data_7CJ3 # _model_server_result.job_id Cqqpk5uF3LbiZZ2FJP0xTQ _model_server_result.datetime_utc '2024-11-21 13:48:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cj3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7CJ3 # _exptl.entry_id 7CJ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CJ3 _cell.length_a 65.55 _cell.length_b 74.14 _cell.length_c 117.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CJ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 265 A LYS 296 1_555 C C15 RET . A RET 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? covale ? covale2 B NZ LYS 265 B LYS 296 1_555 K C15 RET . B RET 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 341 n n C1 C6 RET sing 342 n n C1 C16 RET sing 343 n n C1 C17 RET sing 344 n n C2 C3 RET sing 345 n n C2 H21 RET sing 346 n n C2 H22 RET sing 347 n n C3 C4 RET sing 348 n n C3 H31 RET sing 349 n n C3 H32 RET sing 350 n n C4 C5 RET sing 351 n n C4 H41 RET sing 352 n n C4 H42 RET sing 353 n n C5 C6 RET doub 354 n n C5 C18 RET sing 355 n n C6 C7 RET sing 356 n n C7 C8 RET doub 357 e n C7 H7 RET sing 358 n n C8 C9 RET sing 359 n n C8 H8 RET sing 360 n n C9 C10 RET doub 361 e n C9 C19 RET sing 362 n n C10 C11 RET sing 363 n n C10 H10 RET sing 364 n n C11 C12 RET doub 365 e n C11 H11 RET sing 366 n n C12 C13 RET sing 367 n n C12 H12 RET sing 368 n n C13 C14 RET doub 369 e n C13 C20 RET sing 370 n n C14 C15 RET sing 371 n n C14 H14 RET sing 372 n n C15 O1 RET doub 373 n n C15 H15 RET sing 374 n n C16 H161 RET sing 375 n n C16 H162 RET sing 376 n n C16 H163 RET sing 377 n n C17 H171 RET sing 378 n n C17 H172 RET sing 379 n n C17 H173 RET sing 380 n n C18 H181 RET sing 381 n n C18 H182 RET sing 382 n n C18 H183 RET sing 383 n n C19 H191 RET sing 384 n n C19 H192 RET sing 385 n n C19 H193 RET sing 386 n n C20 H201 RET sing 387 n n C20 H202 RET sing 388 n n C20 H203 RET sing 389 n n # _atom_sites.entry_id 7CJ3 _atom_sites.fract_transf_matrix[1][1] 0.015256 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008519 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RET A 1 401 401 RET RET . D 3 OLC A 1 402 1 OLC OLC . E 3 OLC A 1 403 3 OLC OLC . F 3 OLC A 1 404 5 OLC OLC . G 3 OLC A 1 405 6 OLC OLC . H 3 OLC A 1 406 7 OLC OLC . I 3 OLC A 1 407 8 OLC OLC . J 3 OLC A 1 408 14 OLC OLC . K 2 RET B 1 401 401 RET RET . L 3 OLC B 1 402 2 OLC OLC . M 3 OLC B 1 403 4 OLC OLC . N 3 OLC B 1 404 9 OLC OLC . O 3 OLC B 1 405 10 OLC OLC . P 3 OLC B 1 406 11 OLC OLC . Q 3 OLC B 1 407 12 OLC OLC . R 3 OLC B 1 408 13 OLC OLC . S 4 HOH A 1 501 7 HOH HOH . S 4 HOH A 2 502 12 HOH HOH . S 4 HOH A 3 503 13 HOH HOH . S 4 HOH A 4 504 1 HOH HOH . S 4 HOH A 5 505 10 HOH HOH . S 4 HOH A 6 506 16 HOH HOH . S 4 HOH A 7 507 9 HOH HOH . T 4 HOH B 1 501 11 HOH HOH . T 4 HOH B 2 502 4 HOH HOH . T 4 HOH B 3 503 8 HOH HOH . T 4 HOH B 4 504 15 HOH HOH . T 4 HOH B 5 505 5 HOH HOH . T 4 HOH B 6 506 2 HOH HOH . T 4 HOH B 7 507 6 HOH HOH . T 4 HOH B 8 508 3 HOH HOH . T 4 HOH B 9 509 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . C 2 -15.437 -7.177 -4.086 1 30.89 ? C1 RET 401 A 1 HETATM 2 C C2 RET . . . C 2 -14.592 -7.509 -5.322 1 32.71 ? C2 RET 401 A 1 HETATM 3 C C3 RET . . . C 2 -14.208 -8.932 -5.43 1 32.71 ? C3 RET 401 A 1 HETATM 4 C C4 RET . . . C 2 -13.453 -9.33 -4.181 1 32.34 ? C4 RET 401 A 1 HETATM 5 C C5 RET . . . C 2 -14.206 -9.015 -2.926 1 30.75 ? C5 RET 401 A 1 HETATM 6 C C6 RET . . . C 2 -15.168 -8.063 -2.875 1 30.13 ? C6 RET 401 A 1 HETATM 7 C C7 RET . . . C 2 -15.98 -7.889 -1.656 1 29.17 ? C7 RET 401 A 1 HETATM 8 C C8 RET . . . C 2 -16.836 -6.875 -1.36 1 29.16 ? C8 RET 401 A 1 HETATM 9 C C9 RET . . . C 2 -17.37 -6.547 -0.115 1 32.12 ? C9 RET 401 A 1 HETATM 10 C C10 RET . . . C 2 -18.229 -5.411 0.085 1 33.5 ? C10 RET 401 A 1 HETATM 11 C C11 RET . . . C 2 -19.024 -5.039 1.191 1 33.32 ? C11 RET 401 A 1 HETATM 12 C C12 RET . . . C 2 -19.844 -3.904 1.292 1 32.63 ? C12 RET 401 A 1 HETATM 13 C C13 RET . . . C 2 -20.456 -3.339 2.427 1 33.59 ? C13 RET 401 A 1 HETATM 14 C C14 RET . . . C 2 -21.149 -2.107 2.37 1 35.63 ? C14 RET 401 A 1 HETATM 15 C C15 RET . . . C 2 -21.663 -1.302 3.494 1 37.94 ? C15 RET 401 A 1 HETATM 16 C C16 RET . . . C 2 -15.074 -5.72 -3.741 1 33.55 ? C16 RET 401 A 1 HETATM 17 C C17 RET . . . C 2 -16.924 -7.258 -4.495 1 28.52 ? C17 RET 401 A 1 HETATM 18 C C18 RET . . . C 2 -13.79 -9.896 -1.78 1 32.89 ? C18 RET 401 A 1 HETATM 19 C C19 RET . . . C 2 -17.051 -7.399 1.053 1 33.73 ? C19 RET 401 A 1 HETATM 20 C C20 RET . . . C 2 -20.355 -4.113 3.698 1 37.99 ? C20 RET 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #