data_7CEP # _model_server_result.job_id KCB01Hp1Thyyui7Ng4q38Q _model_server_result.datetime_utc '2024-11-29 03:43:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cep # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":507}' # _entry.id 7CEP # _exptl.entry_id 7CEP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 331.219 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(5-hydroxy-6-methyl-4-{[(3-oxo-2,3-dihydro-1,2-oxazol-4-yl)amino]methyl}pyridin-3-yl)methyl dihydrogen phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7CEP _cell.length_a 92.8 _cell.length_b 92.8 _cell.length_c 128.68 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CEP _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -85.786667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H14 N3 O7 P' _chem_comp.formula_weight 331.219 _chem_comp.id 7TS _chem_comp.mon_nstd_flag . _chem_comp.name '(5-hydroxy-6-methyl-4-{[(3-oxo-2,3-dihydro-1,2-oxazol-4-yl)amino]methyl}pyridin-3-yl)methyl dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2P P 7TS doub 1 n n O1P P 7TS sing 2 n n P O3P 7TS sing 3 n n P O4P 7TS sing 4 n n OG CB 7TS sing 5 n n OG ND 7TS sing 6 n n CB CA 7TS doub 7 n n O4P C5A 7TS sing 8 n n ND C 7TS sing 9 n n C5A C5 7TS sing 10 n n CA C 7TS sing 11 n n CA N 7TS sing 12 n n C O 7TS doub 13 n n C4A N 7TS sing 14 n n C4A C4 7TS sing 15 n n C5 C4 7TS doub 16 n y C5 C6 7TS sing 17 n y C4 C3 7TS sing 18 n y C6 N1 7TS doub 19 n y C3 O3 7TS sing 20 n n C3 C2 7TS doub 21 n y N1 C2 7TS sing 22 n y C2 C2A 7TS sing 23 n n C2A H1 7TS sing 24 n n C2A H2 7TS sing 25 n n C2A H3 7TS sing 26 n n O3 H4 7TS sing 27 n n C4A H5 7TS sing 28 n n C4A H6 7TS sing 29 n n C6 H7 7TS sing 30 n n C5A H8 7TS sing 31 n n C5A H9 7TS sing 32 n n O1P H10 7TS sing 33 n n O3P H11 7TS sing 34 n n N H12 7TS sing 35 n n ND H13 7TS sing 36 n n CB H14 7TS sing 37 n n # _atom_sites.entry_id 7CEP _atom_sites.fract_transf_matrix[1][1] 0.010776 _atom_sites.fract_transf_matrix[1][2] 0.006221 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007771 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG A 1 501 1 PEG PEG . C 2 PEG A 1 502 2 PEG PEG . D 2 PEG A 1 503 3 PEG PEG . E 2 PEG A 1 504 4 PEG PEG . F 2 PEG A 1 505 5 PEG PEG . G 2 PEG A 1 506 6 PEG PEG . H 3 7TS A 1 507 1 7TS PMH . I 4 PGE A 1 508 1 PGE PGE . J 5 HOH A 1 601 151 HOH HOH . J 5 HOH A 2 602 160 HOH HOH . J 5 HOH A 3 603 83 HOH HOH . J 5 HOH A 4 604 247 HOH HOH . J 5 HOH A 5 605 74 HOH HOH . J 5 HOH A 6 606 9 HOH HOH . J 5 HOH A 7 607 178 HOH HOH . J 5 HOH A 8 608 121 HOH HOH . J 5 HOH A 9 609 181 HOH HOH . J 5 HOH A 10 610 153 HOH HOH . J 5 HOH A 11 611 207 HOH HOH . J 5 HOH A 12 612 10 HOH HOH . J 5 HOH A 13 613 3 HOH HOH . J 5 HOH A 14 614 29 HOH HOH . J 5 HOH A 15 615 148 HOH HOH . J 5 HOH A 16 616 192 HOH HOH . J 5 HOH A 17 617 55 HOH HOH . J 5 HOH A 18 618 44 HOH HOH . J 5 HOH A 19 619 115 HOH HOH . J 5 HOH A 20 620 158 HOH HOH . J 5 HOH A 21 621 6 HOH HOH . J 5 HOH A 22 622 105 HOH HOH . J 5 HOH A 23 623 94 HOH HOH . J 5 HOH A 24 624 99 HOH HOH . J 5 HOH A 25 625 40 HOH HOH . J 5 HOH A 26 626 187 HOH HOH . J 5 HOH A 27 627 72 HOH HOH . J 5 HOH A 28 628 100 HOH HOH . J 5 HOH A 29 629 233 HOH HOH . J 5 HOH A 30 630 34 HOH HOH . J 5 HOH A 31 631 120 HOH HOH . J 5 HOH A 32 632 4 HOH HOH . J 5 HOH A 33 633 137 HOH HOH . J 5 HOH A 34 634 139 HOH HOH . J 5 HOH A 35 635 171 HOH HOH . J 5 HOH A 36 636 42 HOH HOH . J 5 HOH A 37 637 101 HOH HOH . J 5 HOH A 38 638 127 HOH HOH . J 5 HOH A 39 639 51 HOH HOH . J 5 HOH A 40 640 64 HOH HOH . J 5 HOH A 41 641 149 HOH HOH . J 5 HOH A 42 642 19 HOH HOH . J 5 HOH A 43 643 161 HOH HOH . J 5 HOH A 44 644 103 HOH HOH . J 5 HOH A 45 645 206 HOH HOH . J 5 HOH A 46 646 92 HOH HOH . J 5 HOH A 47 647 129 HOH HOH . J 5 HOH A 48 648 140 HOH HOH . J 5 HOH A 49 649 60 HOH HOH . J 5 HOH A 50 650 41 HOH HOH . J 5 HOH A 51 651 76 HOH HOH . J 5 HOH A 52 652 169 HOH HOH . J 5 HOH A 53 653 85 HOH HOH . J 5 HOH A 54 654 15 HOH HOH . J 5 HOH A 55 655 46 HOH HOH . J 5 HOH A 56 656 69 HOH HOH . J 5 HOH A 57 657 78 HOH HOH . J 5 HOH A 58 658 162 HOH HOH . J 5 HOH A 59 659 24 HOH HOH . J 5 HOH A 60 660 18 HOH HOH . J 5 HOH A 61 661 91 HOH HOH . J 5 HOH A 62 662 70 HOH HOH . J 5 HOH A 63 663 11 HOH HOH . J 5 HOH A 64 664 182 HOH HOH . J 5 HOH A 65 665 23 HOH HOH . J 5 HOH A 66 666 12 HOH HOH . J 5 HOH A 67 667 35 HOH HOH . J 5 HOH A 68 668 16 HOH HOH . J 5 HOH A 69 669 33 HOH HOH . J 5 HOH A 70 670 179 HOH HOH . J 5 HOH A 71 671 27 HOH HOH . J 5 HOH A 72 672 119 HOH HOH . J 5 HOH A 73 673 5 HOH HOH . J 5 HOH A 74 674 59 HOH HOH . J 5 HOH A 75 675 196 HOH HOH . J 5 HOH A 76 676 39 HOH HOH . J 5 HOH A 77 677 43 HOH HOH . J 5 HOH A 78 678 177 HOH HOH . J 5 HOH A 79 679 81 HOH HOH . J 5 HOH A 80 680 75 HOH HOH . J 5 HOH A 81 681 86 HOH HOH . J 5 HOH A 82 682 54 HOH HOH . J 5 HOH A 83 683 223 HOH HOH . J 5 HOH A 84 684 84 HOH HOH . J 5 HOH A 85 685 87 HOH HOH . J 5 HOH A 86 686 82 HOH HOH . J 5 HOH A 87 687 89 HOH HOH . J 5 HOH A 88 688 145 HOH HOH . J 5 HOH A 89 689 159 HOH HOH . J 5 HOH A 90 690 211 HOH HOH . J 5 HOH A 91 691 61 HOH HOH . J 5 HOH A 92 692 112 HOH HOH . J 5 HOH A 93 693 190 HOH HOH . J 5 HOH A 94 694 248 HOH HOH . J 5 HOH A 95 695 110 HOH HOH . J 5 HOH A 96 696 133 HOH HOH . J 5 HOH A 97 697 173 HOH HOH . J 5 HOH A 98 698 191 HOH HOH . J 5 HOH A 99 699 36 HOH HOH . J 5 HOH A 100 700 63 HOH HOH . J 5 HOH A 101 701 13 HOH HOH . J 5 HOH A 102 702 95 HOH HOH . J 5 HOH A 103 703 17 HOH HOH . J 5 HOH A 104 704 53 HOH HOH . J 5 HOH A 105 705 113 HOH HOH . J 5 HOH A 106 706 56 HOH HOH . J 5 HOH A 107 707 52 HOH HOH . J 5 HOH A 108 708 197 HOH HOH . J 5 HOH A 109 709 79 HOH HOH . J 5 HOH A 110 710 111 HOH HOH . J 5 HOH A 111 711 96 HOH HOH . J 5 HOH A 112 712 208 HOH HOH . J 5 HOH A 113 713 14 HOH HOH . J 5 HOH A 114 714 26 HOH HOH . J 5 HOH A 115 715 199 HOH HOH . J 5 HOH A 116 716 30 HOH HOH . J 5 HOH A 117 717 20 HOH HOH . J 5 HOH A 118 718 22 HOH HOH . J 5 HOH A 119 719 50 HOH HOH . J 5 HOH A 120 720 170 HOH HOH . J 5 HOH A 121 721 21 HOH HOH . J 5 HOH A 122 722 58 HOH HOH . J 5 HOH A 123 723 164 HOH HOH . J 5 HOH A 124 724 31 HOH HOH . J 5 HOH A 125 725 201 HOH HOH . J 5 HOH A 126 726 28 HOH HOH . J 5 HOH A 127 727 97 HOH HOH . J 5 HOH A 128 728 8 HOH HOH . J 5 HOH A 129 729 236 HOH HOH . J 5 HOH A 130 730 215 HOH HOH . J 5 HOH A 131 731 156 HOH HOH . J 5 HOH A 132 732 62 HOH HOH . J 5 HOH A 133 733 88 HOH HOH . J 5 HOH A 134 734 48 HOH HOH . J 5 HOH A 135 735 109 HOH HOH . J 5 HOH A 136 736 117 HOH HOH . J 5 HOH A 137 737 144 HOH HOH . J 5 HOH A 138 738 25 HOH HOH . J 5 HOH A 139 739 142 HOH HOH . J 5 HOH A 140 740 165 HOH HOH . J 5 HOH A 141 741 7 HOH HOH . J 5 HOH A 142 742 73 HOH HOH . J 5 HOH A 143 743 186 HOH HOH . J 5 HOH A 144 744 68 HOH HOH . J 5 HOH A 145 745 168 HOH HOH . J 5 HOH A 146 746 244 HOH HOH . J 5 HOH A 147 747 106 HOH HOH . J 5 HOH A 148 748 38 HOH HOH . J 5 HOH A 149 749 93 HOH HOH . J 5 HOH A 150 750 45 HOH HOH . J 5 HOH A 151 751 240 HOH HOH . J 5 HOH A 152 752 210 HOH HOH . J 5 HOH A 153 753 102 HOH HOH . J 5 HOH A 154 754 47 HOH HOH . J 5 HOH A 155 755 141 HOH HOH . J 5 HOH A 156 756 216 HOH HOH . J 5 HOH A 157 757 2 HOH HOH . J 5 HOH A 158 758 202 HOH HOH . J 5 HOH A 159 759 132 HOH HOH . J 5 HOH A 160 760 32 HOH HOH . J 5 HOH A 161 761 221 HOH HOH . J 5 HOH A 162 762 128 HOH HOH . J 5 HOH A 163 763 189 HOH HOH . J 5 HOH A 164 764 77 HOH HOH . J 5 HOH A 165 765 49 HOH HOH . J 5 HOH A 166 766 226 HOH HOH . J 5 HOH A 167 767 167 HOH HOH . J 5 HOH A 168 768 138 HOH HOH . J 5 HOH A 169 769 147 HOH HOH . J 5 HOH A 170 770 209 HOH HOH . J 5 HOH A 171 771 131 HOH HOH . J 5 HOH A 172 772 90 HOH HOH . J 5 HOH A 173 773 135 HOH HOH . J 5 HOH A 174 774 126 HOH HOH . J 5 HOH A 175 775 67 HOH HOH . J 5 HOH A 176 776 212 HOH HOH . J 5 HOH A 177 777 198 HOH HOH . J 5 HOH A 178 778 166 HOH HOH . J 5 HOH A 179 779 234 HOH HOH . J 5 HOH A 180 780 188 HOH HOH . J 5 HOH A 181 781 125 HOH HOH . J 5 HOH A 182 782 124 HOH HOH . J 5 HOH A 183 783 118 HOH HOH . J 5 HOH A 184 784 185 HOH HOH . J 5 HOH A 185 785 184 HOH HOH . J 5 HOH A 186 786 37 HOH HOH . J 5 HOH A 187 787 108 HOH HOH . J 5 HOH A 188 788 205 HOH HOH . J 5 HOH A 189 789 245 HOH HOH . J 5 HOH A 190 790 134 HOH HOH . J 5 HOH A 191 791 230 HOH HOH . J 5 HOH A 192 792 224 HOH HOH . J 5 HOH A 193 793 116 HOH HOH . J 5 HOH A 194 794 1 HOH HOH . J 5 HOH A 195 795 57 HOH HOH . J 5 HOH A 196 796 242 HOH HOH . J 5 HOH A 197 797 231 HOH HOH . J 5 HOH A 198 798 176 HOH HOH . J 5 HOH A 199 799 239 HOH HOH . J 5 HOH A 200 800 71 HOH HOH . J 5 HOH A 201 801 232 HOH HOH . J 5 HOH A 202 802 225 HOH HOH . J 5 HOH A 203 803 229 HOH HOH . J 5 HOH A 204 804 195 HOH HOH . J 5 HOH A 205 805 175 HOH HOH . J 5 HOH A 206 806 114 HOH HOH . J 5 HOH A 207 807 213 HOH HOH . J 5 HOH A 208 808 107 HOH HOH . J 5 HOH A 209 809 237 HOH HOH . J 5 HOH A 210 810 155 HOH HOH . J 5 HOH A 211 811 217 HOH HOH . J 5 HOH A 212 812 227 HOH HOH . J 5 HOH A 213 813 222 HOH HOH . J 5 HOH A 214 814 146 HOH HOH . J 5 HOH A 215 815 220 HOH HOH . J 5 HOH A 216 816 80 HOH HOH . J 5 HOH A 217 817 122 HOH HOH . J 5 HOH A 218 818 183 HOH HOH . J 5 HOH A 219 819 193 HOH HOH . J 5 HOH A 220 820 136 HOH HOH . J 5 HOH A 221 821 204 HOH HOH . J 5 HOH A 222 822 66 HOH HOH . J 5 HOH A 223 823 98 HOH HOH . J 5 HOH A 224 824 241 HOH HOH . J 5 HOH A 225 825 219 HOH HOH . J 5 HOH A 226 826 243 HOH HOH . J 5 HOH A 227 827 246 HOH HOH . J 5 HOH A 228 828 214 HOH HOH . J 5 HOH A 229 829 174 HOH HOH . J 5 HOH A 230 830 143 HOH HOH . J 5 HOH A 231 831 150 HOH HOH . J 5 HOH A 232 832 200 HOH HOH . J 5 HOH A 233 833 154 HOH HOH . J 5 HOH A 234 834 157 HOH HOH . J 5 HOH A 235 835 235 HOH HOH . J 5 HOH A 236 836 218 HOH HOH . J 5 HOH A 237 837 152 HOH HOH . J 5 HOH A 238 838 180 HOH HOH . J 5 HOH A 239 839 104 HOH HOH . J 5 HOH A 240 840 194 HOH HOH . J 5 HOH A 241 841 172 HOH HOH . J 5 HOH A 242 842 203 HOH HOH . J 5 HOH A 243 843 163 HOH HOH . J 5 HOH A 244 844 65 HOH HOH . J 5 HOH A 245 845 130 HOH HOH . J 5 HOH A 246 846 123 HOH HOH . J 5 HOH A 247 847 238 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 7TS . . . H 3 -33.46 31.167 -34.13 1 33.7 ? N1 7TS 507 A 1 HETATM 2 C C2 7TS . . . H 3 -34.706 31.554 -33.81 1 41.6 ? C2 7TS 507 A 1 HETATM 3 C C2A 7TS . . . H 3 -35.31 31.112 -32.646 1 35.9 ? C2A 7TS 507 A 1 HETATM 4 C C3 7TS . . . H 3 -35.388 32.409 -34.66 1 39.18 ? C3 7TS 507 A 1 HETATM 5 O O3 7TS . . . H 3 -36.64 32.807 -34.347 1 33.52 ? O3 7TS 507 A 1 HETATM 6 C C4 7TS . . . H 3 -34.84 32.886 -35.829 1 29.52 ? C4 7TS 507 A 1 HETATM 7 C C4A 7TS . . . H 3 -35.551 33.738 -36.681 1 31.38 ? C4A 7TS 507 A 1 HETATM 8 C C5 7TS . . . H 3 -33.557 32.495 -36.148 1 31.62 ? C5 7TS 507 A 1 HETATM 9 C C6 7TS . . . H 3 -32.857 31.625 -35.311 1 32.83 ? C6 7TS 507 A 1 HETATM 10 C C5A 7TS . . . H 3 -33.053 32.997 -37.338 1 36.52 ? C5A 7TS 507 A 1 HETATM 11 O O4P 7TS . . . H 3 -32.057 33.991 -37.127 1 35.44 ? O4P 7TS 507 A 1 HETATM 12 P P 7TS . . . H 3 -31.784 35.038 -38.267 1 28.19 ? P 7TS 507 A 1 HETATM 13 O O1P 7TS . . . H 3 -32.144 36.566 -37.839 1 27.83 ? O1P 7TS 507 A 1 HETATM 14 O O2P 7TS . . . H 3 -32.67 34.718 -39.394 1 26.78 ? O2P 7TS 507 A 1 HETATM 15 O O3P 7TS . . . H 3 -30.226 34.774 -38.636 1 31.77 ? O3P 7TS 507 A 1 HETATM 16 N N 7TS . . . H 3 -36.953 33.281 -36.757 1 49.78 ? N 7TS 507 A 1 HETATM 17 C CA 7TS . . . H 3 -37.815 33.54 -37.757 1 59.26 ? CA 7TS 507 A 1 HETATM 18 C C 7TS . . . H 3 -39.094 33.12 -37.806 1 55.29 ? C 7TS 507 A 1 HETATM 19 O O 7TS . . . H 3 -39.732 32.375 -36.868 1 48.5 ? O 7TS 507 A 1 HETATM 20 N ND 7TS . . . H 3 -39.707 33.525 -38.923 1 47.06 ? ND 7TS 507 A 1 HETATM 21 O OG 7TS . . . H 3 -38.673 34.304 -39.673 1 59.19 ? OG 7TS 507 A 1 HETATM 22 C CB 7TS . . . H 3 -37.503 34.254 -38.846 1 59.15 ? CB 7TS 507 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #