data_7CGP # _model_server_result.job_id umc-dBVru5Ev_Hc6OxLYDg _model_server_result.datetime_utc '2025-08-31 21:52:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cgp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":301}' # _entry.id 7CGP # _exptl.entry_id 7CGP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 744.034 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CGP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CGP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentadecameric _pdbx_struct_assembly.oligomeric_count 15 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 69 A CYS 69 1_555 A SG CYS 141 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 A SG CYS 160 A CYS 160 1_555 A SG CYS 179 A CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 D SG CYS 28 D CYS 28 1_555 D SG CYS 52 D CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 D SG CYS 32 D CYS 32 1_555 D SG CYS 48 D CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 E SG CYS 28 E CYS 28 1_555 E SG CYS 52 E CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 E SG CYS 32 E CYS 32 1_555 E SG CYS 48 E CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 F SG CYS 28 F CYS 28 1_555 F SG CYS 52 F CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 F SG CYS 32 F CYS 32 1_555 F SG CYS 48 F CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 G SG CYS 29 G CYS 29 1_555 G SG CYS 54 G CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 G SG CYS 33 G CYS 33 1_555 G SG CYS 50 G CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 H SG CYS 29 H CYS 29 1_555 H SG CYS 54 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 H SG CYS 33 H CYS 33 1_555 H SG CYS 50 H CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 I SG CYS 29 I CYS 29 1_555 I SG CYS 54 I CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf14 I SG CYS 33 I CYS 33 1_555 I SG CYS 50 I CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf15 J SG CYS 28 J CYS 28 1_555 J SG CYS 52 J CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf16 J SG CYS 32 J CYS 32 1_555 J SG CYS 48 J CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf17 K SG CYS 28 K CYS 28 1_555 K SG CYS 52 K CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf18 K SG CYS 32 K CYS 32 1_555 K SG CYS 48 K CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf19 L SG CYS 28 L CYS 28 1_555 L SG CYS 52 L CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf20 L SG CYS 32 L CYS 32 1_555 L SG CYS 48 L CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf21 M SG CYS 29 M CYS 29 1_555 M SG CYS 54 M CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf22 M SG CYS 33 M CYS 33 1_555 M SG CYS 50 M CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf23 N SG CYS 29 N CYS 29 1_555 N SG CYS 54 N CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf24 N SG CYS 33 N CYS 33 1_555 N SG CYS 50 N CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf25 O SG CYS 29 O CYS 29 1_555 O SG CYS 54 O CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf26 O SG CYS 33 O CYS 33 1_555 O SG CYS 50 O CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C5 PEE sing 235 n n C5 C4 PEE sing 236 n n C4 O4P PEE sing 237 n n O4P P PEE sing 238 n n O1P P PEE doub 239 n n C1 O3P PEE sing 240 n n C1 C2 PEE sing 241 n n O3P P PEE sing 242 n n P O2P PEE sing 243 n n C2 C3 PEE sing 244 n n C2 O2 PEE sing 245 n n C3 O3 PEE sing 246 n n O2 C10 PEE sing 247 n n C31 C30 PEE sing 248 n n C31 C32 PEE sing 249 n n C33 C32 PEE sing 250 n n C33 C34 PEE sing 251 n n C30 O3 PEE sing 252 n n C30 O5 PEE doub 253 n n C10 O4 PEE doub 254 n n C10 C11 PEE sing 255 n n C34 C35 PEE sing 256 n n C11 C12 PEE sing 257 n n C35 C36 PEE sing 258 n n C36 C37 PEE sing 259 n n C37 C38 PEE sing 260 n n C38 C39 PEE doub 261 z n C12 C13 PEE sing 262 n n C39 C40 PEE sing 263 n n C13 C14 PEE sing 264 n n C14 C15 PEE sing 265 n n C40 C41 PEE sing 266 n n C15 C16 PEE sing 267 n n C41 C42 PEE sing 268 n n C16 C17 PEE sing 269 n n C42 C43 PEE sing 270 n n C17 C18 PEE sing 271 n n C43 C44 PEE sing 272 n n C18 C19 PEE doub 273 z n C46 C47 PEE sing 274 n n C46 C45 PEE sing 275 n n C44 C45 PEE sing 276 n n C19 C20 PEE sing 277 n n C20 C21 PEE sing 278 n n C21 C22 PEE sing 279 n n C22 C23 PEE sing 280 n n C23 C24 PEE sing 281 n n C24 C25 PEE sing 282 n n C26 C25 PEE sing 283 n n C26 C27 PEE sing 284 n n C27 H7 PEE sing 285 n n C27 H8 PEE sing 286 n n C27 H82 PEE sing 287 n n C26 H5 PEE sing 288 n n C26 H6 PEE sing 289 n n C25 H12 PEE sing 290 n n C25 H4 PEE sing 291 n n C24 H10 PEE sing 292 n n C24 H11 PEE sing 293 n n C23 H83 PEE sing 294 n n C23 H9 PEE sing 295 n n C22 H2 PEE sing 296 n n C22 H3 PEE sing 297 n n C21 H14 PEE sing 298 n n C21 H1 PEE sing 299 n n C20 H16 PEE sing 300 n n C20 H13 PEE sing 301 n n C19 H18 PEE sing 302 n n C18 H20 PEE sing 303 n n C17 H22 PEE sing 304 n n C17 H19 PEE sing 305 n n C16 H21 PEE sing 306 n n C16 H28 PEE sing 307 n n C15 H23 PEE sing 308 n n C15 H24 PEE sing 309 n n C14 H25 PEE sing 310 n n C14 H26 PEE sing 311 n n C13 H17 PEE sing 312 n n C13 H27 PEE sing 313 n n C12 H15 PEE sing 314 n n C12 H29 PEE sing 315 n n C11 H30 PEE sing 316 n n C11 H31 PEE sing 317 n n C2 H32 PEE sing 318 n n C1 H33 PEE sing 319 n n C1 H34 PEE sing 320 n n O2P H35 PEE sing 321 n n C4 H36 PEE sing 322 n n C4 H37 PEE sing 323 n n C5 H38 PEE sing 324 n n C5 H39 PEE sing 325 n n N H40 PEE sing 326 n n N H41 PEE sing 327 n n C3 H43 PEE sing 328 n n C3 H44 PEE sing 329 n n C31 H45 PEE sing 330 n n C31 H46 PEE sing 331 n n C32 H47 PEE sing 332 n n C32 H48 PEE sing 333 n n C33 H49 PEE sing 334 n n C33 H50 PEE sing 335 n n C34 H51 PEE sing 336 n n C34 H52 PEE sing 337 n n C35 H53 PEE sing 338 n n C35 H54 PEE sing 339 n n C36 H55 PEE sing 340 n n C36 H56 PEE sing 341 n n C37 H57 PEE sing 342 n n C37 H58 PEE sing 343 n n C38 H59 PEE sing 344 n n C39 H60 PEE sing 345 n n C40 H81 PEE sing 346 n n C40 H61 PEE sing 347 n n C41 H80 PEE sing 348 n n C41 H62 PEE sing 349 n n C42 H63 PEE sing 350 n n C42 H64 PEE sing 351 n n C43 H65 PEE sing 352 n n C43 H66 PEE sing 353 n n C44 H67 PEE sing 354 n n C44 H68 PEE sing 355 n n C45 H69 PEE sing 356 n n C45 H70 PEE sing 357 n n C46 H71 PEE sing 358 n n C46 H72 PEE sing 359 n n C47 H73 PEE sing 360 n n C47 H74 PEE sing 361 n n C47 H75 PEE sing 362 n n # _atom_sites.entry_id 7CGP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id P _pdbx_nonpoly_scheme.entity_id 7 _pdbx_nonpoly_scheme.mon_id PEE _pdbx_nonpoly_scheme.pdb_strand_id C _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id PEE _pdbx_nonpoly_scheme.auth_mon_id PEE _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 PEE . . . P 7 165.149 151.885 177.717 1 20 ? C27 PEE 301 C 1 HETATM 2 C C26 PEE . . . P 7 165.407 152.428 176.331 1 20 ? C26 PEE 301 C 1 HETATM 3 C C25 PEE . . . P 7 164.431 151.933 175.294 1 20 ? C25 PEE 301 C 1 HETATM 4 C C24 PEE . . . P 7 163.36 152.929 174.923 1 20 ? C24 PEE 301 C 1 HETATM 5 C C23 PEE . . . P 7 161.986 152.328 174.755 1 20 ? C23 PEE 301 C 1 HETATM 6 C C22 PEE . . . P 7 160.859 153.328 174.832 1 20 ? C22 PEE 301 C 1 HETATM 7 C C21 PEE . . . P 7 160.413 153.654 176.237 1 20 ? C21 PEE 301 C 1 HETATM 8 C C20 PEE . . . P 7 159.375 154.746 176.319 1 20 ? C20 PEE 301 C 1 HETATM 9 C C19 PEE . . . P 7 159.123 155.258 177.716 1 20 ? C19 PEE 301 C 1 HETATM 10 C C18 PEE . . . P 7 158.552 156.653 177.771 1 20 ? C18 PEE 301 C 1 HETATM 11 C C17 PEE . . . P 7 159.527 157.738 177.383 1 20 ? C17 PEE 301 C 1 HETATM 12 C C16 PEE . . . P 7 159.188 159.102 177.932 1 20 ? C16 PEE 301 C 1 HETATM 13 C C15 PEE . . . P 7 158.609 160.054 176.914 1 20 ? C15 PEE 301 C 1 HETATM 14 C C14 PEE . . . P 7 157.117 160.247 177.025 1 20 ? C14 PEE 301 C 1 HETATM 15 C C13 PEE . . . P 7 156.514 161.066 175.911 1 20 ? C13 PEE 301 C 1 HETATM 16 C C12 PEE . . . P 7 157.005 162.502 175.856 1 20 ? C12 PEE 301 C 1 HETATM 17 C C11 PEE . . . P 7 156.091 163.391 175.073 1 20 ? C11 PEE 301 C 1 HETATM 18 C C10 PEE . . . P 7 155.751 164.67 175.783 1 20 ? C10 PEE 301 C 1 HETATM 19 O O4 PEE . . . P 7 156.136 165.761 175.452 1 20 ? O4 PEE 301 C 1 HETATM 20 O O2 PEE . . . P 7 154.963 164.481 176.852 1 20 ? O2 PEE 301 C 1 HETATM 21 C C2 PEE . . . P 7 153.582 164.928 176.772 1 20 ? C2 PEE 301 C 1 HETATM 22 C C1 PEE . . . P 7 153.509 166.184 175.934 1 20 ? C1 PEE 301 C 1 HETATM 23 O O3P PEE . . . P 7 152.33 166.944 176.313 1 20 ? O3P PEE 301 C 1 HETATM 24 P P PEE . . . P 7 152.052 168.361 175.612 1 20 ? P PEE 301 C 1 HETATM 25 O O2P PEE . . . P 7 153.059 168.537 174.509 1 20 ? O2P PEE 301 C 1 HETATM 26 O O1P PEE . . . P 7 150.582 168.456 175.312 1 20 ? O1P PEE 301 C 1 HETATM 27 O O4P PEE . . . P 7 152.398 169.415 176.773 1 20 ? O4P PEE 301 C 1 HETATM 28 C C4 PEE . . . P 7 153.712 170.033 176.801 1 20 ? C4 PEE 301 C 1 HETATM 29 C C5 PEE . . . P 7 153.567 171.521 176.615 1 20 ? C5 PEE 301 C 1 HETATM 30 N N PEE . . . P 7 154.877 172.208 176.67 1 20 ? N PEE 301 C 1 HETATM 31 C C3 PEE . . . P 7 152.722 163.802 176.246 1 20 ? C3 PEE 301 C 1 HETATM 32 O O3 PEE . . . P 7 152.069 163.161 177.363 1 20 ? O3 PEE 301 C 1 HETATM 33 C C30 PEE . . . P 7 152.195 161.84 177.435 1 20 ? C30 PEE 301 C 1 HETATM 34 O O5 PEE . . . P 7 151.537 161.078 176.778 1 20 ? O5 PEE 301 C 1 HETATM 35 C C31 PEE . . . P 7 153.25 161.441 178.428 1 20 ? C31 PEE 301 C 1 HETATM 36 C C32 PEE . . . P 7 153.982 160.193 178.045 1 20 ? C32 PEE 301 C 1 HETATM 37 C C33 PEE . . . P 7 153.605 159.007 178.915 1 20 ? C33 PEE 301 C 1 HETATM 38 C C34 PEE . . . P 7 154.235 157.703 178.491 1 20 ? C34 PEE 301 C 1 HETATM 39 C C35 PEE . . . P 7 153.33 156.504 178.632 1 20 ? C35 PEE 301 C 1 HETATM 40 C C36 PEE . . . P 7 154.008 155.181 178.369 1 20 ? C36 PEE 301 C 1 HETATM 41 C C37 PEE . . . P 7 153.83 154.163 179.469 1 20 ? C37 PEE 301 C 1 HETATM 42 C C38 PEE . . . P 7 155.077 153.378 179.796 1 20 ? C38 PEE 301 C 1 HETATM 43 C C39 PEE . . . P 7 155.347 153.233 181.274 1 20 ? C39 PEE 301 C 1 HETATM 44 C C40 PEE . . . P 7 156.796 152.985 181.618 1 20 ? C40 PEE 301 C 1 HETATM 45 C C41 PEE . . . P 7 157.015 152.396 182.99 1 20 ? C41 PEE 301 C 1 HETATM 46 C C42 PEE . . . P 7 158.114 151.364 183.054 1 20 ? C42 PEE 301 C 1 HETATM 47 C C43 PEE . . . P 7 157.843 150.227 184.008 1 20 ? C43 PEE 301 C 1 HETATM 48 C C44 PEE . . . P 7 157.723 148.876 183.345 1 20 ? C44 PEE 301 C 1 HETATM 49 C C45 PEE . . . P 7 156.503 148.089 183.757 1 20 ? C45 PEE 301 C 1 HETATM 50 C C46 PEE . . . P 7 156.338 146.773 183.04 1 20 ? C46 PEE 301 C 1 HETATM 51 C C47 PEE . . . P 7 155.813 145.662 183.918 1 20 ? C47 PEE 301 C 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 51 #