data_7CFS # _model_server_result.job_id hNSu8uDXR0JfCEIwdiMRgQ _model_server_result.datetime_utc '2024-11-21 13:42:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cfs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":603}' # _entry.id 7CFS # _exptl.entry_id 7CFS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CFS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CFS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 J N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 102 A CYS 93 1_555 A SG CYS 203 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 181 A CYS 172 1_555 A SG CYS 188 A CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 299 A CYS 290 1_555 A SG CYS 376 A CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 A SG CYS 319 A CYS 310 1_555 A SG CYS 372 A CYS 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 A SG CYS 323 A CYS 314 1_555 A SG CYS 370 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? disulf ? disulf6 A SG CYS 332 A CYS 323 1_555 A SG CYS 354 A CYS 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 A SG CYS 334 A CYS 325 1_555 A SG CYS 346 A CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 B SG CYS 102 B CYS 93 1_555 B SG CYS 203 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 B SG CYS 181 B CYS 172 1_555 B SG CYS 188 B CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf10 B SG CYS 299 B CYS 290 1_555 B SG CYS 376 B CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf11 B SG CYS 319 B CYS 310 1_555 B SG CYS 372 B CYS 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf12 B SG CYS 323 B CYS 314 1_555 B SG CYS 370 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? disulf ? disulf13 B SG CYS 332 B CYS 323 1_555 B SG CYS 354 B CYS 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf14 B SG CYS 334 B CYS 325 1_555 B SG CYS 346 B CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf15 C SG CYS 102 C CYS 93 1_555 C SG CYS 203 C CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf16 C SG CYS 181 C CYS 172 1_555 C SG CYS 188 C CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf17 C SG CYS 299 C CYS 290 1_555 C SG CYS 376 C CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf18 C SG CYS 319 C CYS 310 1_555 C SG CYS 372 C CYS 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf19 C SG CYS 323 C CYS 314 1_555 C SG CYS 370 C CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? disulf ? disulf20 C SG CYS 332 C CYS 323 1_555 C SG CYS 354 C CYS 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf21 C SG CYS 334 C CYS 325 1_555 C SG CYS 346 C CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 377 A ASN 368 1_555 E C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 404 A ASN 395 1_555 D C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 B ND2 ASN 377 B ASN 368 1_555 I C1 NAG . B NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 B ND2 ASN 404 B ASN 395 1_555 H C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale5 C ND2 ASN 377 C ASN 368 1_555 L C1 NAG . C NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 C ND2 ASN 404 C ASN 395 1_555 K C1 NAG . C NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? metalc ? metalc1 A OD1 ASP 443 A ASP 434 1_555 G NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc2 A OD2 ASP 443 A ASP 434 1_555 G NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? metalc ? metalc3 G NA NA . A NA 604 1_555 B OD1 ASP 443 B ASP 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc4 G NA NA . A NA 604 1_555 B OD2 ASP 443 B ASP 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc5 G NA NA . A NA 604 1_555 C OD1 ASP 443 C ASP 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc6 G NA NA . A NA 604 1_555 C OD2 ASP 443 C ASP 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 404 n n CBA CAB Y01 sing 405 n n CBA CAN Y01 sing 406 n n CAN CAJ Y01 sing 407 n n CAJ CAO Y01 sing 408 n n CAO CBB Y01 sing 409 n n CBB CAC Y01 sing 410 n n CBB CBE Y01 sing 411 n n CBE CAP Y01 sing 412 n n CBE CBI Y01 sing 413 n n CAP CAQ Y01 sing 414 n n CAQ CBG Y01 sing 415 n n CBG CBI Y01 sing 416 n n CBG CBD Y01 sing 417 n n CBI CAE Y01 sing 418 n n CBI CAU Y01 sing 419 n n CAU CAS Y01 sing 420 n n CAS CBF Y01 sing 421 n n CBF CBD Y01 sing 422 n n CBF CBH Y01 sing 423 n n CBD CAK Y01 sing 424 n n CAK CAI Y01 sing 425 n n CAI CAZ Y01 doub 426 n n CAZ CAV Y01 sing 427 n n CAZ CBH Y01 sing 428 n n CAV CBC Y01 sing 429 n n CBH CAD Y01 sing 430 n n CBH CAT Y01 sing 431 n n CAT CAR Y01 sing 432 n n CAR CBC Y01 sing 433 n n CBC OAW Y01 sing 434 n n OAW CAY Y01 sing 435 n n CAY OAG Y01 doub 436 n n CAY CAM Y01 sing 437 n n CAM CAL Y01 sing 438 n n CAL CAX Y01 sing 439 n n CAX OAH Y01 sing 440 n n CAX OAF Y01 doub 441 n n CAA HAA1 Y01 sing 442 n n CAA HAA2 Y01 sing 443 n n CAA HAA3 Y01 sing 444 n n CBA HBA Y01 sing 445 n n CAB HAB1 Y01 sing 446 n n CAB HAB2 Y01 sing 447 n n CAB HAB3 Y01 sing 448 n n CAN HAN1 Y01 sing 449 n n CAN HAN2 Y01 sing 450 n n CAJ HAJ1 Y01 sing 451 n n CAJ HAJ2 Y01 sing 452 n n CAO HAO1 Y01 sing 453 n n CAO HAO2 Y01 sing 454 n n CBB HBB Y01 sing 455 n n CAC HAC1 Y01 sing 456 n n CAC HAC2 Y01 sing 457 n n CAC HAC3 Y01 sing 458 n n CBE HBE Y01 sing 459 n n CAP HAP1 Y01 sing 460 n n CAP HAP2 Y01 sing 461 n n CAQ HAQ1 Y01 sing 462 n n CAQ HAQ2 Y01 sing 463 n n CBG HBG Y01 sing 464 n n CBD HBD Y01 sing 465 n n CAE HAE1 Y01 sing 466 n n CAE HAE2 Y01 sing 467 n n CAE HAE3 Y01 sing 468 n n CAU HAU1 Y01 sing 469 n n CAU HAU2 Y01 sing 470 n n CAS HAS1 Y01 sing 471 n n CAS HAS2 Y01 sing 472 n n CBF HBF Y01 sing 473 n n CAK HAK1 Y01 sing 474 n n CAK HAK2 Y01 sing 475 n n CAI HAI Y01 sing 476 n n CAV HAV1 Y01 sing 477 n n CAV HAV2 Y01 sing 478 n n CBC HBC Y01 sing 479 n n CAD HAD1 Y01 sing 480 n n CAD HAD2 Y01 sing 481 n n CAD HAD3 Y01 sing 482 n n CAT HAT1 Y01 sing 483 n n CAT HAT2 Y01 sing 484 n n CAR HAR1 Y01 sing 485 n n CAR HAR2 Y01 sing 486 n n CAM HAM1 Y01 sing 487 n n CAM HAM2 Y01 sing 488 n n CAL HAL1 Y01 sing 489 n n CAL HAL2 Y01 sing 490 n n OAH HAH Y01 sing 491 n n # _atom_sites.entry_id 7CFS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NAG A 1 601 601 NAG NAG . E 2 NAG A 1 602 602 NAG NAG . F 3 Y01 A 1 603 603 Y01 Y01 . G 4 NA A 1 604 604 NA NA . H 2 NAG B 1 601 601 NAG NAG . I 2 NAG B 1 602 602 NAG NAG . J 3 Y01 B 1 603 603 Y01 Y01 . K 2 NAG C 1 601 601 NAG NAG . L 2 NAG C 1 602 602 NAG NAG . M 3 Y01 C 1 603 603 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . J 3 112.43 104.779 72.045 1 45.55 ? CAA Y01 603 B 1 HETATM 2 C CBA Y01 . . . J 3 113.817 105.436 72.157 1 44.09 ? CBA Y01 603 B 1 HETATM 3 C CAB Y01 . . . J 3 114.739 105.022 70.993 1 46.32 ? CAB Y01 603 B 1 HETATM 4 C CAN Y01 . . . J 3 114.503 105.198 73.519 1 43.39 ? CAN Y01 603 B 1 HETATM 5 C CAJ Y01 . . . J 3 113.789 104.2 74.464 1 38.06 ? CAJ Y01 603 B 1 HETATM 6 C CAO Y01 . . . J 3 114.814 103.366 75.236 1 30 ? CAO Y01 603 B 1 HETATM 7 C CBB Y01 . . . J 3 114.214 102.688 76.465 1 31.43 ? CBB Y01 603 B 1 HETATM 8 C CAC Y01 . . . J 3 113.605 101.325 76.069 1 35.86 ? CAC Y01 603 B 1 HETATM 9 C CBE Y01 . . . J 3 115.282 102.627 77.602 1 31.16 ? CBE Y01 603 B 1 HETATM 10 C CAP Y01 . . . J 3 115.493 104.054 78.156 1 31.72 ? CAP Y01 603 B 1 HETATM 11 C CAQ Y01 . . . J 3 115.728 103.874 79.661 1 30.79 ? CAQ Y01 603 B 1 HETATM 12 C CBG Y01 . . . J 3 116.101 102.404 79.754 1 27.87 ? CBG Y01 603 B 1 HETATM 13 C CBI Y01 . . . J 3 115.003 101.785 78.895 1 32.34 ? CBI Y01 603 B 1 HETATM 14 C CAE Y01 . . . J 3 113.579 101.993 79.489 1 31.91 ? CAE Y01 603 B 1 HETATM 15 C CAU Y01 . . . J 3 115.323 100.273 78.766 1 34.11 ? CAU Y01 603 B 1 HETATM 16 C CAS Y01 . . . J 3 115.495 99.566 80.147 1 35 ? CAS Y01 603 B 1 HETATM 17 C CBF Y01 . . . J 3 116.467 100.302 81.124 1 33.09 ? CBF Y01 603 B 1 HETATM 18 C CBD Y01 . . . J 3 116.162 101.815 81.173 1 29.25 ? CBD Y01 603 B 1 HETATM 19 C CAK Y01 . . . J 3 117.18 102.581 82.017 1 32.64 ? CAK Y01 603 B 1 HETATM 20 C CAI Y01 . . . J 3 117.562 101.929 83.179 1 31.15 ? CAI Y01 603 B 1 HETATM 21 C CAZ Y01 . . . J 3 117.315 100.612 83.508 1 34.62 ? CAZ Y01 603 B 1 HETATM 22 C CAV Y01 . . . J 3 117.877 100.139 84.848 1 39.32 ? CAV Y01 603 B 1 HETATM 23 C CBH Y01 . . . J 3 116.525 99.675 82.551 1 35.33 ? CBH Y01 603 B 1 HETATM 24 C CAD Y01 . . . J 3 115.117 99.463 83.138 1 34.48 ? CAD Y01 603 B 1 HETATM 25 C CAT Y01 . . . J 3 117.266 98.315 82.499 1 40.87 ? CAT Y01 603 B 1 HETATM 26 C CAR Y01 . . . J 3 117.6 97.752 83.901 1 45.09 ? CAR Y01 603 B 1 HETATM 27 C CBC Y01 . . . J 3 118.47 98.741 84.736 1 49.17 ? CBC Y01 603 B 1 HETATM 28 O OAW Y01 . . . J 3 118.628 98.398 86.122 1 62.43 ? OAW Y01 603 B 1 HETATM 29 C CAY Y01 . . . J 3 119.085 97.134 86.365 1 72.8 ? CAY Y01 603 B 1 HETATM 30 O OAG Y01 . . . J 3 118.371 96.373 87.032 1 77.42 ? OAG Y01 603 B 1 HETATM 31 C CAM Y01 . . . J 3 120.46 96.686 85.817 1 76.2 ? CAM Y01 603 B 1 HETATM 32 C CAL Y01 . . . J 3 121.457 96.349 86.933 1 80.37 ? CAL Y01 603 B 1 HETATM 33 C CAX Y01 . . . J 3 121.034 95.09 87.701 1 84.27 ? CAX Y01 603 B 1 HETATM 34 O OAH Y01 . . . J 3 120.832 94.049 87.029 1 86.59 ? OAH Y01 603 B 1 HETATM 35 O OAF Y01 . . . J 3 120.906 95.206 88.943 1 85.38 ? OAF Y01 603 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #