data_7CFO
#
_model_server_result.job_id            5rnDIUKY4BcEG1i-K9lO8A 
_model_server_result.datetime_utc      '2024-12-04 23:55:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7cfo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":500}' 
#
_entry.id    7CFO 
#
_exptl.entry_id    7CFO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              504.541 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1-[3-(2-ethoxyethoxy)-5,5,8,8-tetramethyl-6,7-dihydronaphthalen-2-yl]-2-(trifluoromethyl)benzimidazole-5-carboxylic acid' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.31 
_cell.angle_gamma         90 
_cell.entry_id            7CFO 
_cell.length_a            50.757 
_cell.length_b            99.432 
_cell.length_c            93.598 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7CFO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 50 A CYS 269 1_555 C SG CYS 50 C CYS 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf2 B SG CYS 50 B CYS 269 1_555 D SG CYS 50 D CYS 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
#
_chem_comp.formula           'C27 H31 F3 N2 O4' 
_chem_comp.formula_weight    504.541 
_chem_comp.id                WZ6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1-[3-(2-ethoxyethoxy)-5,5,8,8-tetramethyl-6,7-dihydronaphthalen-2-yl]-2-(trifluoromethyl)benzimidazole-5-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F C8 WZ6 sing 389 n n 
O C7 WZ6 doub 390 n n 
N1 C2 WZ6 sing 391 n y 
N1 C WZ6 doub 392 n y 
C3 C2 WZ6 doub 393 n y 
C3 C4 WZ6 sing 394 n y 
C8 F2 WZ6 sing 395 n n 
C8 C WZ6 sing 396 n n 
C8 F1 WZ6 sing 397 n n 
C2 C1 WZ6 sing 398 n y 
C N WZ6 sing 399 n y 
C7 C4 WZ6 sing 400 n n 
C7 O1 WZ6 sing 401 n n 
C4 C5 WZ6 doub 402 n y 
N C1 WZ6 sing 403 n y 
N C10 WZ6 sing 404 n n 
C1 C6 WZ6 doub 405 n y 
C26 C25 WZ6 sing 406 n n 
C19 C17 WZ6 sing 407 n n 
C5 C6 WZ6 sing 408 n y 
C9 C10 WZ6 sing 409 n y 
C9 C18 WZ6 doub 410 n y 
C10 C11 WZ6 doub 411 n y 
C25 O3 WZ6 sing 412 n n 
C17 C18 WZ6 sing 413 n n 
C17 C20 WZ6 sing 414 n n 
C17 C16 WZ6 sing 415 n n 
C18 C13 WZ6 sing 416 n y 
C23 O2 WZ6 sing 417 n n 
C23 C24 WZ6 sing 418 n n 
O3 C24 WZ6 sing 419 n n 
C11 O2 WZ6 sing 420 n n 
C11 C12 WZ6 sing 421 n y 
C16 C15 WZ6 sing 422 n n 
C13 C12 WZ6 doub 423 n y 
C13 C14 WZ6 sing 424 n n 
C22 C14 WZ6 sing 425 n n 
C14 C15 WZ6 sing 426 n n 
C14 C21 WZ6 sing 427 n n 
C3 H1 WZ6 sing 428 n n 
O1 H2 WZ6 sing 429 n n 
C5 H3 WZ6 sing 430 n n 
C6 H4 WZ6 sing 431 n n 
C23 H5 WZ6 sing 432 n n 
C23 H6 WZ6 sing 433 n n 
C24 H7 WZ6 sing 434 n n 
C24 H8 WZ6 sing 435 n n 
C25 H9 WZ6 sing 436 n n 
C25 H10 WZ6 sing 437 n n 
C26 H11 WZ6 sing 438 n n 
C26 H12 WZ6 sing 439 n n 
C26 H13 WZ6 sing 440 n n 
C12 H14 WZ6 sing 441 n n 
C21 H15 WZ6 sing 442 n n 
C21 H16 WZ6 sing 443 n n 
C21 H17 WZ6 sing 444 n n 
C22 H18 WZ6 sing 445 n n 
C22 H19 WZ6 sing 446 n n 
C22 H20 WZ6 sing 447 n n 
C15 H21 WZ6 sing 448 n n 
C15 H22 WZ6 sing 449 n n 
C16 H23 WZ6 sing 450 n n 
C16 H24 WZ6 sing 451 n n 
C20 H25 WZ6 sing 452 n n 
C20 H26 WZ6 sing 453 n n 
C20 H27 WZ6 sing 454 n n 
C19 H28 WZ6 sing 455 n n 
C19 H29 WZ6 sing 456 n n 
C19 H30 WZ6 sing 457 n n 
C9 H31 WZ6 sing 458 n n 
#
_atom_sites.entry_id                     7CFO 
_atom_sites.fract_transf_matrix[1][1]    0.019702 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002877 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010057 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010797 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 WZ6 A 1 500 3 WZ6 WZ6 . 
F 2 WZ6 B 1 500 1 WZ6 WZ6 . 
G 3 GOL B 1 501 2 GOL GOL . 
H 2 WZ6 C 1 500 2 WZ6 WZ6 . 
I 3 GOL C 1 501 1 GOL GOL . 
J 4 HOH A 1 600 9 HOH HOH . 
J 4 HOH A 2 601 4 HOH HOH . 
J 4 HOH A 3 602 2 HOH HOH . 
J 4 HOH A 4 603 98 HOH HOH . 
J 4 HOH A 5 604 274 HOH HOH . 
J 4 HOH A 6 605 142 HOH HOH . 
J 4 HOH A 7 606 128 HOH HOH . 
J 4 HOH A 8 607 3 HOH HOH . 
J 4 HOH A 9 608 7 HOH HOH . 
J 4 HOH A 10 609 70 HOH HOH . 
J 4 HOH A 11 610 34 HOH HOH . 
J 4 HOH A 12 611 97 HOH HOH . 
J 4 HOH A 13 612 126 HOH HOH . 
J 4 HOH A 14 613 19 HOH HOH . 
J 4 HOH A 15 614 11 HOH HOH . 
J 4 HOH A 16 615 234 HOH HOH . 
J 4 HOH A 17 616 99 HOH HOH . 
J 4 HOH A 18 617 151 HOH HOH . 
J 4 HOH A 19 618 194 HOH HOH . 
J 4 HOH A 20 619 315 HOH HOH . 
J 4 HOH A 21 620 324 HOH HOH . 
K 4 HOH B 1 600 8 HOH HOH . 
K 4 HOH B 2 601 28 HOH HOH . 
K 4 HOH B 3 602 50 HOH HOH . 
K 4 HOH B 4 603 55 HOH HOH . 
K 4 HOH B 5 604 88 HOH HOH . 
K 4 HOH B 6 605 155 HOH HOH . 
K 4 HOH B 7 606 207 HOH HOH . 
K 4 HOH B 8 607 225 HOH HOH . 
K 4 HOH B 9 608 223 HOH HOH . 
K 4 HOH B 10 609 130 HOH HOH . 
K 4 HOH B 11 610 56 HOH HOH . 
K 4 HOH B 12 611 76 HOH HOH . 
K 4 HOH B 13 612 117 HOH HOH . 
K 4 HOH B 14 613 5 HOH HOH . 
K 4 HOH B 15 614 153 HOH HOH . 
K 4 HOH B 16 615 57 HOH HOH . 
K 4 HOH B 17 616 172 HOH HOH . 
K 4 HOH B 18 617 15 HOH HOH . 
K 4 HOH B 19 618 12 HOH HOH . 
K 4 HOH B 20 619 14 HOH HOH . 
K 4 HOH B 21 620 81 HOH HOH . 
K 4 HOH B 22 621 96 HOH HOH . 
K 4 HOH B 23 622 62 HOH HOH . 
K 4 HOH B 24 623 188 HOH HOH . 
K 4 HOH B 25 624 102 HOH HOH . 
K 4 HOH B 26 625 176 HOH HOH . 
K 4 HOH B 27 626 64 HOH HOH . 
K 4 HOH B 28 627 184 HOH HOH . 
K 4 HOH B 29 628 158 HOH HOH . 
K 4 HOH B 30 629 317 HOH HOH . 
K 4 HOH B 31 630 313 HOH HOH . 
L 4 HOH C 1 600 178 HOH HOH . 
L 4 HOH C 2 601 20 HOH HOH . 
L 4 HOH C 3 602 127 HOH HOH . 
L 4 HOH C 4 603 1 HOH HOH . 
L 4 HOH C 5 604 13 HOH HOH . 
L 4 HOH C 6 605 100 HOH HOH . 
L 4 HOH C 7 606 6 HOH HOH . 
L 4 HOH C 8 607 23 HOH HOH . 
L 4 HOH C 9 608 51 HOH HOH . 
L 4 HOH C 10 609 83 HOH HOH . 
L 4 HOH C 11 610 39 HOH HOH . 
L 4 HOH C 12 611 54 HOH HOH . 
L 4 HOH C 13 612 140 HOH HOH . 
L 4 HOH C 14 613 72 HOH HOH . 
L 4 HOH C 15 614 93 HOH HOH . 
L 4 HOH C 16 615 69 HOH HOH . 
L 4 HOH C 17 616 131 HOH HOH . 
L 4 HOH C 18 617 112 HOH HOH . 
L 4 HOH C 19 618 173 HOH HOH . 
L 4 HOH C 20 619 209 HOH HOH . 
L 4 HOH C 21 620 47 HOH HOH . 
L 4 HOH C 22 621 318 HOH HOH . 
L 4 HOH C 23 622 185 HOH HOH . 
L 4 HOH C 24 623 316 HOH HOH . 
M 4 HOH D 1 600 118 HOH HOH . 
M 4 HOH D 2 601 41 HOH HOH . 
M 4 HOH D 3 602 18 HOH HOH . 
M 4 HOH D 4 603 95 HOH HOH . 
M 4 HOH D 5 604 103 HOH HOH . 
M 4 HOH D 6 605 157 HOH HOH . 
M 4 HOH D 7 606 121 HOH HOH . 
M 4 HOH D 8 607 40 HOH HOH . 
M 4 HOH D 9 608 17 HOH HOH . 
M 4 HOH D 10 609 35 HOH HOH . 
M 4 HOH D 11 610 89 HOH HOH . 
M 4 HOH D 12 611 104 HOH HOH . 
M 4 HOH D 13 612 43 HOH HOH . 
M 4 HOH D 14 613 114 HOH HOH . 
M 4 HOH D 15 614 133 HOH HOH . 
M 4 HOH D 16 615 60 HOH HOH . 
M 4 HOH D 17 616 160 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 F F2 WZ6 . . . F 2 -0.748 32.917 31.051 1 65.16 ? F2 WZ6 500 B 1 
HETATM 2 C C8 WZ6 . . . F 2 -0.993 31.648 30.761 1 62.42 ? C8 WZ6 500 B 1 
HETATM 3 F F WZ6 . . . F 2 -1.295 31.867 29.519 1 59.99 ? F WZ6 500 B 1 
HETATM 4 F F1 WZ6 . . . F 2 -1.956 31.644 31.61 1 58.53 ? F1 WZ6 500 B 1 
HETATM 5 C C WZ6 . . . F 2 0.281 30.94 31.156 1 70.26 ? C WZ6 500 B 1 
HETATM 6 N N1 WZ6 . . . F 2 0.588 29.812 30.442 1 70.66 ? N1 WZ6 500 B 1 
HETATM 7 C C2 WZ6 . . . F 2 1.739 29.337 31.03 1 80.2 ? C2 WZ6 500 B 1 
HETATM 8 C C3 WZ6 . . . F 2 2.56 28.252 30.756 1 72.53 ? C3 WZ6 500 B 1 
HETATM 9 C C4 WZ6 . . . F 2 3.694 28.022 31.564 1 74.56 ? C4 WZ6 500 B 1 
HETATM 10 C C7 WZ6 . . . F 2 4.544 26.813 31.237 1 67.26 ? C7 WZ6 500 B 1 
HETATM 11 O O1 WZ6 . . . F 2 5.618 26.494 31.928 1 64.69 ? O1 WZ6 500 B 1 
HETATM 12 O O WZ6 . . . F 2 4.242 26.113 30.308 1 59.29 ? O WZ6 500 B 1 
HETATM 13 C C5 WZ6 . . . F 2 4.032 28.852 32.651 1 69.18 ? C5 WZ6 500 B 1 
HETATM 14 C C6 WZ6 . . . F 2 3.249 29.958 32.982 1 71.29 ? C6 WZ6 500 B 1 
HETATM 15 C C1 WZ6 . . . F 2 2.115 30.231 32.198 1 78.44 ? C1 WZ6 500 B 1 
HETATM 16 N N WZ6 . . . F 2 1.157 31.17 32.197 1 76.8 ? N WZ6 500 B 1 
HETATM 17 C C10 WZ6 . . . F 2 1.18 32.14 33.15 1 77.37 ? C10 WZ6 500 B 1 
HETATM 18 C C11 WZ6 . . . F 2 0.466 31.99 34.461 1 76.46 ? C11 WZ6 500 B 1 
HETATM 19 O O2 WZ6 . . . F 2 -0.315 30.897 34.756 1 79.12 ? O2 WZ6 500 B 1 
HETATM 20 C C23 WZ6 . . . F 2 -1.615 30.887 34.11 1 81.46 ? C23 WZ6 500 B 1 
HETATM 21 C C24 WZ6 . . . F 2 -2.914 30.799 34.949 1 80.7 ? C24 WZ6 500 B 1 
HETATM 22 O O3 WZ6 . . . F 2 -4.093 31.32 34.242 1 79.97 ? O3 WZ6 500 B 1 
HETATM 23 C C25 WZ6 . . . F 2 -4.696 30.533 33.179 1 78.3 ? C25 WZ6 500 B 1 
HETATM 24 C C26 WZ6 . . . F 2 -5.898 31.167 32.481 1 74.62 ? C26 WZ6 500 B 1 
HETATM 25 C C12 WZ6 . . . F 2 0.474 32.986 35.416 1 74.72 ? C12 WZ6 500 B 1 
HETATM 26 C C13 WZ6 . . . F 2 1.168 34.169 35.246 1 72.7 ? C13 WZ6 500 B 1 
HETATM 27 C C14 WZ6 . . . F 2 1.189 35.192 36.347 1 75.64 ? C14 WZ6 500 B 1 
HETATM 28 C C21 WZ6 . . . F 2 0.153 35.211 37.453 1 80.97 ? C21 WZ6 500 B 1 
HETATM 29 C C22 WZ6 . . . F 2 0.216 36.143 35.551 1 77.41 ? C22 WZ6 500 B 1 
HETATM 30 C C15 WZ6 . . . F 2 2.384 36.132 36.406 1 74.45 ? C15 WZ6 500 B 1 
HETATM 31 C C16 WZ6 . . . F 2 3.003 36.581 35.081 1 68.33 ? C16 WZ6 500 B 1 
HETATM 32 C C17 WZ6 . . . F 2 2.661 35.691 33.871 1 76.39 ? C17 WZ6 500 B 1 
HETATM 33 C C20 WZ6 . . . F 2 3.97 34.899 34.119 1 74.27 ? C20 WZ6 500 B 1 
HETATM 34 C C19 WZ6 . . . F 2 3.093 36.196 32.488 1 66.27 ? C19 WZ6 500 B 1 
HETATM 35 C C18 WZ6 . . . F 2 1.935 34.355 34.009 1 75.17 ? C18 WZ6 500 B 1 
HETATM 36 C C9 WZ6 . . . F 2 1.893 33.345 33.016 1 76.49 ? C9 WZ6 500 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           36 
#