data_7CD0
#
_model_server_result.job_id            jVb8Fy6Dkny9uF0jgvBryQ 
_model_server_result.datetime_utc      '2024-11-05 21:03:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7cd0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":402}' 
#
_entry.id    7CD0 
#
_exptl.entry_id    7CD0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              352.126 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-[5-(aminomethyl)-4-(carboxymethyl)-2-iodo-1H-pyrrol-3-yl]propanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7CD0 
_cell.length_a            81.416 
_cell.length_b            81.366 
_cell.length_c            108.85 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7CD0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F 1 1 
B,D,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 261 A CYS 261 1_555 C C 7J8 . A 7J8 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
covale ? covale2 B SG CYS 261 B CYS 261 1_555 D C 7J8 . B 7J8 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
#
_chem_comp.formula           'C10 H13 I N2 O4' 
_chem_comp.formula_weight    352.126 
_chem_comp.id                FWL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-[5-(aminomethyl)-4-(carboxymethyl)-2-iodo-1H-pyrrol-3-yl]propanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     2-iodoporphobilinogen 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
I4A C4A FWL sing 192 n n 
NA C4A FWL sing 193 n y 
NA C1A FWL sing 194 n y 
N1 CHA FWL sing 195 n n 
C4A C3A FWL doub 196 n y 
CHA C1A FWL sing 197 n n 
C1A C2A FWL doub 198 n y 
C3A C2A FWL sing 199 n y 
C3A C7A FWL sing 200 n n 
C2A C5A FWL sing 201 n n 
C7A C8A FWL sing 202 n n 
O1A C6A FWL doub 203 n n 
C8A C9A FWL sing 204 n n 
C5A C6A FWL sing 205 n n 
O3A C9A FWL doub 206 n n 
C9A O4A FWL sing 207 n n 
C6A O2A FWL sing 208 n n 
CHA H1 FWL sing 209 n n 
CHA H2 FWL sing 210 n n 
NA H3 FWL sing 211 n n 
C5A H4 FWL sing 212 n n 
C5A H5 FWL sing 213 n n 
O2A H6 FWL sing 214 n n 
C7A H7 FWL sing 215 n n 
C7A H8 FWL sing 216 n n 
C8A H9 FWL sing 217 n n 
C8A H10 FWL sing 218 n n 
O4A H11 FWL sing 219 n n 
N1 H12 FWL sing 220 n n 
N1 H13 FWL sing 221 n n 
#
_atom_sites.entry_id                     7CD0 
_atom_sites.fract_transf_matrix[1][1]    0.012283 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01229 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009187 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 7J8 A 1 401 401 7J8 7J8 . 
D 2 7J8 B 1 401 401 7J8 7J8 . 
E 3 FWL B 1 402 402 FWL PBG . 
F 4 HOH A 1 501 45 HOH HOH . 
F 4 HOH A 2 502 77 HOH HOH . 
F 4 HOH A 3 503 29 HOH HOH . 
F 4 HOH A 4 504 33 HOH HOH . 
F 4 HOH A 5 505 2 HOH HOH . 
F 4 HOH A 6 506 78 HOH HOH . 
F 4 HOH A 7 507 13 HOH HOH . 
F 4 HOH A 8 508 9 HOH HOH . 
F 4 HOH A 9 509 54 HOH HOH . 
F 4 HOH A 10 510 17 HOH HOH . 
F 4 HOH A 11 511 6 HOH HOH . 
F 4 HOH A 12 512 56 HOH HOH . 
F 4 HOH A 13 513 1 HOH HOH . 
F 4 HOH A 14 514 59 HOH HOH . 
F 4 HOH A 15 515 55 HOH HOH . 
F 4 HOH A 16 516 58 HOH HOH . 
F 4 HOH A 17 517 16 HOH HOH . 
F 4 HOH A 18 518 35 HOH HOH . 
F 4 HOH A 19 519 24 HOH HOH . 
F 4 HOH A 20 520 7 HOH HOH . 
F 4 HOH A 21 521 32 HOH HOH . 
F 4 HOH A 22 522 18 HOH HOH . 
F 4 HOH A 23 523 62 HOH HOH . 
F 4 HOH A 24 524 22 HOH HOH . 
F 4 HOH A 25 525 42 HOH HOH . 
F 4 HOH A 26 526 53 HOH HOH . 
F 4 HOH A 27 527 12 HOH HOH . 
F 4 HOH A 28 528 23 HOH HOH . 
F 4 HOH A 29 529 11 HOH HOH . 
F 4 HOH A 30 530 26 HOH HOH . 
F 4 HOH A 31 531 66 HOH HOH . 
F 4 HOH A 32 532 43 HOH HOH . 
F 4 HOH A 33 533 5 HOH HOH . 
F 4 HOH A 34 534 63 HOH HOH . 
F 4 HOH A 35 535 37 HOH HOH . 
F 4 HOH A 36 536 61 HOH HOH . 
F 4 HOH A 37 537 38 HOH HOH . 
F 4 HOH A 38 538 34 HOH HOH . 
F 4 HOH A 39 539 31 HOH HOH . 
F 4 HOH A 40 540 27 HOH HOH . 
F 4 HOH A 41 541 44 HOH HOH . 
F 4 HOH A 42 542 60 HOH HOH . 
F 4 HOH A 43 543 48 HOH HOH . 
F 4 HOH A 44 544 52 HOH HOH . 
F 4 HOH A 45 545 67 HOH HOH . 
F 4 HOH A 46 546 49 HOH HOH . 
F 4 HOH A 47 547 51 HOH HOH . 
F 4 HOH A 48 548 57 HOH HOH . 
F 4 HOH A 49 549 75 HOH HOH . 
F 4 HOH A 50 550 79 HOH HOH . 
F 4 HOH A 51 551 20 HOH HOH . 
F 4 HOH A 52 552 73 HOH HOH . 
F 4 HOH A 53 553 71 HOH HOH . 
F 4 HOH A 54 554 39 HOH HOH . 
G 4 HOH B 1 501 19 HOH HOH . 
G 4 HOH B 2 502 14 HOH HOH . 
G 4 HOH B 3 503 4 HOH HOH . 
G 4 HOH B 4 504 10 HOH HOH . 
G 4 HOH B 5 505 68 HOH HOH . 
G 4 HOH B 6 506 28 HOH HOH . 
G 4 HOH B 7 507 41 HOH HOH . 
G 4 HOH B 8 508 47 HOH HOH . 
G 4 HOH B 9 509 36 HOH HOH . 
G 4 HOH B 10 510 74 HOH HOH . 
G 4 HOH B 11 511 65 HOH HOH . 
G 4 HOH B 12 512 64 HOH HOH . 
G 4 HOH B 13 513 76 HOH HOH . 
G 4 HOH B 14 514 40 HOH HOH . 
G 4 HOH B 15 515 15 HOH HOH . 
G 4 HOH B 16 516 3 HOH HOH . 
G 4 HOH B 17 517 46 HOH HOH . 
G 4 HOH B 18 518 8 HOH HOH . 
G 4 HOH B 19 519 21 HOH HOH . 
G 4 HOH B 20 520 70 HOH HOH . 
G 4 HOH B 21 521 30 HOH HOH . 
G 4 HOH B 22 522 50 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA FWL . . . E 3 7.154 23.857 -27.22 0.74 55.65 ? CHA FWL 402 B 1 
HETATM 2 C C1A FWL . . . E 3 8.291 22.889 -26.989 0.74 58.57 ? C1A FWL 402 B 1 
HETATM 3 C C2A FWL . . . E 3 8.827 22.521 -25.641 0.74 59.46 ? C2A FWL 402 B 1 
HETATM 4 C C3A FWL . . . E 3 9.92 21.55 -25.872 0.74 61.6 ? C3A FWL 402 B 1 
HETATM 5 C C4A FWL . . . E 3 9.896 21.457 -27.347 0.74 65.32 ? C4A FWL 402 B 1 
HETATM 6 N NA FWL . . . E 3 8.971 22.22 -27.948 0.74 64.2 ? NA FWL 402 B 1 
HETATM 7 C C5A FWL . . . E 3 8.343 23.037 -24.314 0.74 58.15 ? C5A FWL 402 B 1 
HETATM 8 C C6A FWL . . . E 3 7.21 22.169 -23.826 0.74 61.76 ? C6A FWL 402 B 1 
HETATM 9 O O1A FWL . . . E 3 6.662 21.388 -24.634 0.74 61.23 ? O1A FWL 402 B 1 
HETATM 10 O O2A FWL . . . E 3 6.86 22.27 -22.631 0.74 62.73 ? O2A FWL 402 B 1 
HETATM 11 C C7A FWL . . . E 3 10.803 20.858 -24.857 0.74 61.82 ? C7A FWL 402 B 1 
HETATM 12 C C8A FWL . . . E 3 10.527 19.359 -24.83 0.74 65.64 ? C8A FWL 402 B 1 
HETATM 13 C C9A FWL . . . E 3 11.449 18.699 -23.83 0.74 65.52 ? C9A FWL 402 B 1 
HETATM 14 O O3A FWL . . . E 3 11.238 17.506 -23.519 0.74 65.73 ? O3A FWL 402 B 1 
HETATM 15 O O4A FWL . . . E 3 12.393 19.367 -23.354 0.74 61.87 ? O4A FWL 402 B 1 
HETATM 16 N N1 FWL . . . E 3 6.552 23.617 -28.517 0.74 55.51 ? N1 FWL 402 B 1 
HETATM 17 I I4A FWL . . . E 3 11.243 20.204 -28.45 0.74 107.91 ? I4A FWL 402 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           17 
#