data_7CJ1 # _model_server_result.job_id bvAe--14H12Bl-cXlx_L0A _model_server_result.datetime_utc '2024-10-10 21:23:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cj1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1001}' # _entry.id 7CJ1 # _exptl.entry_id 7CJ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.152 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZAMIDINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7CJ1 _cell.length_a 49.084 _cell.length_b 49.084 _cell.length_c 335.136 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CJ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 40 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 158 A CYS 168 1_555 A SG CYS 173 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 184 A CYS 191 1_555 A SG CYS 212 A CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 B SG CYS 29 B CYS 40 1_555 B SG CYS 45 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? disulf ? disulf5 B SG CYS 158 B CYS 168 1_555 B SG CYS 173 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf6 B SG CYS 184 B CYS 191 1_555 B SG CYS 212 B CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf7 C SG CYS 29 C CYS 40 1_555 C SG CYS 45 C CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 C SG CYS 158 C CYS 168 1_555 C SG CYS 173 C CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf9 C SG CYS 184 C CYS 191 1_555 C SG CYS 212 C CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf10 D SG CYS 29 D CYS 40 1_555 D SG CYS 45 D CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 D SG CYS 158 D CYS 168 1_555 D SG CYS 173 D CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf12 D SG CYS 184 D CYS 191 1_555 D SG CYS 212 D CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? # _chem_comp.formula 'C7 H8 N2' _chem_comp.formula_weight 120.152 _chem_comp.id BEN _chem_comp.mon_nstd_flag . _chem_comp.name BENZAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BEN doub 70 n y C1 C6 BEN sing 71 n y C1 C BEN sing 72 n n C2 C3 BEN sing 73 n y C2 H2 BEN sing 74 n n C3 C4 BEN doub 75 n y C3 H3 BEN sing 76 n n C4 C5 BEN sing 77 n y C4 H4 BEN sing 78 n n C5 C6 BEN doub 79 n y C5 H5 BEN sing 80 n n C6 H6 BEN sing 81 n n C N1 BEN doub 82 e n C N2 BEN sing 83 n n N1 HN1 BEN sing 84 n n N2 HN21 BEN sing 85 n n N2 HN22 BEN sing 86 n n # _atom_sites.entry_id 7CJ1 _atom_sites.fract_transf_matrix[1][1] 0.020373 _atom_sites.fract_transf_matrix[1][2] 0.011762 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023525 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002984 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 BEN A 1 1001 1001 BEN BEN . F 2 BEN B 1 1001 1001 BEN BEN . G 2 BEN C 1 1001 1001 BEN BEN . H 2 BEN D 1 1001 1001 BEN BEN . I 3 HOH A 1 1101 1101 HOH HOH . I 3 HOH A 2 1102 1102 HOH HOH . I 3 HOH A 3 1103 1103 HOH HOH . I 3 HOH A 4 1104 1104 HOH HOH . I 3 HOH A 5 1105 1105 HOH HOH . I 3 HOH A 6 1106 1106 HOH HOH . I 3 HOH A 7 1107 1107 HOH HOH . I 3 HOH A 8 1108 1108 HOH HOH . I 3 HOH A 9 1109 1109 HOH HOH . I 3 HOH A 10 1110 1110 HOH HOH . I 3 HOH A 11 1111 1111 HOH HOH . I 3 HOH A 12 1112 1112 HOH HOH . I 3 HOH A 13 1113 1113 HOH HOH . I 3 HOH A 14 1114 1114 HOH HOH . I 3 HOH A 15 1115 1115 HOH HOH . I 3 HOH A 16 1116 1116 HOH HOH . I 3 HOH A 17 1117 1117 HOH HOH . I 3 HOH A 18 1118 1118 HOH HOH . I 3 HOH A 19 1119 1119 HOH HOH . I 3 HOH A 20 1120 1120 HOH HOH . I 3 HOH A 21 1121 1121 HOH HOH . I 3 HOH A 22 1122 1122 HOH HOH . I 3 HOH A 23 1123 1123 HOH HOH . I 3 HOH A 24 1124 1124 HOH HOH . I 3 HOH A 25 1125 1125 HOH HOH . I 3 HOH A 26 1126 1126 HOH HOH . I 3 HOH A 27 1127 1127 HOH HOH . I 3 HOH A 28 1128 1128 HOH HOH . I 3 HOH A 29 1129 1129 HOH HOH . I 3 HOH A 30 1130 1130 HOH HOH . I 3 HOH A 31 1131 1131 HOH HOH . I 3 HOH A 32 1132 1132 HOH HOH . I 3 HOH A 33 1133 1133 HOH HOH . I 3 HOH A 34 1134 1134 HOH HOH . I 3 HOH A 35 1135 1135 HOH HOH . I 3 HOH A 36 1136 1136 HOH HOH . I 3 HOH A 37 1137 1137 HOH HOH . I 3 HOH A 38 1138 1138 HOH HOH . I 3 HOH A 39 1139 1139 HOH HOH . I 3 HOH A 40 1140 1140 HOH HOH . I 3 HOH A 41 1141 1141 HOH HOH . I 3 HOH A 42 1142 1142 HOH HOH . I 3 HOH A 43 1143 1143 HOH HOH . I 3 HOH A 44 1144 1144 HOH HOH . I 3 HOH A 45 1145 1145 HOH HOH . I 3 HOH A 46 1146 1146 HOH HOH . I 3 HOH A 47 1147 1147 HOH HOH . I 3 HOH A 48 1148 1148 HOH HOH . I 3 HOH A 49 1149 1149 HOH HOH . J 3 HOH B 1 1101 1101 HOH HOH . J 3 HOH B 2 1102 1107 HOH HOH . J 3 HOH B 3 1103 1102 HOH HOH . J 3 HOH B 4 1104 1103 HOH HOH . J 3 HOH B 5 1105 1104 HOH HOH . J 3 HOH B 6 1106 1105 HOH HOH . J 3 HOH B 7 1107 1106 HOH HOH . J 3 HOH B 8 1108 1108 HOH HOH . J 3 HOH B 9 1109 1109 HOH HOH . J 3 HOH B 10 1110 1110 HOH HOH . J 3 HOH B 11 1111 1111 HOH HOH . J 3 HOH B 12 1112 1112 HOH HOH . J 3 HOH B 13 1113 1113 HOH HOH . J 3 HOH B 14 1114 1114 HOH HOH . J 3 HOH B 15 1115 1115 HOH HOH . J 3 HOH B 16 1116 1116 HOH HOH . J 3 HOH B 17 1117 1117 HOH HOH . J 3 HOH B 18 1118 1118 HOH HOH . J 3 HOH B 19 1119 1119 HOH HOH . J 3 HOH B 20 1120 1120 HOH HOH . J 3 HOH B 21 1121 1121 HOH HOH . J 3 HOH B 22 1122 1122 HOH HOH . J 3 HOH B 23 1123 1123 HOH HOH . J 3 HOH B 24 1124 1124 HOH HOH . J 3 HOH B 25 1125 1125 HOH HOH . J 3 HOH B 26 1126 1126 HOH HOH . J 3 HOH B 27 1127 1127 HOH HOH . J 3 HOH B 28 1128 1128 HOH HOH . J 3 HOH B 29 1129 1129 HOH HOH . J 3 HOH B 30 1130 1130 HOH HOH . J 3 HOH B 31 1131 1131 HOH HOH . J 3 HOH B 32 1132 1132 HOH HOH . J 3 HOH B 33 1133 1133 HOH HOH . J 3 HOH B 34 1134 1134 HOH HOH . J 3 HOH B 35 1135 1135 HOH HOH . J 3 HOH B 36 1136 1136 HOH HOH . J 3 HOH B 37 1137 1137 HOH HOH . J 3 HOH B 38 1138 1138 HOH HOH . J 3 HOH B 39 1139 1139 HOH HOH . J 3 HOH B 40 1140 1140 HOH HOH . J 3 HOH B 41 1141 1141 HOH HOH . J 3 HOH B 42 1142 1142 HOH HOH . J 3 HOH B 43 1143 1143 HOH HOH . J 3 HOH B 44 1144 1144 HOH HOH . J 3 HOH B 45 1145 1145 HOH HOH . J 3 HOH B 46 1146 1146 HOH HOH . J 3 HOH B 47 1147 1147 HOH HOH . J 3 HOH B 48 1148 1148 HOH HOH . J 3 HOH B 49 1149 1149 HOH HOH . K 3 HOH C 1 1101 1101 HOH HOH . K 3 HOH C 2 1102 1102 HOH HOH . K 3 HOH C 3 1103 1103 HOH HOH . K 3 HOH C 4 1104 1104 HOH HOH . K 3 HOH C 5 1105 1105 HOH HOH . K 3 HOH C 6 1106 1106 HOH HOH . K 3 HOH C 7 1107 1107 HOH HOH . K 3 HOH C 8 1108 1108 HOH HOH . K 3 HOH C 9 1109 1109 HOH HOH . K 3 HOH C 10 1110 1110 HOH HOH . K 3 HOH C 11 1111 1111 HOH HOH . K 3 HOH C 12 1112 1112 HOH HOH . K 3 HOH C 13 1113 1113 HOH HOH . K 3 HOH C 14 1114 1114 HOH HOH . L 3 HOH D 1 1101 1101 HOH HOH . L 3 HOH D 2 1102 1102 HOH HOH . L 3 HOH D 3 1103 1103 HOH HOH . L 3 HOH D 4 1104 1104 HOH HOH . L 3 HOH D 5 1105 1105 HOH HOH . L 3 HOH D 6 1106 1106 HOH HOH . L 3 HOH D 7 1107 1107 HOH HOH . L 3 HOH D 8 1108 1108 HOH HOH . L 3 HOH D 9 1109 1109 HOH HOH . L 3 HOH D 10 1110 1110 HOH HOH . L 3 HOH D 11 1111 1111 HOH HOH . L 3 HOH D 12 1112 1112 HOH HOH . L 3 HOH D 13 1113 1113 HOH HOH . L 3 HOH D 14 1114 1114 HOH HOH . L 3 HOH D 15 1115 1115 HOH HOH . L 3 HOH D 16 1116 1116 HOH HOH . L 3 HOH D 17 1117 1117 HOH HOH . L 3 HOH D 18 1118 1118 HOH HOH . L 3 HOH D 19 1119 1119 HOH HOH . L 3 HOH D 20 1120 1120 HOH HOH . L 3 HOH D 21 1121 1121 HOH HOH . L 3 HOH D 22 1122 1122 HOH HOH . L 3 HOH D 23 1123 1123 HOH HOH . L 3 HOH D 24 1124 1124 HOH HOH . L 3 HOH D 25 1125 1125 HOH HOH . L 3 HOH D 26 1126 1126 HOH HOH . L 3 HOH D 27 1127 1127 HOH HOH . L 3 HOH D 28 1128 1128 HOH HOH . L 3 HOH D 29 1129 1129 HOH HOH . L 3 HOH D 30 1130 1130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BEN . . . H 2 -22.632 -24.196 65.142 1 15.37 ? C1 BEN 1001 D 1 HETATM 2 C C2 BEN . . . H 2 -22.873 -24.01 63.778 1 15.56 ? C2 BEN 1001 D 1 HETATM 3 C C3 BEN . . . H 2 -21.886 -24.317 62.841 1 15.88 ? C3 BEN 1001 D 1 HETATM 4 C C4 BEN . . . H 2 -20.652 -24.812 63.271 1 16.19 ? C4 BEN 1001 D 1 HETATM 5 C C5 BEN . . . H 2 -20.406 -24.997 64.632 1 15.83 ? C5 BEN 1001 D 1 HETATM 6 C C6 BEN . . . H 2 -21.396 -24.69 65.564 1 15.42 ? C6 BEN 1001 D 1 HETATM 7 C C BEN . . . H 2 -23.624 -23.884 66.086 1 15.43 ? C BEN 1001 D 1 HETATM 8 N N1 BEN . . . H 2 -24.862 -23.595 65.726 1 15.38 ? N1 BEN 1001 D 1 HETATM 9 N N2 BEN . . . H 2 -23.357 -23.864 67.379 1 15.47 ? N2 BEN 1001 D 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 48 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 9 #