data_7CF6 # _model_server_result.job_id CB2K4YFZjvErCGZJd46gOw _model_server_result.datetime_utc '2024-11-27 20:39:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cf6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":405}' # _entry.id 7CF6 # _exptl.entry_id 7CF6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 246.26 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-[[(3S)-3-azanyl-4-oxidanyl-4-oxidanylidene-butanoyl]amino]-4-methyl-pentanoic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CF6 _cell.length_a 78.609 _cell.length_b 150.425 _cell.length_c 151.996 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CF6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 17 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 P N N ? 3 W N N ? 3 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 67 B HIS 63 1_555 K ZN ZN . B ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc2 A OE1 GLU 160 B GLU 156 1_555 J ZN ZN . B ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc3 A ND1 HIS 199 B HIS 195 1_555 J ZN ZN . B ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc4 A NE2 HIS 228 B HIS 224 1_555 J ZN ZN . B ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc5 A OD1 ASP 289 B ASP 285 1_555 K ZN ZN . B ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc6 I N07 FWO . B FWO 405 1_555 K ZN ZN . B ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc7 B NE2 HIS 65 A HIS 61 1_555 R ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc8 B NE2 HIS 67 A HIS 63 1_555 R ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc9 B OE1 GLU 160 A GLU 156 1_555 Q ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc10 B OE2 GLU 160 A GLU 156 1_555 R ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc11 B ND1 HIS 199 A HIS 195 1_555 Q ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc12 C OE2 GLU 160 C GLU 156 1_555 X ZN ZN . C ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc13 C OE1 GLU 160 C GLU 156 1_555 Y ZN ZN . C ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc14 C ND1 HIS 199 C HIS 195 1_555 Y ZN ZN . C ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc15 C NE2 HIS 228 C HIS 224 1_555 Y ZN ZN . C ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc16 D NE2 HIS 67 D HIS 63 1_555 BA ZN ZN . D ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc17 D OE2 GLU 160 D GLU 156 1_555 BA ZN ZN . D ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc18 D OE1 GLU 160 D GLU 156 1_555 CA ZN ZN . D ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc19 D ND1 HIS 199 D HIS 195 1_555 CA ZN ZN . D ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc20 AA N07 FWO . D FWO 402 1_555 BA ZN ZN . D ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? # _chem_comp.formula 'C10 H18 N2 O5' _chem_comp.formula_weight 246.26 _chem_comp.id FWO _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-[[(3S)-3-azanyl-4-oxidanyl-4-oxidanylidene-butanoyl]amino]-4-methyl-pentanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C09 FWO sing 83 n n C09 C08 FWO sing 84 n n C09 C12 FWO sing 85 n n C08 C10 FWO sing 86 n n O03 C15 FWO doub 87 n n C10 N06 FWO sing 88 n n C10 C15 FWO sing 89 n n N06 C14 FWO sing 90 n n C15 O01 FWO sing 91 n n O04 C17 FWO doub 92 n n C13 C14 FWO sing 93 n n C13 C16 FWO sing 94 n n C14 O02 FWO doub 95 n n C17 O05 FWO sing 96 n n C17 C16 FWO sing 97 n n C16 N07 FWO sing 98 n n C10 H1 FWO sing 99 n n C13 H2 FWO sing 100 n n C13 H3 FWO sing 101 n n O01 H4 FWO sing 102 n n O05 H5 FWO sing 103 n n N06 H6 FWO sing 104 n n N07 H7 FWO sing 105 n n N07 H8 FWO sing 106 n n C08 H10 FWO sing 107 n n C08 H11 FWO sing 108 n n C09 H12 FWO sing 109 n n C11 H13 FWO sing 110 n n C11 H14 FWO sing 111 n n C11 H15 FWO sing 112 n n C12 H16 FWO sing 113 n n C12 H17 FWO sing 114 n n C12 H18 FWO sing 115 n n C16 H19 FWO sing 116 n n # _atom_sites.entry_id 7CF6 _atom_sites.fract_transf_matrix[1][1] 0.012721 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006648 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006579 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GOL B 1 401 401 GOL GOL . F 2 GOL B 1 402 501 GOL GOL . G 2 GOL B 1 403 601 GOL GOL . H 2 GOL B 1 404 701 GOL GOL . I 3 FWO B 1 405 801 FWO LIG . J 4 ZN B 1 406 9 ZN ZN . K 4 ZN B 1 407 10 ZN ZN . L 2 GOL A 1 401 401 GOL GOL . M 5 PEG A 1 402 501 PEG PEG . N 2 GOL A 1 403 601 GOL GOL . O 2 GOL A 1 404 701 GOL GOL . P 3 FWO A 1 405 801 FWO LIG . Q 4 ZN A 1 406 11 ZN ZN . R 4 ZN A 1 407 12 ZN ZN . S 2 GOL C 1 401 401 GOL GOL . T 5 PEG C 1 402 501 PEG PEG . U 2 GOL C 1 403 601 GOL GOL . V 2 GOL C 1 404 701 GOL GOL . W 3 FWO C 1 405 801 FWO LIG . X 4 ZN C 1 406 5 ZN ZN . Y 4 ZN C 1 407 6 ZN ZN . Z 2 GOL D 1 401 401 GOL GOL . AA 3 FWO D 1 402 501 FWO LIG . BA 4 ZN D 1 403 7 ZN ZN . CA 4 ZN D 1 404 8 ZN ZN . DA 6 HOH B 1 501 3 HOH HOH . DA 6 HOH B 2 502 11 HOH HOH . DA 6 HOH B 3 503 28 HOH HOH . DA 6 HOH B 4 504 20 HOH HOH . DA 6 HOH B 5 505 25 HOH HOH . DA 6 HOH B 6 506 1 HOH HOH . DA 6 HOH B 7 507 2 HOH HOH . DA 6 HOH B 8 508 5 HOH HOH . DA 6 HOH B 9 509 8 HOH HOH . DA 6 HOH B 10 510 32 HOH HOH . DA 6 HOH B 11 511 14 HOH HOH . DA 6 HOH B 12 512 117 HOH HOH . DA 6 HOH B 13 513 13 HOH HOH . DA 6 HOH B 14 514 47 HOH HOH . DA 6 HOH B 15 515 23 HOH HOH . DA 6 HOH B 16 516 15 HOH HOH . DA 6 HOH B 17 517 9 HOH HOH . DA 6 HOH B 18 518 106 HOH HOH . DA 6 HOH B 19 519 27 HOH HOH . DA 6 HOH B 20 520 10 HOH HOH . DA 6 HOH B 21 521 4 HOH HOH . DA 6 HOH B 22 522 19 HOH HOH . DA 6 HOH B 23 523 118 HOH HOH . DA 6 HOH B 24 524 30 HOH HOH . DA 6 HOH B 25 525 16 HOH HOH . DA 6 HOH B 26 526 17 HOH HOH . DA 6 HOH B 27 527 125 HOH HOH . DA 6 HOH B 28 528 6 HOH HOH . DA 6 HOH B 29 529 26 HOH HOH . DA 6 HOH B 30 530 18 HOH HOH . DA 6 HOH B 31 531 29 HOH HOH . DA 6 HOH B 32 532 24 HOH HOH . DA 6 HOH B 33 533 31 HOH HOH . DA 6 HOH B 34 534 55 HOH HOH . EA 6 HOH A 1 501 37 HOH HOH . EA 6 HOH A 2 502 43 HOH HOH . EA 6 HOH A 3 503 99 HOH HOH . EA 6 HOH A 4 504 108 HOH HOH . EA 6 HOH A 5 505 90 HOH HOH . EA 6 HOH A 6 506 38 HOH HOH . EA 6 HOH A 7 507 40 HOH HOH . EA 6 HOH A 8 508 102 HOH HOH . EA 6 HOH A 9 509 34 HOH HOH . EA 6 HOH A 10 510 48 HOH HOH . EA 6 HOH A 11 511 109 HOH HOH . EA 6 HOH A 12 512 36 HOH HOH . EA 6 HOH A 13 513 39 HOH HOH . EA 6 HOH A 14 514 44 HOH HOH . EA 6 HOH A 15 515 50 HOH HOH . EA 6 HOH A 16 516 124 HOH HOH . EA 6 HOH A 17 517 41 HOH HOH . EA 6 HOH A 18 518 35 HOH HOH . EA 6 HOH A 19 519 7 HOH HOH . EA 6 HOH A 20 520 51 HOH HOH . EA 6 HOH A 21 521 121 HOH HOH . EA 6 HOH A 22 522 46 HOH HOH . EA 6 HOH A 23 523 49 HOH HOH . EA 6 HOH A 24 524 42 HOH HOH . EA 6 HOH A 25 525 101 HOH HOH . EA 6 HOH A 26 526 45 HOH HOH . EA 6 HOH A 27 527 33 HOH HOH . FA 6 HOH C 1 501 77 HOH HOH . FA 6 HOH C 2 502 71 HOH HOH . FA 6 HOH C 3 503 76 HOH HOH . FA 6 HOH C 4 504 67 HOH HOH . FA 6 HOH C 5 505 83 HOH HOH . FA 6 HOH C 6 506 21 HOH HOH . FA 6 HOH C 7 507 65 HOH HOH . FA 6 HOH C 8 508 112 HOH HOH . FA 6 HOH C 9 509 107 HOH HOH . FA 6 HOH C 10 510 61 HOH HOH . FA 6 HOH C 11 511 63 HOH HOH . FA 6 HOH C 12 512 69 HOH HOH . FA 6 HOH C 13 513 66 HOH HOH . FA 6 HOH C 14 514 70 HOH HOH . FA 6 HOH C 15 515 100 HOH HOH . FA 6 HOH C 16 516 120 HOH HOH . FA 6 HOH C 17 517 103 HOH HOH . FA 6 HOH C 18 518 57 HOH HOH . FA 6 HOH C 19 519 64 HOH HOH . FA 6 HOH C 20 520 68 HOH HOH . FA 6 HOH C 21 521 81 HOH HOH . FA 6 HOH C 22 522 53 HOH HOH . FA 6 HOH C 23 523 22 HOH HOH . FA 6 HOH C 24 524 58 HOH HOH . FA 6 HOH C 25 525 104 HOH HOH . FA 6 HOH C 26 526 80 HOH HOH . FA 6 HOH C 27 527 62 HOH HOH . FA 6 HOH C 28 528 12 HOH HOH . FA 6 HOH C 29 529 59 HOH HOH . FA 6 HOH C 30 530 115 HOH HOH . FA 6 HOH C 31 531 114 HOH HOH . FA 6 HOH C 32 532 72 HOH HOH . FA 6 HOH C 33 533 56 HOH HOH . FA 6 HOH C 34 534 123 HOH HOH . FA 6 HOH C 35 535 54 HOH HOH . FA 6 HOH C 36 536 78 HOH HOH . FA 6 HOH C 37 537 84 HOH HOH . FA 6 HOH C 38 538 82 HOH HOH . FA 6 HOH C 39 539 52 HOH HOH . FA 6 HOH C 40 540 73 HOH HOH . FA 6 HOH C 41 541 79 HOH HOH . GA 6 HOH D 1 501 93 HOH HOH . GA 6 HOH D 2 502 85 HOH HOH . GA 6 HOH D 3 503 75 HOH HOH . GA 6 HOH D 4 504 95 HOH HOH . GA 6 HOH D 5 505 119 HOH HOH . GA 6 HOH D 6 506 97 HOH HOH . GA 6 HOH D 7 507 87 HOH HOH . GA 6 HOH D 8 508 111 HOH HOH . GA 6 HOH D 9 509 110 HOH HOH . GA 6 HOH D 10 510 122 HOH HOH . GA 6 HOH D 11 511 86 HOH HOH . GA 6 HOH D 12 512 88 HOH HOH . GA 6 HOH D 13 513 91 HOH HOH . GA 6 HOH D 14 514 89 HOH HOH . GA 6 HOH D 15 515 105 HOH HOH . GA 6 HOH D 16 516 116 HOH HOH . GA 6 HOH D 17 517 96 HOH HOH . GA 6 HOH D 18 518 60 HOH HOH . GA 6 HOH D 19 519 94 HOH HOH . GA 6 HOH D 20 520 113 HOH HOH . GA 6 HOH D 21 521 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 FWO . . . P 3 22.532 -18.481 -62.899 1 106.53 ? C10 FWO 405 A 1 HETATM 2 C C13 FWO . . . P 3 18.769 -17.555 -62.123 1 83.02 ? C13 FWO 405 A 1 HETATM 3 C C15 FWO . . . P 3 23.578 -17.359 -62.843 1 107.65 ? C15 FWO 405 A 1 HETATM 4 C C17 FWO . . . P 3 16.332 -17.865 -61.409 1 64.12 ? C17 FWO 405 A 1 HETATM 5 O O01 FWO . . . P 3 24.536 -17.414 -61.98 1 116.07 -1 O01 FWO 405 A 1 HETATM 6 O O02 FWO . . . P 3 20.186 -19.206 -61.17 1 85.87 ? O02 FWO 405 A 1 HETATM 7 O O03 FWO . . . P 3 23.493 -16.394 -63.675 1 80.76 ? O03 FWO 405 A 1 HETATM 8 O O04 FWO . . . P 3 16.014 -18.84 -62.156 1 51.22 -1 O04 FWO 405 A 1 HETATM 9 O O05 FWO . . . P 3 15.416 -17.042 -61.079 1 49.67 ? O05 FWO 405 A 1 HETATM 10 N N06 FWO . . . P 3 21.181 -17.899 -62.852 1 95.88 ? N06 FWO 405 A 1 HETATM 11 N N07 FWO . . . P 3 18.275 -18.693 -59.973 1 80.88 ? N07 FWO 405 A 1 HETATM 12 C C08 FWO . . . P 3 22.716 -19.248 -64.221 1 114.68 ? C08 FWO 405 A 1 HETATM 13 C C09 FWO . . . P 3 24.162 -19.387 -64.746 1 114.73 ? C09 FWO 405 A 1 HETATM 14 C C11 FWO . . . P 3 24.212 -19.357 -66.283 1 106.57 ? C11 FWO 405 A 1 HETATM 15 C C12 FWO . . . P 3 24.737 -20.705 -64.203 1 119.4 ? C12 FWO 405 A 1 HETATM 16 C C14 FWO . . . P 3 20.089 -18.32 -61.969 1 86.46 ? C14 FWO 405 A 1 HETATM 17 C C16 FWO . . . P 3 17.808 -17.662 -60.915 1 79.8 ? C16 FWO 405 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 17 #