data_7CEU # _model_server_result.job_id 7mZs5RiLH3ijSnFkcC4ApA _model_server_result.datetime_utc '2024-11-28 01:51:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ceu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 7CEU # _exptl.entry_id 7CEU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 331.219 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(5-hydroxy-6-methyl-4-{[(3-oxo-2,3-dihydro-1,2-oxazol-4-yl)amino]methyl}pyridin-3-yl)methyl dihydrogen phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CEU _cell.length_a 103.21 _cell.length_b 103.21 _cell.length_c 134.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CEU _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H14 N3 O7 P' _chem_comp.formula_weight 331.219 _chem_comp.id 7TS _chem_comp.mon_nstd_flag . _chem_comp.name '(5-hydroxy-6-methyl-4-{[(3-oxo-2,3-dihydro-1,2-oxazol-4-yl)amino]methyl}pyridin-3-yl)methyl dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2P P 7TS doub 1 n n O1P P 7TS sing 2 n n P O3P 7TS sing 3 n n P O4P 7TS sing 4 n n OG CB 7TS sing 5 n n OG ND 7TS sing 6 n n CB CA 7TS doub 7 n n O4P C5A 7TS sing 8 n n ND C 7TS sing 9 n n C5A C5 7TS sing 10 n n CA C 7TS sing 11 n n CA N 7TS sing 12 n n C O 7TS doub 13 n n C4A N 7TS sing 14 n n C4A C4 7TS sing 15 n n C5 C4 7TS doub 16 n y C5 C6 7TS sing 17 n y C4 C3 7TS sing 18 n y C6 N1 7TS doub 19 n y C3 O3 7TS sing 20 n n C3 C2 7TS doub 21 n y N1 C2 7TS sing 22 n y C2 C2A 7TS sing 23 n n C2A H1 7TS sing 24 n n C2A H2 7TS sing 25 n n C2A H3 7TS sing 26 n n O3 H4 7TS sing 27 n n C4A H5 7TS sing 28 n n C4A H6 7TS sing 29 n n C6 H7 7TS sing 30 n n C5A H8 7TS sing 31 n n C5A H9 7TS sing 32 n n O1P H10 7TS sing 33 n n O3P H11 7TS sing 34 n n N H12 7TS sing 35 n n ND H13 7TS sing 36 n n CB H14 7TS sing 37 n n # _atom_sites.entry_id 7CEU _atom_sites.fract_transf_matrix[1][1] 0.009689 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009689 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007457 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IPA A 1 501 1 IPA IPA . C 3 7TS A 1 502 1 7TS PMH . D 4 HOH A 1 601 7 HOH HOH . D 4 HOH A 2 602 5 HOH HOH . D 4 HOH A 3 603 8 HOH HOH . D 4 HOH A 4 604 2 HOH HOH . D 4 HOH A 5 605 3 HOH HOH . D 4 HOH A 6 606 1 HOH HOH . D 4 HOH A 7 607 6 HOH HOH . D 4 HOH A 8 608 9 HOH HOH . D 4 HOH A 9 609 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 7TS . . . C 3 -18.845 -18.81 -14.603 1 62.81 ? N1 7TS 502 A 1 HETATM 2 C C2 7TS . . . C 3 -19.561 -19.209 -15.643 1 68.73 ? C2 7TS 502 A 1 HETATM 3 C C2A 7TS . . . C 3 -18.82 -19.5 -16.782 1 75.17 ? C2A 7TS 502 A 1 HETATM 4 C C3 7TS . . . C 3 -20.975 -19.302 -15.574 1 63.53 ? C3 7TS 502 A 1 HETATM 5 O O3 7TS . . . C 3 -21.674 -19.726 -16.673 1 58.19 ? O3 7TS 502 A 1 HETATM 6 C C4 7TS . . . C 3 -21.703 -18.992 -14.432 1 65.31 ? C4 7TS 502 A 1 HETATM 7 C C4A 7TS . . . C 3 -23.117 -19.122 -14.396 1 68.56 ? C4A 7TS 502 A 1 HETATM 8 C C5 7TS . . . C 3 -20.931 -18.561 -13.317 1 70.44 ? C5 7TS 502 A 1 HETATM 9 C C6 7TS . . . C 3 -19.534 -18.478 -13.446 1 76.76 ? C6 7TS 502 A 1 HETATM 10 C C5A 7TS . . . C 3 -21.448 -18.207 -12.035 1 55.84 ? C5A 7TS 502 A 1 HETATM 11 O O4P 7TS . . . C 3 -21.93 -19.419 -11.436 1 51.52 ? O4P 7TS 502 A 1 HETATM 12 P P 7TS . . . C 3 -22.369 -19.461 -9.878 1 41.42 ? P 7TS 502 A 1 HETATM 13 O O1P 7TS . . . C 3 -21.212 -19.035 -8.953 1 41 ? O1P 7TS 502 A 1 HETATM 14 O O2P 7TS . . . C 3 -23.786 -18.542 -9.689 1 32.25 ? O2P 7TS 502 A 1 HETATM 15 O O3P 7TS . . . C 3 -22.735 -21.038 -9.669 1 32.88 ? O3P 7TS 502 A 1 HETATM 16 N N 7TS . . . C 3 -23.796 -18.698 -15.653 1 84.38 ? N 7TS 502 A 1 HETATM 17 C CA 7TS . . . C 3 -25.042 -18.161 -15.704 1 98.21 ? CA 7TS 502 A 1 HETATM 18 C C 7TS . . . C 3 -25.778 -17.652 -16.73 1 106.13 ? C 7TS 502 A 1 HETATM 19 O O 7TS . . . C 3 -25.515 -17.498 -18.081 1 83.73 ? O 7TS 502 A 1 HETATM 20 N ND 7TS . . . C 3 -26.957 -17.243 -16.244 1 103.61 ? ND 7TS 502 A 1 HETATM 21 O OG 7TS . . . C 3 -26.942 -17.495 -14.929 1 87.73 ? OG 7TS 502 A 1 HETATM 22 C CB 7TS . . . C 3 -25.788 -18.055 -14.603 1 94.24 ? CB 7TS 502 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #