM sing 105 n n C4B NB DPM sing 106 n y C5B C6B DPM sing 107 n n C6B O1B DPM doub 108 n n C6B O2B DPM sing 109 n n C7B C8B DPM sing 110 n n C8B C9B DPM sing 111 n n C9B O3B DPM doub 112 n n C9B O4B DPM sing 113 n n C5A H5A1 DPM sing 114 n n C5A H5A2 DPM sing 115 n n C7A H7A1 DPM sing 116 n n C7A H7A2 DPM sing 117 n n C8A H8A1 DPM sing 118 n n C8A H8A2 DPM sing 119 n n CHA HCA1 DPM sing 120 n n CHA HCA2 DPM sing 121 n n CHA HCA3 DPM sing 122 n n NA H10 DPM sing 123 n n O2A HOA2 DPM sing 124 n n O4A HOA4 DPM sing 125 n n C4B H4B1 DPM sing 126 n n C5B H5B1 DPM sing 127 n n C5B H5B2 DPM sing 128 n n C7B H7B1 DPM sing 129 n n C7B H7B2 DPM sing 130 n n C8B H8B1 DPM sing 131 n n C8B H8B2 DPM sing 132 n n CHB HCB1 DPM sing 133 n n CHB HCB2 DPM sing 134 n n NB H22 DPM sing 135 n n O2B HOB2 DPM sing 136 n n O4B HOB4 DPM sing 137 n n # _atom_sites.entry_id 7CCY _atom_sites.fract_transf_matrix[1][1] 0.013512 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01231 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009166 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DPM A 1 401 365 DPM DPM . D 3 FWL C 1 401 1 FWL PBG . E 2 DPM C 1 402 365 DPM DPM . F 4 HOH A 1 501 22 HOH HOH . F 4 HOH A 2 502 11 HOH HOH . F 4 HOH A 3 503 20 HOH HOH . F 4 HOH A 4 504 19 HOH HOH . F 4 HOH A 5 505 36 HOH HOH . F 4 HOH A 6 506 23 HOH HOH . F 4 HOH A 7 507 5 HOH HOH . F 4 HOH A 8 508 53 HOH HOH . F 4 HOH A 9 509 28 HOH HOH . F 4 HOH A 10 510 54 HOH HOH . F 4 HOH A 11 511 8 HOH HOH . F 4 HOH A 12 512 59 HOH HOH . F 4 HOH A 13 513 63 HOH HOH . F 4 HOH A 14 514 50 HOH HOH . F 4 HOH A 15 515 58 HOH HOH . F 4 HOH A 16 516 39 HOH HOH . F 4 HOH A 17 517 1 HOH HOH . F 4 HOH A 18 518 32 HOH HOH . F 4 HOH A 19 519 10 HOH HOH . F 4 HOH A 20 520 52 HOH HOH . F 4 HOH A 21 521 9 HOH HOH . F 4 HOH A 22 522 55 HOH HOH . F 4 HOH A 23 523 6 HOH HOH . F 4 HOH A 24 524 12 HOH HOH . F 4 HOH A 25 525 2 HOH HOH . F 4 HOH A 26 526 43 HOH HOH . F 4 HOH A 27 527 57 HOH HOH . F 4 HOH A 28 528 21 HOH HOH . F 4 HOH A 29 529 24 HOH HOH . F 4 HOH A 30 530 61 HOH HOH . F 4 HOH A 31 531 33 HOH HOH . F 4 HOH A 32 532 48 HOH HOH . F 4 HOH A 33 533 64 HOH HOH . F 4 HOH A 34 534 62 HOH HOH . F 4 HOH A 35 535 17 HOH HOH . F 4 HOH A 36 536 56 HOH HOH . F 4 HOH A 37 537 34 HOH HOH . F 4 HOH A 38 538 46 HOH HOH . F 4 HOH A 39 539 45 HOH HOH . G 4 HOH C 1 501 60 HOH HOH . G 4 HOH C 2 502 13 HOH HOH . G 4 HOH C 3 503 7 HOH HOH . G 4 HOH C 4 504 18 HOH HOH . G 4 HOH C 5 505 49 HOH HOH . G 4 HOH C 6 506 47 HOH HOH . G 4 HOH C 7 507 16 HOH HOH . G 4 HOH C 8 508 29 HOH HOH . G 4 HOH C 9 509 14 HOH HOH . G 4 HOH C 10 510 41 HOH HOH . G 4 HOH C 11 511 35 HOH HOH . G 4 HOH C 12 512 38 HOH HOH . G 4 HOH C 13 513 31 HOH HOH . G 4 HOH C 14 514 3 HOH HOH . G 4 HOH C 15 515 26 HOH HOH . G 4 HOH C 16 516 15 HOH HOH . G 4 HOH C 17 517 37 HOH HOH . G 4 HOH C 18 518 40 HOH HOH . G 4 HOH C 19 519 4 HOH HOH . G 4 HOH C 20 520 30 HOH HOH . G 4 HOH C 21 521 27 HOH HOH . G 4 HOH C 22 522 25 HOH HOH . G 4 HOH C 23 523 44 HOH HOH . G 4 HOH C 24 524 42 HOH HOH . G 4 HOH C 25 525 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1A DPM . . . E 2 -40.18 -4.483 -2.738 1 34.98 ? C1A DPM 402 C 1 HETATM 2 C C2A DPM . . . E 2 -40.421 -3.713 -1.639 1 29.91 ? C2A DPM 402 C 1 HETATM 3 C C3A DPM . . . E 2 -40.196 -4.484 -0.542 1 37.38 ? C3A DPM 402 C 1 HETATM 4 C C4A DPM . . . E 2 -39.767 -5.731 -0.95 1 34.56 ? C4A DPM 402 C 1 HETATM 5 C C5A DPM . . . E 2 -40.914 -2.265 -1.666 1 26.18 ? C5A DPM 402 C 1 HETATM 6 C C6A DPM . . . E 2 -42.337 -2.05 -1.113 1 32.4 ? C6A DPM 402 C 1 HETATM 7 C C7A DPM . . . E 2 -40.37 -4.004 0.898 1 30.94 ? C7A DPM 402 C 1 HETATM 8 C C8A DPM . . . E 2 -39.023 -3.668 1.511 1 37.93 ? C8A DPM 402 C 1 HETATM 9 C C9A DPM . . . E 2 -39.317 -3.161 2.916 1 42.46 ? C9A DPM 402 C 1 HETATM 10 C CHA DPM . . . E 2 -40.308 -4.001 -4.196 1 33.57 ? CHA DPM 402 C 1 HETATM 11 N NA DPM . . . E 2 -39.758 -5.699 -2.303 1 33.17 ? NA DPM 402 C 1 HETATM 12 O O1A DPM . . . E 2 -42.884 -0.902 -1.182 1 28.95 ? O1A DPM 402 C 1 HETATM 13 O O2A DPM . . . E 2 -42.961 -2.991 -0.531 1 33.74 ? O2A DPM 402 C 1 HETATM 14 O O3A DPM . . . E 2 -38.366 -2.871 3.687 1 46.58 ? O3A DPM 402 C 1 HETATM 15 O O4A DPM . . . E 2 -40.51 -2.965 3.274 1 37.69 ? O4A DPM 402 C 1 HETATM 16 C C1B DPM . . . E 2 -40.4 -8.032 -0.234 1 32.2 ? C1B DPM 402 C 1 HETATM 17 C C2B DPM . . . E 2 -41.232 -8.618 0.698 1 34.99 ? C2B DPM 402 C 1 HETATM 18 C C3B DPM . . . E 2 -41.979 -9.537 0.048 1 37.13 ? C3B DPM 402 C 1 HETATM 19 C C4B DPM . . . E 2 -41.639 -9.523 -1.268 1 32.73 ? C4B DPM 402 C 1 HETATM 20 C C5B DPM . . . E 2 -41.321 -8.373 2.205 1 27.04 ? C5B DPM 402 C 1 HETATM 21 C C6B DPM . . . E 2 -42.599 -7.621 2.566 1 34.87 ? C6B DPM 402 C 1 HETATM 22 C C7B DPM . . . E 2 -43.038 -10.445 0.667 1 36.15 ? C7B DPM 402 C 1 HETATM 23 C C8B DPM . . . E 2 -44.42 -10 0.179 1 30.67 ? C8B DPM 402 C 1 HETATM 24 C C9B DPM . . . E 2 -44.757 -10.48 -1.241 1 33.92 ? C9B DPM 402 C 1 HETATM 25 C CHB DPM . . . E 2 -39.369 -6.923 -0.061 1 33.51 ? CHB DPM 402 C 1 HETATM 26 N NB DPM . . . E 2 -40.673 -8.592 -1.424 1 34.4 ? NB DPM 402 C 1 HETATM 27 O O1B DPM . . . E 2 -42.929 -6.607 1.869 1 33.43 ? O1B DPM 402 C 1 HETATM 28 O O2B DPM . . . E 2 -43.328 -8.011 3.544 1 33.53 ? O2B DPM 402 C 1 HETATM 29 O O3B DPM . . . E 2 -45.615 -9.848 -1.914 1 36.04 ? O3B DPM 402 C 1 HETATM 30 O O4B DPM . . . E 2 -44.193 -11.489 -1.762 1 31.57 ? O4B DPM 402 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #