data_7CID # _model_server_result.job_id AFEM4ka-SsacnVJwUdUSmw _model_server_result.datetime_utc '2024-11-29 17:12:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cid # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 7CID # _exptl.entry_id 7CID _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CID _cell.length_a 35.688 _cell.length_b 84.225 _cell.length_c 93.423 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CID _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 78 A HIS 78 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc2 A NE2 HIS 237 A HIS 237 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc3 A OD1 ASP 241 A ASP 241 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc4 B N13 FZ3 . A FZ3 301 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7CID _atom_sites.fract_transf_matrix[1][1] 0.028021 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011873 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010704 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FZ3 A 1 301 1287 FZ3 U01 . C 3 DMS A 1 302 1288 DMS DMS . D 4 ZN A 1 303 1289 ZN ZN . E 5 HOH A 1 401 2050 HOH HOH . E 5 HOH A 2 402 2048 HOH HOH . E 5 HOH A 3 403 2008 HOH HOH . E 5 HOH A 4 404 2049 HOH HOH . E 5 HOH A 5 405 2006 HOH HOH . E 5 HOH A 6 406 2051 HOH HOH . E 5 HOH A 7 407 2045 HOH HOH . E 5 HOH A 8 408 2053 HOH HOH . E 5 HOH A 9 409 2034 HOH HOH . E 5 HOH A 10 410 2032 HOH HOH . E 5 HOH A 11 411 2004 HOH HOH . E 5 HOH A 12 412 2042 HOH HOH . E 5 HOH A 13 413 2011 HOH HOH . E 5 HOH A 14 414 2021 HOH HOH . E 5 HOH A 15 415 2010 HOH HOH . E 5 HOH A 16 416 2026 HOH HOH . E 5 HOH A 17 417 2016 HOH HOH . E 5 HOH A 18 418 2014 HOH HOH . E 5 HOH A 19 419 2024 HOH HOH . E 5 HOH A 20 420 2031 HOH HOH . E 5 HOH A 21 421 2003 HOH HOH . E 5 HOH A 22 422 2030 HOH HOH . E 5 HOH A 23 423 2020 HOH HOH . E 5 HOH A 24 424 2038 HOH HOH . E 5 HOH A 25 425 2019 HOH HOH . E 5 HOH A 26 426 2023 HOH HOH . E 5 HOH A 27 427 2029 HOH HOH . E 5 HOH A 28 428 2041 HOH HOH . E 5 HOH A 29 429 2012 HOH HOH . E 5 HOH A 30 430 2013 HOH HOH . E 5 HOH A 31 431 2017 HOH HOH . E 5 HOH A 32 432 2044 HOH HOH . E 5 HOH A 33 433 2022 HOH HOH . E 5 HOH A 34 434 2009 HOH HOH . E 5 HOH A 35 435 2028 HOH HOH . E 5 HOH A 36 436 2035 HOH HOH . E 5 HOH A 37 437 2037 HOH HOH . E 5 HOH A 38 438 2018 HOH HOH . E 5 HOH A 39 439 2027 HOH HOH . E 5 HOH A 40 440 2040 HOH HOH . E 5 HOH A 41 441 2002 HOH HOH . E 5 HOH A 42 442 2001 HOH HOH . E 5 HOH A 43 443 2052 HOH HOH . E 5 HOH A 44 444 2046 HOH HOH . E 5 HOH A 45 445 2036 HOH HOH . E 5 HOH A 46 446 2043 HOH HOH . E 5 HOH A 47 447 2007 HOH HOH . E 5 HOH A 48 448 2047 HOH HOH . E 5 HOH A 49 449 2005 HOH HOH . E 5 HOH A 50 450 2039 HOH HOH . E 5 HOH A 51 451 2033 HOH HOH . E 5 HOH A 52 452 2015 HOH HOH . E 5 HOH A 53 453 2025 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 11.433 -19.859 -9.918 1 32.68 ? S DMS 302 A 1 HETATM 2 O O DMS . . . C 3 10.392 -18.945 -9.378 1 33.6 ? O DMS 302 A 1 HETATM 3 C C1 DMS . . . C 3 11.072 -21.458 -9.245 1 33.1 ? C1 DMS 302 A 1 HETATM 4 C C2 DMS . . . C 3 10.968 -20.239 -11.577 1 30.9 ? C2 DMS 302 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #