data_7CFI # _model_server_result.job_id dMc6UR2dGwRwnVS2or-KXw _model_server_result.datetime_utc '2024-11-04 23:25:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cfi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7CFI # _exptl.entry_id 7CFI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CFI _cell.length_a 61.89 _cell.length_b 87.3 _cell.length_c 201.97 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CFI _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 14_455 -x-1/2,-y+1/2,z -1 0 0 0 -1 0 0 0 1 -30.945 43.65 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 76 A CYS 282 1_555 A SG CYS 76 A CYS 282 14_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 A OE2 GLU 132 A GLU 338 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc2 A OE2 GLU 136 A GLU 342 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc3 A O ILE 142 A ILE 348 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? metalc ? metalc4 B O2G ATP . A ATP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc5 B O1B ATP . A ATP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc6 B O1A ATP . A ATP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.985 ? metalc ? metalc7 D MG MG . A MG 403 1_555 E O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc8 D MG MG . A MG 403 1_555 E O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7CFI _atom_sites.fract_transf_matrix[1][1] 0.016158 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011455 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 401 1 ATP ATP . C 3 MG A 1 402 2 MG MG . D 3 MG A 1 403 1 MG MO6 . E 4 HOH A 1 501 1 HOH MO6 . E 4 HOH A 2 502 1 HOH HOH . E 4 HOH A 3 503 6 HOH HOH . E 4 HOH A 4 504 3 HOH HOH . E 4 HOH A 5 505 2 HOH HOH . E 4 HOH A 6 506 5 HOH HOH . E 4 HOH A 7 507 7 HOH HOH . E 4 HOH A 8 508 1 HOH MO6 . E 4 HOH A 9 509 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 -15.433 18.849 -20.261 1 61.71 ? PG ATP 401 A 1 HETATM 2 O O1G ATP . . . B 2 -14.878 18.99 -18.87 1 59.02 ? O1G ATP 401 A 1 HETATM 3 O O2G ATP . . . B 2 -14.391 18.471 -21.293 1 63.29 ? O2G ATP 401 A 1 HETATM 4 O O3G ATP . . . B 2 -16.307 19.983 -20.716 1 64.37 ? O3G ATP 401 A 1 HETATM 5 P PB ATP . . . B 2 -16.032 16.031 -20.154 1 55.34 ? PB ATP 401 A 1 HETATM 6 O O1B ATP . . . B 2 -14.607 15.818 -20.555 1 64.58 ? O1B ATP 401 A 1 HETATM 7 O O2B ATP . . . B 2 -16.515 15.456 -18.832 1 64.01 ? O2B ATP 401 A 1 HETATM 8 O O3B ATP . . . B 2 -16.454 17.589 -20.231 1 74.98 ? O3B ATP 401 A 1 HETATM 9 P PA ATP . . . B 2 -16.801 15.738 -22.856 1 66.71 ? PA ATP 401 A 1 HETATM 10 O O1A ATP . . . B 2 -15.407 16.284 -23.09 1 71.54 ? O1A ATP 401 A 1 HETATM 11 O O2A ATP . . . B 2 -17.975 16.533 -23.348 1 62.3 ? O2A ATP 401 A 1 HETATM 12 O O3A ATP . . . B 2 -16.998 15.417 -21.287 1 63.85 ? O3A ATP 401 A 1 HETATM 13 O O5' ATP . . . B 2 -16.878 14.254 -23.468 1 62.84 ? O5' ATP 401 A 1 HETATM 14 C C5' ATP . . . B 2 -15.744 13.408 -23.571 1 62.36 ? C5' ATP 401 A 1 HETATM 15 C C4' ATP . . . B 2 -16.233 12.005 -23.922 1 69.72 ? C4' ATP 401 A 1 HETATM 16 O O4' ATP . . . B 2 -16.765 11.361 -22.762 1 60.4 ? O4' ATP 401 A 1 HETATM 17 C C3' ATP . . . B 2 -17.354 12.074 -24.944 1 70.47 ? C3' ATP 401 A 1 HETATM 18 O O3' ATP . . . B 2 -17.17 11.019 -25.889 1 63.59 ? O3' ATP 401 A 1 HETATM 19 C C2' ATP . . . B 2 -18.626 11.812 -24.158 1 62.53 ? C2' ATP 401 A 1 HETATM 20 O O2' ATP . . . B 2 -19.574 11.075 -24.933 1 66.9 ? O2' ATP 401 A 1 HETATM 21 C C1' ATP . . . B 2 -18.14 11.017 -22.962 1 56.67 ? C1' ATP 401 A 1 HETATM 22 N N9 ATP . . . B 2 -18.915 11.375 -21.751 1 60.32 ? N9 ATP 401 A 1 HETATM 23 C C8 ATP . . . B 2 -19.254 12.62 -21.365 1 62.49 ? C8 ATP 401 A 1 HETATM 24 N N7 ATP . . . B 2 -19.965 12.594 -20.213 1 58.56 ? N7 ATP 401 A 1 HETATM 25 C C5 ATP . . . B 2 -20.091 11.307 -19.847 1 64.22 ? C5 ATP 401 A 1 HETATM 26 C C6 ATP . . . B 2 -20.724 10.573 -18.73 1 58.99 ? C6 ATP 401 A 1 HETATM 27 N N6 ATP . . . B 2 -21.381 11.233 -17.75 1 51.08 ? N6 ATP 401 A 1 HETATM 28 N N1 ATP . . . B 2 -20.625 9.224 -18.724 1 59.13 ? N1 ATP 401 A 1 HETATM 29 C C2 ATP . . . B 2 -19.973 8.553 -19.698 1 55.01 ? C2 ATP 401 A 1 HETATM 30 N N3 ATP . . . B 2 -19.373 9.158 -20.741 1 62.06 ? N3 ATP 401 A 1 HETATM 31 C C4 ATP . . . B 2 -19.404 10.505 -20.869 1 62.59 ? C4 ATP 401 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #