data_7CEN # _model_server_result.job_id XhBsqxjVQK2sr8HXmIIfPQ _model_server_result.datetime_utc '2025-03-05 04:14:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cen # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7CEN # _exptl.entry_id 7CEN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CEN _cell.length_a 39.609 _cell.length_b 48.538 _cell.length_c 77.931 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CEN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 93 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc2 B FE HEM . A HEM 201 1_555 D O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc3 C MG MG . A MG 202 1_555 D O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? metalc ? metalc4 C MG MG . A MG 202 1_555 D O HOH . A HOH 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 7CEN _atom_sites.fract_transf_matrix[1][1] 0.025247 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020602 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012832 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 201 HEM HEM . C 3 MG A 1 202 1 MG MG . D 4 HOH A 1 301 14 HOH HOH . D 4 HOH A 2 302 18 HOH HOH . D 4 HOH A 3 303 11 HOH HOH . D 4 HOH A 4 304 20 HOH HOH . D 4 HOH A 5 305 25 HOH HOH . D 4 HOH A 6 306 97 HOH HOH . D 4 HOH A 7 307 86 HOH HOH . D 4 HOH A 8 308 55 HOH HOH . D 4 HOH A 9 309 6 HOH HOH . D 4 HOH A 10 310 76 HOH HOH . D 4 HOH A 11 311 9 HOH HOH . D 4 HOH A 12 312 74 HOH HOH . D 4 HOH A 13 313 7 HOH HOH . D 4 HOH A 14 314 100 HOH HOH . D 4 HOH A 15 315 48 HOH HOH . D 4 HOH A 16 316 89 HOH HOH . D 4 HOH A 17 317 15 HOH HOH . D 4 HOH A 18 318 29 HOH HOH . D 4 HOH A 19 319 5 HOH HOH . D 4 HOH A 20 320 96 HOH HOH . D 4 HOH A 21 321 50 HOH HOH . D 4 HOH A 22 322 60 HOH HOH . D 4 HOH A 23 323 37 HOH HOH . D 4 HOH A 24 324 30 HOH HOH . D 4 HOH A 25 325 39 HOH HOH . D 4 HOH A 26 326 13 HOH HOH . D 4 HOH A 27 327 19 HOH HOH . D 4 HOH A 28 328 41 HOH HOH . D 4 HOH A 29 329 1 HOH HOH . D 4 HOH A 30 330 12 HOH HOH . D 4 HOH A 31 331 35 HOH HOH . D 4 HOH A 32 332 99 HOH HOH . D 4 HOH A 33 333 8 HOH HOH . D 4 HOH A 34 334 46 HOH HOH . D 4 HOH A 35 335 2 HOH HOH . D 4 HOH A 36 336 82 HOH HOH . D 4 HOH A 37 337 40 HOH HOH . D 4 HOH A 38 338 32 HOH HOH . D 4 HOH A 39 339 24 HOH HOH . D 4 HOH A 40 340 104 HOH HOH . D 4 HOH A 41 341 65 HOH HOH . D 4 HOH A 42 342 67 HOH HOH . D 4 HOH A 43 343 3 HOH HOH . D 4 HOH A 44 344 73 HOH HOH . D 4 HOH A 45 345 112 HOH HOH . D 4 HOH A 46 346 23 HOH HOH . D 4 HOH A 47 347 45 HOH HOH . D 4 HOH A 48 348 84 HOH HOH . D 4 HOH A 49 349 26 HOH HOH . D 4 HOH A 50 350 63 HOH HOH . D 4 HOH A 51 351 17 HOH HOH . D 4 HOH A 52 352 21 HOH HOH . D 4 HOH A 53 353 34 HOH HOH . D 4 HOH A 54 354 10 HOH HOH . D 4 HOH A 55 355 31 HOH HOH . D 4 HOH A 56 356 87 HOH HOH . D 4 HOH A 57 357 105 HOH HOH . D 4 HOH A 58 358 70 HOH HOH . D 4 HOH A 59 359 4 HOH HOH . D 4 HOH A 60 360 111 HOH HOH . D 4 HOH A 61 361 61 HOH HOH . D 4 HOH A 62 362 43 HOH HOH . D 4 HOH A 63 363 16 HOH HOH . D 4 HOH A 64 364 58 HOH HOH . D 4 HOH A 65 365 101 HOH HOH . D 4 HOH A 66 366 80 HOH HOH . D 4 HOH A 67 367 28 HOH HOH . D 4 HOH A 68 368 81 HOH HOH . D 4 HOH A 69 369 38 HOH HOH . D 4 HOH A 70 370 64 HOH HOH . D 4 HOH A 71 371 66 HOH HOH . D 4 HOH A 72 372 62 HOH HOH . D 4 HOH A 73 373 44 HOH HOH . D 4 HOH A 74 374 51 HOH HOH . D 4 HOH A 75 375 47 HOH HOH . D 4 HOH A 76 376 42 HOH HOH . D 4 HOH A 77 377 71 HOH HOH . D 4 HOH A 78 378 110 HOH HOH . D 4 HOH A 79 379 36 HOH HOH . D 4 HOH A 80 380 56 HOH HOH . D 4 HOH A 81 381 92 HOH HOH . D 4 HOH A 82 382 22 HOH HOH . D 4 HOH A 83 383 75 HOH HOH . D 4 HOH A 84 384 108 HOH HOH . D 4 HOH A 85 385 49 HOH HOH . D 4 HOH A 86 386 33 HOH HOH . D 4 HOH A 87 387 95 HOH HOH . D 4 HOH A 88 388 85 HOH HOH . D 4 HOH A 89 389 78 HOH HOH . D 4 HOH A 90 390 88 HOH HOH . D 4 HOH A 91 391 77 HOH HOH . D 4 HOH A 92 392 106 HOH HOH . D 4 HOH A 93 393 72 HOH HOH . D 4 HOH A 94 394 107 HOH HOH . D 4 HOH A 95 395 54 HOH HOH . D 4 HOH A 96 396 103 HOH HOH . D 4 HOH A 97 397 90 HOH HOH . D 4 HOH A 98 398 57 HOH HOH . D 4 HOH A 99 399 52 HOH HOH . D 4 HOH A 100 400 94 HOH HOH . D 4 HOH A 101 401 79 HOH HOH . D 4 HOH A 102 402 59 HOH HOH . D 4 HOH A 103 403 102 HOH HOH . D 4 HOH A 104 404 27 HOH HOH . D 4 HOH A 105 405 98 HOH HOH . D 4 HOH A 106 406 109 HOH HOH . D 4 HOH A 107 407 93 HOH HOH . D 4 HOH A 108 408 91 HOH HOH . D 4 HOH A 109 409 69 HOH HOH . D 4 HOH A 110 410 53 HOH HOH . D 4 HOH A 111 411 68 HOH HOH . D 4 HOH A 112 412 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -5.818 -9.234 9.439 1 30.83 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . B 2 -4.767 -6.923 5.199 1 27.27 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . B 2 -5.321 -2.598 7.526 1 30.87 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . B 2 -5.572 -4.961 11.803 1 33.1 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . B 2 -5.528 -8.878 8.07 1 31.88 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . B 2 -5.335 -9.992 7.103 1 33.45 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . B 2 -5.02 -9.344 5.828 1 36.82 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . B 2 -5.045 -7.913 6.22 1 27.44 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . B 2 -4.725 -9.982 4.485 1 27.74 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . B 2 -5.486 -11.463 7.367 1 30.36 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . B 2 -6.883 -11.784 6.811 1 36.01 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . B 2 -7.986 -10.801 7.222 1 29.48 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . B 2 -8.387 -10.745 8.363 1 32.91 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . B 2 -8.584 -9.976 6.371 1 26.39 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . B 2 -4.578 -5.52 5.497 1 32.96 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . B 2 -4.128 -4.515 4.489 1 29.46 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . B 2 -4.17 -3.308 5.327 1 28.99 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . B 2 -4.498 -3.561 6.747 1 28.7 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . B 2 -3.781 -4.76 3.046 1 33.48 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . B 2 -3.774 -1.931 4.945 1 29.11 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . B 2 -3.094 -1.64 3.855 1 28.57 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . B 2 -5.346 -2.739 9.002 1 31.49 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . B 2 -5.301 -1.62 9.989 1 35.36 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . B 2 -5.404 -2.382 11.262 1 32.29 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . B 2 -5.485 -3.822 10.895 1 30.69 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . B 2 -5.189 -0.145 9.681 1 34.04 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . B 2 -5.421 -1.88 12.667 1 32.85 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . B 2 -5.334 -0.597 12.989 1 28.87 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . B 2 -6.407 -6.057 11.281 1 32.54 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . B 2 -6.621 -7.107 12.292 1 40.15 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . B 2 -6.491 -8.46 11.75 1 37.26 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . B 2 -6.078 -8.17 10.365 1 31.7 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . B 2 -7.029 -6.666 13.683 1 37.04 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . B 2 -6.632 -9.783 12.424 1 42.54 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . B 2 -5.202 -9.996 12.919 1 37.19 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . B 2 -5.124 -11.352 13.553 1 40.34 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . B 2 -5.559 -11.514 14.678 1 44.71 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . B 2 -4.608 -12.378 12.872 1 53.14 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . B 2 -5.285 -7.594 7.674 1 31.92 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . B 2 -4.819 -5.019 6.721 1 29.49 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . B 2 -5.392 -4.11 9.59 1 30.41 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . B 2 -5.97 -6.856 10.073 1 31.62 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . B 2 -5.519 -5.746 8.448 1 29.38 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #