data_7CEE # _model_server_result.job_id Chdf5Ai2LCSNgrvFNKmPsA _model_server_result.datetime_utc '2024-10-19 10:22:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cee # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 7CEE # _exptl.entry_id 7CEE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CEE _cell.length_a 65.842 _cell.length_b 167.142 _cell.length_c 177.95 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CEE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 68 A CYS 103 1_555 A SG CYS 103 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 282 A CYS 317 1_555 A SG CYS 293 A CYS 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 452 A CYS 487 1_555 A SG CYS 486 A CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 B SG CYS 68 B CYS 103 1_555 B SG CYS 103 B CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 282 B CYS 317 1_555 B SG CYS 293 B CYS 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 B SG CYS 452 B CYS 487 1_555 B SG CYS 486 B CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 60 A ASN 95 1_555 C C1 NAG . A NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale2 A ND2 ASN 487 A ASN 522 1_555 D C1 NAG . A NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale3 B ND2 ASN 60 B ASN 95 1_555 E C1 NAG . B NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 B ND2 ASN 487 B ASN 522 1_555 F C1 NAG . B NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7CEE _atom_sites.fract_transf_matrix[1][1] 0.015188 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005983 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00562 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 1001 1001 NAG NAG . D 2 NAG A 1 1002 1002 NAG NAG . E 2 NAG B 1 1001 1001 NAG NAG . F 2 NAG B 1 1002 1002 NAG NAG . G 3 HOH A 1 1101 16 HOH HOH . G 3 HOH A 2 1102 52 HOH HOH . G 3 HOH A 3 1103 55 HOH HOH . G 3 HOH A 4 1104 11 HOH HOH . G 3 HOH A 5 1105 5 HOH HOH . G 3 HOH A 6 1106 65 HOH HOH . G 3 HOH A 7 1107 14 HOH HOH . G 3 HOH A 8 1108 70 HOH HOH . G 3 HOH A 9 1109 30 HOH HOH . G 3 HOH A 10 1110 45 HOH HOH . G 3 HOH A 11 1111 29 HOH HOH . G 3 HOH A 12 1112 67 HOH HOH . G 3 HOH A 13 1113 10 HOH HOH . G 3 HOH A 14 1114 13 HOH HOH . G 3 HOH A 15 1115 61 HOH HOH . G 3 HOH A 16 1116 2 HOH HOH . G 3 HOH A 17 1117 18 HOH HOH . G 3 HOH A 18 1118 94 HOH HOH . G 3 HOH A 19 1119 50 HOH HOH . G 3 HOH A 20 1120 86 HOH HOH . G 3 HOH A 21 1121 6 HOH HOH . G 3 HOH A 22 1122 7 HOH HOH . G 3 HOH A 23 1123 51 HOH HOH . G 3 HOH A 24 1124 26 HOH HOH . G 3 HOH A 25 1125 71 HOH HOH . G 3 HOH A 26 1126 4 HOH HOH . G 3 HOH A 27 1127 73 HOH HOH . G 3 HOH A 28 1128 28 HOH HOH . G 3 HOH A 29 1129 79 HOH HOH . G 3 HOH A 30 1130 53 HOH HOH . G 3 HOH A 31 1131 36 HOH HOH . H 3 HOH B 1 1101 54 HOH HOH . H 3 HOH B 2 1102 3 HOH HOH . H 3 HOH B 3 1103 8 HOH HOH . H 3 HOH B 4 1104 78 HOH HOH . H 3 HOH B 5 1105 17 HOH HOH . H 3 HOH B 6 1106 92 HOH HOH . H 3 HOH B 7 1107 25 HOH HOH . H 3 HOH B 8 1108 32 HOH HOH . H 3 HOH B 9 1109 9 HOH HOH . H 3 HOH B 10 1110 42 HOH HOH . H 3 HOH B 11 1111 63 HOH HOH . H 3 HOH B 12 1112 38 HOH HOH . H 3 HOH B 13 1113 40 HOH HOH . H 3 HOH B 14 1114 27 HOH HOH . H 3 HOH B 15 1115 84 HOH HOH . H 3 HOH B 16 1116 39 HOH HOH . H 3 HOH B 17 1117 80 HOH HOH . H 3 HOH B 18 1118 19 HOH HOH . H 3 HOH B 19 1119 21 HOH HOH . H 3 HOH B 20 1120 48 HOH HOH . H 3 HOH B 21 1121 15 HOH HOH . H 3 HOH B 22 1122 34 HOH HOH . H 3 HOH B 23 1123 41 HOH HOH . H 3 HOH B 24 1124 58 HOH HOH . H 3 HOH B 25 1125 66 HOH HOH . H 3 HOH B 26 1126 46 HOH HOH . H 3 HOH B 27 1127 57 HOH HOH . H 3 HOH B 28 1128 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 2 37.979 39.296 18.216 1 130.89 ? C1 NAG 1002 A 1 HETATM 2 C C2 NAG . . . D 2 39.136 38.535 17.597 1 135.85 ? C2 NAG 1002 A 1 HETATM 3 C C3 NAG . . . D 2 40.444 39.111 18.121 1 135.82 ? C3 NAG 1002 A 1 HETATM 4 C C4 NAG . . . D 2 40.481 40.625 17.936 1 133.29 ? C4 NAG 1002 A 1 HETATM 5 C C5 NAG . . . D 2 39.16 41.315 18.314 1 133.16 ? C5 NAG 1002 A 1 HETATM 6 C C6 NAG . . . D 2 39.086 42.742 17.821 1 129.43 ? C6 NAG 1002 A 1 HETATM 7 C C7 NAG . . . D 2 39.266 36.171 16.949 1 130.34 ? C7 NAG 1002 A 1 HETATM 8 C C8 NAG . . . D 2 39.157 34.754 17.411 1 122.34 ? C8 NAG 1002 A 1 HETATM 9 N N2 NAG . . . D 2 39.055 37.108 17.886 1 136.07 ? N2 NAG 1002 A 1 HETATM 10 O O3 NAG . . . D 2 41.549 38.504 17.459 1 133.91 ? O3 NAG 1002 A 1 HETATM 11 O O4 NAG . . . D 2 41.507 41.163 18.768 1 134.84 ? O4 NAG 1002 A 1 HETATM 12 O O5 NAG . . . D 2 38.025 40.625 17.766 1 132.44 ? O5 NAG 1002 A 1 HETATM 13 O O6 NAG . . . D 2 37.93 43.408 18.309 1 127 ? O6 NAG 1002 A 1 HETATM 14 O O7 NAG . . . D 2 39.526 36.464 15.786 1 131.48 ? O7 NAG 1002 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #