data_7CIB # _model_server_result.job_id k7Z7OOIJUbINg8SdpQyC_Q _model_server_result.datetime_utc '2024-11-08 07:35:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cib # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1300}' # _entry.id 7CIB # _exptl.entry_id 7CIB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 214.217 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-oxidanyl-4-phenyl-benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CIB _cell.length_a 35.78 _cell.length_b 75.8 _cell.length_c 95.78 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CIB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 78 A HIS 78 1_555 F ZN ZN . A ZN 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc2 A NE2 HIS 237 A HIS 237 1_555 F ZN ZN . A ZN 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc3 A OD1 ASP 241 A ASP 241 1_555 F ZN ZN . A ZN 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C13 H10 O3' _chem_comp.formula_weight 214.217 _chem_comp.id FYR _chem_comp.mon_nstd_flag . _chem_comp.name '2-oxidanyl-4-phenyl-benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C13 FYR doub 92 n y C14 C15 FYR sing 93 n y C13 C12 FYR sing 94 n y C15 C16 FYR doub 95 n y C12 C11 FYR doub 96 n y C16 C11 FYR sing 97 n y C11 C02 FYR sing 98 n n C02 C03 FYR doub 99 n y C02 C01 FYR sing 100 n y C03 C04 FYR sing 101 n y C01 C06 FYR doub 102 n y C04 O08 FYR sing 103 n n C04 C05 FYR doub 104 n y C06 C05 FYR sing 105 n y C05 C07 FYR sing 106 n n C07 O10 FYR doub 107 n n C07 O09 FYR sing 108 n n C01 H1 FYR sing 109 n n C03 H2 FYR sing 110 n n C06 H3 FYR sing 111 n n O08 H4 FYR sing 112 n n O09 H5 FYR sing 113 n n C12 H6 FYR sing 114 n n C13 H7 FYR sing 115 n n C14 H8 FYR sing 116 n n C15 H9 FYR sing 117 n n C16 H10 FYR sing 118 n n # _atom_sites.entry_id 7CIB _atom_sites.fract_transf_matrix[1][1] 0.027949 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013193 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010441 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FYR A 1 1300 1300 FYR U01 . C 3 DMS A 1 1301 1301 DMS DMS . D 3 DMS A 1 1302 1302 DMS DMS . E 3 DMS A 1 1303 1303 DMS DMS . F 4 ZN A 1 1304 1304 ZN ZN . G 5 HOH A 1 2001 2001 HOH HOH . G 5 HOH A 2 2002 2080 HOH HOH . G 5 HOH A 3 2003 2054 HOH HOH . G 5 HOH A 4 2004 2070 HOH HOH . G 5 HOH A 5 2005 2184 HOH HOH . G 5 HOH A 6 2006 2006 HOH HOH . G 5 HOH A 7 2007 2165 HOH HOH . G 5 HOH A 8 2008 2193 HOH HOH . G 5 HOH A 9 2009 2201 HOH HOH . G 5 HOH A 10 2010 2134 HOH HOH . G 5 HOH A 11 2011 2135 HOH HOH . G 5 HOH A 12 2012 2166 HOH HOH . G 5 HOH A 13 2013 2126 HOH HOH . G 5 HOH A 14 2014 2163 HOH HOH . G 5 HOH A 15 2015 2068 HOH HOH . G 5 HOH A 16 2016 2115 HOH HOH . G 5 HOH A 17 2017 2171 HOH HOH . G 5 HOH A 18 2018 2091 HOH HOH . G 5 HOH A 19 2019 2185 HOH HOH . G 5 HOH A 20 2020 2194 HOH HOH . G 5 HOH A 21 2021 2004 HOH HOH . G 5 HOH A 22 2022 2094 HOH HOH . G 5 HOH A 23 2023 2180 HOH HOH . G 5 HOH A 24 2024 2069 HOH HOH . G 5 HOH A 25 2025 2131 HOH HOH . G 5 HOH A 26 2026 2073 HOH HOH . G 5 HOH A 27 2027 2025 HOH HOH . G 5 HOH A 28 2028 2042 HOH HOH . G 5 HOH A 29 2029 2197 HOH HOH . G 5 HOH A 30 2030 2142 HOH HOH . G 5 HOH A 31 2031 2088 HOH HOH . G 5 HOH A 32 2032 2034 HOH HOH . G 5 HOH A 33 2033 2036 HOH HOH . G 5 HOH A 34 2034 2066 HOH HOH . G 5 HOH A 35 2035 2140 HOH HOH . G 5 HOH A 36 2036 2090 HOH HOH . G 5 HOH A 37 2037 2174 HOH HOH . G 5 HOH A 38 2038 2048 HOH HOH . G 5 HOH A 39 2039 2190 HOH HOH . G 5 HOH A 40 2040 2148 HOH HOH . G 5 HOH A 41 2041 2147 HOH HOH . G 5 HOH A 42 2042 2176 HOH HOH . G 5 HOH A 43 2043 2097 HOH HOH . G 5 HOH A 44 2044 2104 HOH HOH . G 5 HOH A 45 2045 2014 HOH HOH . G 5 HOH A 46 2046 2105 HOH HOH . G 5 HOH A 47 2047 2058 HOH HOH . G 5 HOH A 48 2048 2164 HOH HOH . G 5 HOH A 49 2049 2024 HOH HOH . G 5 HOH A 50 2050 2107 HOH HOH . G 5 HOH A 51 2051 2033 HOH HOH . G 5 HOH A 52 2052 2144 HOH HOH . G 5 HOH A 53 2053 2089 HOH HOH . G 5 HOH A 54 2054 2206 HOH HOH . G 5 HOH A 55 2055 2084 HOH HOH . G 5 HOH A 56 2056 2032 HOH HOH . G 5 HOH A 57 2057 2011 HOH HOH . G 5 HOH A 58 2058 2117 HOH HOH . G 5 HOH A 59 2059 2076 HOH HOH . G 5 HOH A 60 2060 2075 HOH HOH . G 5 HOH A 61 2061 2005 HOH HOH . G 5 HOH A 62 2062 2012 HOH HOH . G 5 HOH A 63 2063 2132 HOH HOH . G 5 HOH A 64 2064 2029 HOH HOH . G 5 HOH A 65 2065 2114 HOH HOH . G 5 HOH A 66 2066 2191 HOH HOH . G 5 HOH A 67 2067 2208 HOH HOH . G 5 HOH A 68 2068 2026 HOH HOH . G 5 HOH A 69 2069 2155 HOH HOH . G 5 HOH A 70 2070 2168 HOH HOH . G 5 HOH A 71 2071 2152 HOH HOH . G 5 HOH A 72 2072 2085 HOH HOH . G 5 HOH A 73 2073 2047 HOH HOH . G 5 HOH A 74 2074 2203 HOH HOH . G 5 HOH A 75 2075 2212 HOH HOH . G 5 HOH A 76 2076 2173 HOH HOH . G 5 HOH A 77 2077 2021 HOH HOH . G 5 HOH A 78 2078 2061 HOH HOH . G 5 HOH A 79 2079 2139 HOH HOH . G 5 HOH A 80 2080 2181 HOH HOH . G 5 HOH A 81 2081 2010 HOH HOH . G 5 HOH A 82 2082 2027 HOH HOH . G 5 HOH A 83 2083 2052 HOH HOH . G 5 HOH A 84 2084 2035 HOH HOH . G 5 HOH A 85 2085 2109 HOH HOH . G 5 HOH A 86 2086 2138 HOH HOH . G 5 HOH A 87 2087 2156 HOH HOH . G 5 HOH A 88 2088 2009 HOH HOH . G 5 HOH A 89 2089 2008 HOH HOH . G 5 HOH A 90 2090 2211 HOH HOH . G 5 HOH A 91 2091 2149 HOH HOH . G 5 HOH A 92 2092 2129 HOH HOH . G 5 HOH A 93 2093 2007 HOH HOH . G 5 HOH A 94 2094 2113 HOH HOH . G 5 HOH A 95 2095 2041 HOH HOH . G 5 HOH A 96 2096 2038 HOH HOH . G 5 HOH A 97 2097 2060 HOH HOH . G 5 HOH A 98 2098 2020 HOH HOH . G 5 HOH A 99 2099 2028 HOH HOH . G 5 HOH A 100 2100 2022 HOH HOH . G 5 HOH A 101 2101 2077 HOH HOH . G 5 HOH A 102 2102 2110 HOH HOH . G 5 HOH A 103 2103 2071 HOH HOH . G 5 HOH A 104 2104 2146 HOH HOH . G 5 HOH A 105 2105 2040 HOH HOH . G 5 HOH A 106 2106 2120 HOH HOH . G 5 HOH A 107 2107 2018 HOH HOH . G 5 HOH A 108 2108 2151 HOH HOH . G 5 HOH A 109 2109 2039 HOH HOH . G 5 HOH A 110 2110 2083 HOH HOH . G 5 HOH A 111 2111 2187 HOH HOH . G 5 HOH A 112 2112 2013 HOH HOH . G 5 HOH A 113 2113 2065 HOH HOH . G 5 HOH A 114 2114 2111 HOH HOH . G 5 HOH A 115 2115 2162 HOH HOH . G 5 HOH A 116 2116 2055 HOH HOH . G 5 HOH A 117 2117 2016 HOH HOH . G 5 HOH A 118 2118 2044 HOH HOH . G 5 HOH A 119 2119 2136 HOH HOH . G 5 HOH A 120 2120 2023 HOH HOH . G 5 HOH A 121 2121 2137 HOH HOH . G 5 HOH A 122 2122 2128 HOH HOH . G 5 HOH A 123 2123 2056 HOH HOH . G 5 HOH A 124 2124 2043 HOH HOH . G 5 HOH A 125 2125 2141 HOH HOH . G 5 HOH A 126 2126 2059 HOH HOH . G 5 HOH A 127 2127 2049 HOH HOH . G 5 HOH A 128 2128 2050 HOH HOH . G 5 HOH A 129 2129 2074 HOH HOH . G 5 HOH A 130 2130 2106 HOH HOH . G 5 HOH A 131 2131 2101 HOH HOH . G 5 HOH A 132 2132 2116 HOH HOH . G 5 HOH A 133 2133 2161 HOH HOH . G 5 HOH A 134 2134 2119 HOH HOH . G 5 HOH A 135 2135 2095 HOH HOH . G 5 HOH A 136 2136 2183 HOH HOH . G 5 HOH A 137 2137 2078 HOH HOH . G 5 HOH A 138 2138 2086 HOH HOH . G 5 HOH A 139 2139 2053 HOH HOH . G 5 HOH A 140 2140 2030 HOH HOH . G 5 HOH A 141 2141 2188 HOH HOH . G 5 HOH A 142 2142 2157 HOH HOH . G 5 HOH A 143 2143 2045 HOH HOH . G 5 HOH A 144 2144 2079 HOH HOH . G 5 HOH A 145 2145 2015 HOH HOH . G 5 HOH A 146 2146 2002 HOH HOH . G 5 HOH A 147 2147 2037 HOH HOH . G 5 HOH A 148 2148 2108 HOH HOH . G 5 HOH A 149 2149 2082 HOH HOH . G 5 HOH A 150 2150 2130 HOH HOH . G 5 HOH A 151 2151 2192 HOH HOH . G 5 HOH A 152 2152 2017 HOH HOH . G 5 HOH A 153 2153 2062 HOH HOH . G 5 HOH A 154 2154 2189 HOH HOH . G 5 HOH A 155 2155 2063 HOH HOH . G 5 HOH A 156 2156 2103 HOH HOH . G 5 HOH A 157 2157 2003 HOH HOH . G 5 HOH A 158 2158 2092 HOH HOH . G 5 HOH A 159 2159 2125 HOH HOH . G 5 HOH A 160 2160 2154 HOH HOH . G 5 HOH A 161 2161 2198 HOH HOH . G 5 HOH A 162 2162 2046 HOH HOH . G 5 HOH A 163 2163 2099 HOH HOH . G 5 HOH A 164 2164 2019 HOH HOH . G 5 HOH A 165 2165 2118 HOH HOH . G 5 HOH A 166 2166 2096 HOH HOH . G 5 HOH A 167 2167 2182 HOH HOH . G 5 HOH A 168 2168 2031 HOH HOH . G 5 HOH A 169 2169 2143 HOH HOH . G 5 HOH A 170 2170 2124 HOH HOH . G 5 HOH A 171 2171 2098 HOH HOH . G 5 HOH A 172 2172 2199 HOH HOH . G 5 HOH A 173 2173 2158 HOH HOH . G 5 HOH A 174 2174 2133 HOH HOH . G 5 HOH A 175 2175 2204 HOH HOH . G 5 HOH A 176 2176 2067 HOH HOH . G 5 HOH A 177 2177 2081 HOH HOH . G 5 HOH A 178 2178 2072 HOH HOH . G 5 HOH A 179 2179 2127 HOH HOH . G 5 HOH A 180 2180 2057 HOH HOH . G 5 HOH A 181 2181 2210 HOH HOH . G 5 HOH A 182 2182 2186 HOH HOH . G 5 HOH A 183 2183 2209 HOH HOH . G 5 HOH A 184 2184 2167 HOH HOH . G 5 HOH A 185 2185 2196 HOH HOH . G 5 HOH A 186 2186 2051 HOH HOH . G 5 HOH A 187 2187 2100 HOH HOH . G 5 HOH A 188 2188 2102 HOH HOH . G 5 HOH A 189 2189 2195 HOH HOH . G 5 HOH A 190 2190 2121 HOH HOH . G 5 HOH A 191 2191 2172 HOH HOH . G 5 HOH A 192 2192 2205 HOH HOH . G 5 HOH A 193 2193 2213 HOH HOH . G 5 HOH A 194 2194 2177 HOH HOH . G 5 HOH A 195 2195 2202 HOH HOH . G 5 HOH A 196 2196 2179 HOH HOH . G 5 HOH A 197 2197 2064 HOH HOH . G 5 HOH A 198 2198 2153 HOH HOH . G 5 HOH A 199 2199 2145 HOH HOH . G 5 HOH A 200 2200 2122 HOH HOH . G 5 HOH A 201 2201 2178 HOH HOH . G 5 HOH A 202 2202 2087 HOH HOH . G 5 HOH A 203 2203 2093 HOH HOH . G 5 HOH A 204 2204 2159 HOH HOH . G 5 HOH A 205 2205 2123 HOH HOH . G 5 HOH A 206 2206 2160 HOH HOH . G 5 HOH A 207 2207 2200 HOH HOH . G 5 HOH A 208 2208 2112 HOH HOH . G 5 HOH A 209 2209 2169 HOH HOH . G 5 HOH A 210 2210 2207 HOH HOH . G 5 HOH A 211 2211 2150 HOH HOH . G 5 HOH A 212 2212 2170 HOH HOH . G 5 HOH A 213 2213 2175 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 FYR . . . B 2 10.914 24.067 25.588 1 25.81 ? C01 FYR 1300 A 1 HETATM 2 C C02 FYR . . . B 2 10.235 23.024 24.949 1 25.09 ? C02 FYR 1300 A 1 HETATM 3 C C03 FYR . . . B 2 8.889 22.805 25.18 1 26.62 ? C03 FYR 1300 A 1 HETATM 4 C C04 FYR . . . B 2 8.245 23.627 26.07 1 27.49 ? C04 FYR 1300 A 1 HETATM 5 C C05 FYR . . . B 2 8.932 24.688 26.709 1 25.67 ? C05 FYR 1300 A 1 HETATM 6 C C06 FYR . . . B 2 10.263 24.878 26.492 1 24.25 ? C06 FYR 1300 A 1 HETATM 7 C C07 FYR . . . B 2 8.286 25.469 27.611 1 28.4 ? C07 FYR 1300 A 1 HETATM 8 O O08 FYR . . . B 2 6.938 23.482 26.353 1 28.46 ? O08 FYR 1300 A 1 HETATM 9 O O09 FYR . . . B 2 8.91 26.298 28.309 1 26.76 ? O09 FYR 1300 A 1 HETATM 10 O O10 FYR . . . B 2 7.097 25.249 27.812 1 26.84 ? O10 FYR 1300 A 1 HETATM 11 C C11 FYR . . . B 2 10.948 22.219 24.067 1 27.27 ? C11 FYR 1300 A 1 HETATM 12 C C12 FYR . . . B 2 11.937 22.774 23.225 1 24.92 ? C12 FYR 1300 A 1 HETATM 13 C C13 FYR . . . B 2 12.641 21.917 22.366 1 28.68 ? C13 FYR 1300 A 1 HETATM 14 C C14 FYR . . . B 2 12.408 20.539 22.318 1 27.18 ? C14 FYR 1300 A 1 HETATM 15 C C15 FYR . . . B 2 11.422 19.992 23.167 1 26.39 ? C15 FYR 1300 A 1 HETATM 16 C C16 FYR . . . B 2 10.715 20.841 24.04 1 24.85 ? C16 FYR 1300 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 16 #