data_7CH9
#
_model_server_result.job_id            jI_9zG3twQQqSKDU6V-FrA 
_model_server_result.datetime_utc      '2024-11-21 14:48:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ch9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":301}' 
#
_entry.id    7CH9 
#
_exptl.entry_id    7CH9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              648.891 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE' 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7CH9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7CH9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 M N N 
? 5 N N N 
? 5 O N N 
? 5 P N N 
? 5 Q N N 
? 5 R N N 
? 5 S N N 
? 5 T N N 
? 5 U N N 
? 5 V N N 
#
_chem_comp.formula           'C35 H69 O8 P' 
_chem_comp.formula_weight    648.891 
_chem_comp.id                LPP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE;L-B,G-DIPALMITOYL-A-PHOSPHATIDIC ACID DISODIUM SALT;3-SN-PHOSPHATIDIC ACID;1,2-DIPALMITOYLDISODIUM SALT' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O2 LPP sing 192 n n 
P1 O3 LPP doub 193 n n 
P1 O4 LPP sing 194 n n 
P1 O5 LPP sing 195 n n 
O2 HO2 LPP sing 196 n n 
O4 HO4 LPP sing 197 n n 
O5 C6 LPP sing 198 n n 
C6 C7 LPP sing 199 n n 
C6 HC61 LPP sing 200 n n 
C6 HC62 LPP sing 201 n n 
C7 C8 LPP sing 202 n n 
C7 O9 LPP sing 203 n n 
C7 HC7 LPP sing 204 n n 
C8 O27 LPP sing 205 n n 
C8 HC81 LPP sing 206 n n 
C8 HC82 LPP sing 207 n n 
O9 C11 LPP sing 208 n n 
O27 C29 LPP sing 209 n n 
C11 O10 LPP doub 210 n n 
C11 C12 LPP sing 211 n n 
C12 C13 LPP sing 212 n n 
C12 H121 LPP sing 213 n n 
C12 H122 LPP sing 214 n n 
C13 C14 LPP sing 215 n n 
C13 H131 LPP sing 216 n n 
C13 H132 LPP sing 217 n n 
C14 C15 LPP sing 218 n n 
C14 H141 LPP sing 219 n n 
C14 H142 LPP sing 220 n n 
C15 C16 LPP sing 221 n n 
C15 H151 LPP sing 222 n n 
C15 H152 LPP sing 223 n n 
C16 C17 LPP sing 224 n n 
C16 H161 LPP sing 225 n n 
C16 H162 LPP sing 226 n n 
C17 C18 LPP sing 227 n n 
C17 H171 LPP sing 228 n n 
C17 H172 LPP sing 229 n n 
C18 C19 LPP sing 230 n n 
C18 H181 LPP sing 231 n n 
C18 H182 LPP sing 232 n n 
C19 C20 LPP sing 233 n n 
C19 H191 LPP sing 234 n n 
C19 H192 LPP sing 235 n n 
C20 C21 LPP sing 236 n n 
C20 H201 LPP sing 237 n n 
C20 H202 LPP sing 238 n n 
C21 C22 LPP sing 239 n n 
C21 H211 LPP sing 240 n n 
C21 H212 LPP sing 241 n n 
C22 C23 LPP sing 242 n n 
C22 H221 LPP sing 243 n n 
C22 H222 LPP sing 244 n n 
C23 C24 LPP sing 245 n n 
C23 H231 LPP sing 246 n n 
C23 H232 LPP sing 247 n n 
C24 C25 LPP sing 248 n n 
C24 H241 LPP sing 249 n n 
C24 H242 LPP sing 250 n n 
C25 C26 LPP sing 251 n n 
C25 H251 LPP sing 252 n n 
C25 H252 LPP sing 253 n n 
C26 H261 LPP sing 254 n n 
C26 H262 LPP sing 255 n n 
C26 H263 LPP sing 256 n n 
C29 O28 LPP doub 257 n n 
C29 C30 LPP sing 258 n n 
C30 C31 LPP sing 259 n n 
C30 H301 LPP sing 260 n n 
C30 H302 LPP sing 261 n n 
C31 C32 LPP sing 262 n n 
C31 H311 LPP sing 263 n n 
C31 H312 LPP sing 264 n n 
C32 C33 LPP sing 265 n n 
C32 H321 LPP sing 266 n n 
C32 H322 LPP sing 267 n n 
C33 C34 LPP sing 268 n n 
C33 H331 LPP sing 269 n n 
C33 H332 LPP sing 270 n n 
C34 C35 LPP sing 271 n n 
C34 H341 LPP sing 272 n n 
C34 H342 LPP sing 273 n n 
C35 C36 LPP sing 274 n n 
C35 H351 LPP sing 275 n n 
C35 H352 LPP sing 276 n n 
C36 C37 LPP sing 277 n n 
C36 H361 LPP sing 278 n n 
C36 H362 LPP sing 279 n n 
C37 C38 LPP sing 280 n n 
C37 H371 LPP sing 281 n n 
C37 H372 LPP sing 282 n n 
C38 C39 LPP sing 283 n n 
C38 H381 LPP sing 284 n n 
C38 H382 LPP sing 285 n n 
C39 C40 LPP sing 286 n n 
C39 H391 LPP sing 287 n n 
C39 H392 LPP sing 288 n n 
C40 C41 LPP sing 289 n n 
C40 H401 LPP sing 290 n n 
C40 H402 LPP sing 291 n n 
C41 C42 LPP sing 292 n n 
C41 H411 LPP sing 293 n n 
C41 H412 LPP sing 294 n n 
C42 C43 LPP sing 295 n n 
C42 H421 LPP sing 296 n n 
C42 H422 LPP sing 297 n n 
C43 C44 LPP sing 298 n n 
C43 H431 LPP sing 299 n n 
C43 H432 LPP sing 300 n n 
C44 H441 LPP sing 301 n n 
C44 H442 LPP sing 302 n n 
C44 H443 LPP sing 303 n n 
#
_atom_sites.entry_id                     7CH9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 5 LPP A 1 301 301 LPP PEF . 
N 5 LPP B 1 201 201 LPP PEF . 
O 5 LPP B 1 202 301 LPP PEF . 
P 5 LPP C 1 201 201 LPP PEF . 
Q 5 LPP C 1 202 201 LPP PEF . 
R 5 LPP E 1 201 201 LPP PEF . 
S 5 LPP F 1 201 201 LPP PEF . 
T 5 LPP G 1 301 4 LPP PEF . 
U 5 LPP G 1 302 5 LPP PEF . 
V 5 LPP H 1 301 1 LPP PEF . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 LPP . . . V 5 112.477 122.486 105.293 1 84.39 ? P1 LPP 301 H 1 
HETATM 2 O O2 LPP . . . V 5 113.067 122.032 103.982 1 84.39 ? O2 LPP 301 H 1 
HETATM 3 O O3 LPP . . . V 5 113.317 123.591 105.881 1 84.39 ? O3 LPP 301 H 1 
HETATM 4 O O4 LPP . . . V 5 111.077 122.993 105.057 1 84.39 ? O4 LPP 301 H 1 
HETATM 5 O O5 LPP . . . V 5 112.446 121.219 106.34 1 84.39 ? O5 LPP 301 H 1 
HETATM 6 C C6 LPP . . . V 5 113.522 121.059 107.218 1 84.39 ? C6 LPP 301 H 1 
HETATM 7 C C7 LPP . . . V 5 113.185 119.913 108.17 1 84.39 ? C7 LPP 301 H 1 
HETATM 8 C C8 LPP . . . V 5 114.452 119.157 108.569 1 84.39 ? C8 LPP 301 H 1 
HETATM 9 O O9 LPP . . . V 5 112.503 120.394 109.301 1 84.39 ? O9 LPP 301 H 1 
HETATM 10 O O27 LPP . . . V 5 114.045 117.907 109.035 1 84.39 ? O27 LPP 301 H 1 
HETATM 11 C C11 LPP . . . V 5 113.278 120.89 110.359 1 84.39 ? C11 LPP 301 H 1 
HETATM 12 O O10 LPP . . . V 5 113.985 121.823 110.198 1 84.39 ? O10 LPP 301 H 1 
HETATM 13 C C12 LPP . . . V 5 113.201 120.248 111.743 1 84.39 ? C12 LPP 301 H 1 
HETATM 14 C C13 LPP . . . V 5 113.804 121.142 112.823 1 84.39 ? C13 LPP 301 H 1 
HETATM 15 C C14 LPP . . . V 5 114.531 120.335 113.894 1 84.39 ? C14 LPP 301 H 1 
HETATM 16 C C15 LPP . . . V 5 114.021 120.653 115.295 1 84.39 ? C15 LPP 301 H 1 
HETATM 17 C C16 LPP . . . V 5 114.186 119.467 116.242 1 84.39 ? C16 LPP 301 H 1 
HETATM 18 C C17 LPP . . . V 5 113.856 119.836 117.686 1 84.39 ? C17 LPP 301 H 1 
HETATM 19 C C18 LPP . . . V 5 113.167 118.698 118.433 1 84.39 ? C18 LPP 301 H 1 
HETATM 20 C C19 LPP . . . V 5 112.807 119.107 119.859 1 84.39 ? C19 LPP 301 H 1 
HETATM 21 C C20 LPP . . . V 5 111.765 120.222 119.884 1 84.39 ? C20 LPP 301 H 1 
HETATM 22 C C21 LPP . . . V 5 111.429 120.673 121.304 1 84.39 ? C21 LPP 301 H 1 
HETATM 23 C C22 LPP . . . V 5 109.955 120.479 121.656 1 84.39 ? C22 LPP 301 H 1 
HETATM 24 C C23 LPP . . . V 5 109.316 121.763 122.186 1 84.39 ? C23 LPP 301 H 1 
HETATM 25 C C24 LPP . . . V 5 108.642 121.575 123.544 1 84.39 ? C24 LPP 301 H 1 
HETATM 26 C C25 LPP . . . V 5 109.044 122.65 124.555 1 84.39 ? C25 LPP 301 H 1 
HETATM 27 C C26 LPP . . . V 5 107.915 122.998 125.523 1 84.39 ? C26 LPP 301 H 1 
HETATM 28 C C29 LPP . . . V 5 115.012 117.23 109.779 1 84.39 ? C29 LPP 301 H 1 
HETATM 29 O O28 LPP . . . V 5 115.997 116.854 109.248 1 84.39 ? O28 LPP 301 H 1 
HETATM 30 C C30 LPP . . . V 5 114.795 116.984 111.27 1 84.39 ? C30 LPP 301 H 1 
HETATM 31 C C31 LPP . . . V 5 115.15 115.559 111.691 1 84.39 ? C31 LPP 301 H 1 
HETATM 32 C C32 LPP . . . V 5 114.34 115.099 112.9 1 84.39 ? C32 LPP 301 H 1 
HETATM 33 C C33 LPP . . . V 5 114.686 115.87 114.17 1 84.39 ? C33 LPP 301 H 1 
HETATM 34 C C34 LPP . . . V 5 113.994 115.28 115.397 1 84.39 ? C34 LPP 301 H 1 
HETATM 35 C C35 LPP . . . V 5 114.978 114.629 116.366 1 84.39 ? C35 LPP 301 H 1 
HETATM 36 C C36 LPP . . . V 5 114.337 113.518 117.197 1 84.39 ? C36 LPP 301 H 1 
HETATM 37 C C37 LPP . . . V 5 115.348 112.456 117.625 1 84.39 ? C37 LPP 301 H 1 
HETATM 38 C C38 LPP . . . V 5 115.138 111.997 119.065 1 84.39 ? C38 LPP 301 H 1 
HETATM 39 C C39 LPP . . . V 5 116.39 111.352 119.654 1 84.39 ? C39 LPP 301 H 1 
HETATM 40 C C40 LPP . . . V 5 116.053 110.25 120.656 1 84.39 ? C40 LPP 301 H 1 
HETATM 41 C C41 LPP . . . V 5 116.656 110.491 122.039 1 84.39 ? C41 LPP 301 H 1 
HETATM 42 C C42 LPP . . . V 5 116.818 109.198 122.838 1 84.39 ? C42 LPP 301 H 1 
HETATM 43 C C43 LPP . . . V 5 116.113 109.249 124.192 1 84.39 ? C43 LPP 301 H 1 
HETATM 44 C C44 LPP . . . V 5 117.046 108.906 125.35 1 84.39 ? C44 LPP 301 H 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           343 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           44 
#