data_7CF6
#
_model_server_result.job_id            8DYyun_gtzbyYPwUPr1LrA 
_model_server_result.datetime_utc      '2024-11-27 20:37:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7cf6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":404}' 
#
_entry.id    7CF6 
#
_exptl.entry_id    7CF6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7CF6 
_cell.length_a            78.609 
_cell.length_b            150.425 
_cell.length_c            151.996 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7CF6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        17 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 L N N 
? 2 N N N 
? 2 O N N 
? 2 S N N 
? 2 U N N 
? 2 V N N 
? 2 Z N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 67 B HIS 63 1_555 K ZN ZN . B ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? 
metalc ? metalc2 A OE1 GLU 160 B GLU 156 1_555 J ZN ZN . B ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc3 A ND1 HIS 199 B HIS 195 1_555 J ZN ZN . B ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc4 A NE2 HIS 228 B HIS 224 1_555 J ZN ZN . B ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc5 A OD1 ASP 289 B ASP 285 1_555 K ZN ZN . B ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? 
metalc ? metalc6 I N07 FWO . B FWO 405 1_555 K ZN ZN . B ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc7 B NE2 HIS 65 A HIS 61 1_555 R ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? 
metalc ? metalc8 B NE2 HIS 67 A HIS 63 1_555 R ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? 
metalc ? metalc9 B OE1 GLU 160 A GLU 156 1_555 Q ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc10 B OE2 GLU 160 A GLU 156 1_555 R ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? 
metalc ? metalc11 B ND1 HIS 199 A HIS 195 1_555 Q ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? 
metalc ? metalc12 C OE2 GLU 160 C GLU 156 1_555 X ZN ZN . C ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? 
metalc ? metalc13 C OE1 GLU 160 C GLU 156 1_555 Y ZN ZN . C ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? 
metalc ? metalc14 C ND1 HIS 199 C HIS 195 1_555 Y ZN ZN . C ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc15 C NE2 HIS 228 C HIS 224 1_555 Y ZN ZN . C ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc16 D NE2 HIS 67 D HIS 63 1_555 BA ZN ZN . D ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? 
metalc ? metalc17 D OE2 GLU 160 D GLU 156 1_555 BA ZN ZN . D ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc18 D OE1 GLU 160 D GLU 156 1_555 CA ZN ZN . D ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? 
metalc ? metalc19 D ND1 HIS 199 D HIS 195 1_555 CA ZN ZN . D ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc20 AA N07 FWO . D FWO 402 1_555 BA ZN ZN . D ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 163 n n 
C1 C2 GOL sing 164 n n 
C1 H11 GOL sing 165 n n 
C1 H12 GOL sing 166 n n 
O1 HO1 GOL sing 167 n n 
C2 O2 GOL sing 168 n n 
C2 C3 GOL sing 169 n n 
C2 H2 GOL sing 170 n n 
O2 HO2 GOL sing 171 n n 
C3 O3 GOL sing 172 n n 
C3 H31 GOL sing 173 n n 
C3 H32 GOL sing 174 n n 
O3 HO3 GOL sing 175 n n 
#
_atom_sites.entry_id                     7CF6 
_atom_sites.fract_transf_matrix[1][1]    0.012721 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006648 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006579 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 GOL B 1 401 401 GOL GOL . 
F 2 GOL B 1 402 501 GOL GOL . 
G 2 GOL B 1 403 601 GOL GOL . 
H 2 GOL B 1 404 701 GOL GOL . 
I 3 FWO B 1 405 801 FWO LIG . 
J 4 ZN B 1 406 9 ZN ZN . 
K 4 ZN B 1 407 10 ZN ZN . 
L 2 GOL A 1 401 401 GOL GOL . 
M 5 PEG A 1 402 501 PEG PEG . 
N 2 GOL A 1 403 601 GOL GOL . 
O 2 GOL A 1 404 701 GOL GOL . 
P 3 FWO A 1 405 801 FWO LIG . 
Q 4 ZN A 1 406 11 ZN ZN . 
R 4 ZN A 1 407 12 ZN ZN . 
S 2 GOL C 1 401 401 GOL GOL . 
T 5 PEG C 1 402 501 PEG PEG . 
U 2 GOL C 1 403 601 GOL GOL . 
V 2 GOL C 1 404 701 GOL GOL . 
W 3 FWO C 1 405 801 FWO LIG . 
X 4 ZN C 1 406 5 ZN ZN . 
Y 4 ZN C 1 407 6 ZN ZN . 
Z 2 GOL D 1 401 401 GOL GOL . 
AA 3 FWO D 1 402 501 FWO LIG . 
BA 4 ZN D 1 403 7 ZN ZN . 
CA 4 ZN D 1 404 8 ZN ZN . 
DA 6 HOH B 1 501 3 HOH HOH . 
DA 6 HOH B 2 502 11 HOH HOH . 
DA 6 HOH B 3 503 28 HOH HOH . 
DA 6 HOH B 4 504 20 HOH HOH . 
DA 6 HOH B 5 505 25 HOH HOH . 
DA 6 HOH B 6 506 1 HOH HOH . 
DA 6 HOH B 7 507 2 HOH HOH . 
DA 6 HOH B 8 508 5 HOH HOH . 
DA 6 HOH B 9 509 8 HOH HOH . 
DA 6 HOH B 10 510 32 HOH HOH . 
DA 6 HOH B 11 511 14 HOH HOH . 
DA 6 HOH B 12 512 117 HOH HOH . 
DA 6 HOH B 13 513 13 HOH HOH . 
DA 6 HOH B 14 514 47 HOH HOH . 
DA 6 HOH B 15 515 23 HOH HOH . 
DA 6 HOH B 16 516 15 HOH HOH . 
DA 6 HOH B 17 517 9 HOH HOH . 
DA 6 HOH B 18 518 106 HOH HOH . 
DA 6 HOH B 19 519 27 HOH HOH . 
DA 6 HOH B 20 520 10 HOH HOH . 
DA 6 HOH B 21 521 4 HOH HOH . 
DA 6 HOH B 22 522 19 HOH HOH . 
DA 6 HOH B 23 523 118 HOH HOH . 
DA 6 HOH B 24 524 30 HOH HOH . 
DA 6 HOH B 25 525 16 HOH HOH . 
DA 6 HOH B 26 526 17 HOH HOH . 
DA 6 HOH B 27 527 125 HOH HOH . 
DA 6 HOH B 28 528 6 HOH HOH . 
DA 6 HOH B 29 529 26 HOH HOH . 
DA 6 HOH B 30 530 18 HOH HOH . 
DA 6 HOH B 31 531 29 HOH HOH . 
DA 6 HOH B 32 532 24 HOH HOH . 
DA 6 HOH B 33 533 31 HOH HOH . 
DA 6 HOH B 34 534 55 HOH HOH . 
EA 6 HOH A 1 501 37 HOH HOH . 
EA 6 HOH A 2 502 43 HOH HOH . 
EA 6 HOH A 3 503 99 HOH HOH . 
EA 6 HOH A 4 504 108 HOH HOH . 
EA 6 HOH A 5 505 90 HOH HOH . 
EA 6 HOH A 6 506 38 HOH HOH . 
EA 6 HOH A 7 507 40 HOH HOH . 
EA 6 HOH A 8 508 102 HOH HOH . 
EA 6 HOH A 9 509 34 HOH HOH . 
EA 6 HOH A 10 510 48 HOH HOH . 
EA 6 HOH A 11 511 109 HOH HOH . 
EA 6 HOH A 12 512 36 HOH HOH . 
EA 6 HOH A 13 513 39 HOH HOH . 
EA 6 HOH A 14 514 44 HOH HOH . 
EA 6 HOH A 15 515 50 HOH HOH . 
EA 6 HOH A 16 516 124 HOH HOH . 
EA 6 HOH A 17 517 41 HOH HOH . 
EA 6 HOH A 18 518 35 HOH HOH . 
EA 6 HOH A 19 519 7 HOH HOH . 
EA 6 HOH A 20 520 51 HOH HOH . 
EA 6 HOH A 21 521 121 HOH HOH . 
EA 6 HOH A 22 522 46 HOH HOH . 
EA 6 HOH A 23 523 49 HOH HOH . 
EA 6 HOH A 24 524 42 HOH HOH . 
EA 6 HOH A 25 525 101 HOH HOH . 
EA 6 HOH A 26 526 45 HOH HOH . 
EA 6 HOH A 27 527 33 HOH HOH . 
FA 6 HOH C 1 501 77 HOH HOH . 
FA 6 HOH C 2 502 71 HOH HOH . 
FA 6 HOH C 3 503 76 HOH HOH . 
FA 6 HOH C 4 504 67 HOH HOH . 
FA 6 HOH C 5 505 83 HOH HOH . 
FA 6 HOH C 6 506 21 HOH HOH . 
FA 6 HOH C 7 507 65 HOH HOH . 
FA 6 HOH C 8 508 112 HOH HOH . 
FA 6 HOH C 9 509 107 HOH HOH . 
FA 6 HOH C 10 510 61 HOH HOH . 
FA 6 HOH C 11 511 63 HOH HOH . 
FA 6 HOH C 12 512 69 HOH HOH . 
FA 6 HOH C 13 513 66 HOH HOH . 
FA 6 HOH C 14 514 70 HOH HOH . 
FA 6 HOH C 15 515 100 HOH HOH . 
FA 6 HOH C 16 516 120 HOH HOH . 
FA 6 HOH C 17 517 103 HOH HOH . 
FA 6 HOH C 18 518 57 HOH HOH . 
FA 6 HOH C 19 519 64 HOH HOH . 
FA 6 HOH C 20 520 68 HOH HOH . 
FA 6 HOH C 21 521 81 HOH HOH . 
FA 6 HOH C 22 522 53 HOH HOH . 
FA 6 HOH C 23 523 22 HOH HOH . 
FA 6 HOH C 24 524 58 HOH HOH . 
FA 6 HOH C 25 525 104 HOH HOH . 
FA 6 HOH C 26 526 80 HOH HOH . 
FA 6 HOH C 27 527 62 HOH HOH . 
FA 6 HOH C 28 528 12 HOH HOH . 
FA 6 HOH C 29 529 59 HOH HOH . 
FA 6 HOH C 30 530 115 HOH HOH . 
FA 6 HOH C 31 531 114 HOH HOH . 
FA 6 HOH C 32 532 72 HOH HOH . 
FA 6 HOH C 33 533 56 HOH HOH . 
FA 6 HOH C 34 534 123 HOH HOH . 
FA 6 HOH C 35 535 54 HOH HOH . 
FA 6 HOH C 36 536 78 HOH HOH . 
FA 6 HOH C 37 537 84 HOH HOH . 
FA 6 HOH C 38 538 82 HOH HOH . 
FA 6 HOH C 39 539 52 HOH HOH . 
FA 6 HOH C 40 540 73 HOH HOH . 
FA 6 HOH C 41 541 79 HOH HOH . 
GA 6 HOH D 1 501 93 HOH HOH . 
GA 6 HOH D 2 502 85 HOH HOH . 
GA 6 HOH D 3 503 75 HOH HOH . 
GA 6 HOH D 4 504 95 HOH HOH . 
GA 6 HOH D 5 505 119 HOH HOH . 
GA 6 HOH D 6 506 97 HOH HOH . 
GA 6 HOH D 7 507 87 HOH HOH . 
GA 6 HOH D 8 508 111 HOH HOH . 
GA 6 HOH D 9 509 110 HOH HOH . 
GA 6 HOH D 10 510 122 HOH HOH . 
GA 6 HOH D 11 511 86 HOH HOH . 
GA 6 HOH D 12 512 88 HOH HOH . 
GA 6 HOH D 13 513 91 HOH HOH . 
GA 6 HOH D 14 514 89 HOH HOH . 
GA 6 HOH D 15 515 105 HOH HOH . 
GA 6 HOH D 16 516 116 HOH HOH . 
GA 6 HOH D 17 517 96 HOH HOH . 
GA 6 HOH D 18 518 60 HOH HOH . 
GA 6 HOH D 19 519 94 HOH HOH . 
GA 6 HOH D 20 520 113 HOH HOH . 
GA 6 HOH D 21 521 92 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . V 2 -9.869 -40.632 -44.266 1 70.26 ? C1 GOL 404 C 1 
HETATM 2 O O1 GOL . . . V 2 -10.619 -40.553 -43.058 1 64.94 ? O1 GOL 404 C 1 
HETATM 3 C C2 GOL . . . V 2 -9.714 -39.276 -44.931 1 73.56 ? C2 GOL 404 C 1 
HETATM 4 O O2 GOL . . . V 2 -8.795 -38.479 -44.175 1 76.44 ? O2 GOL 404 C 1 
HETATM 5 C C3 GOL . . . V 2 -11.027 -38.53 -45.119 1 68.01 ? C3 GOL 404 C 1 
HETATM 6 O O3 GOL . . . V 2 -11.233 -38.089 -46.464 1 63.72 ? O3 GOL 404 C 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#