data_7CJ3 # _model_server_result.job_id b6gpK8Lss6J6F_JwJUwWAg _model_server_result.datetime_utc '2024-11-21 14:36:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cj3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":405}' # _entry.id 7CJ3 # _exptl.entry_id 7CJ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CJ3 _cell.length_a 65.55 _cell.length_b 74.14 _cell.length_c 117.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CJ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 265 A LYS 296 1_555 C C15 RET . A RET 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? covale ? covale2 B NZ LYS 265 B LYS 296 1_555 K C15 RET . B RET 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 237 n n C10 C9 OLC doub 238 n n C10 C11 OLC sing 239 n n C9 C8 OLC sing 240 n n C17 C16 OLC sing 241 z n C11 C12 OLC sing 242 n n C8 C7 OLC sing 243 n n C24 C22 OLC sing 244 n n C24 O25 OLC sing 245 n n C16 C15 OLC sing 246 n n C12 C13 OLC sing 247 n n C7 C6 OLC sing 248 n n C15 C14 OLC sing 249 n n C13 C14 OLC sing 250 n n C6 C5 OLC sing 251 n n C5 C4 OLC sing 252 n n C4 C3 OLC sing 253 n n C3 C2 OLC sing 254 n n C2 C1 OLC sing 255 n n C21 C22 OLC sing 256 n n C21 O20 OLC sing 257 n n C1 O19 OLC doub 258 n n C1 O20 OLC sing 259 n n C22 O23 OLC sing 260 n n C18 H18 OLC sing 261 n n C18 H18A OLC sing 262 n n C18 H18B OLC sing 263 n n C10 H10 OLC sing 264 n n C9 H9 OLC sing 265 n n C17 H17 OLC sing 266 n n C17 H17A OLC sing 267 n n C11 H11 OLC sing 268 n n C11 H11A OLC sing 269 n n C8 H8 OLC sing 270 n n C8 H8A OLC sing 271 n n C24 H24 OLC sing 272 n n C24 H24A OLC sing 273 n n C16 H16 OLC sing 274 n n C16 H16A OLC sing 275 n n C12 H12 OLC sing 276 n n C12 H12A OLC sing 277 n n C7 H7 OLC sing 278 n n C7 H7A OLC sing 279 n n C15 H15 OLC sing 280 n n C15 H15A OLC sing 281 n n C13 H13 OLC sing 282 n n C13 H13A OLC sing 283 n n C6 H6 OLC sing 284 n n C6 H6A OLC sing 285 n n C14 H14 OLC sing 286 n n C14 H14A OLC sing 287 n n C5 H5 OLC sing 288 n n C5 H5A OLC sing 289 n n C4 H4 OLC sing 290 n n C4 H4A OLC sing 291 n n C3 H3 OLC sing 292 n n C3 H3A OLC sing 293 n n C2 H2 OLC sing 294 n n C2 H2A OLC sing 295 n n C21 H21 OLC sing 296 n n C21 H21A OLC sing 297 n n C22 H22 OLC sing 298 n n O25 HO25 OLC sing 299 n n O23 HO23 OLC sing 300 n n # _atom_sites.entry_id 7CJ3 _atom_sites.fract_transf_matrix[1][1] 0.015256 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008519 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RET A 1 401 401 RET RET . D 3 OLC A 1 402 1 OLC OLC . E 3 OLC A 1 403 3 OLC OLC . F 3 OLC A 1 404 5 OLC OLC . G 3 OLC A 1 405 6 OLC OLC . H 3 OLC A 1 406 7 OLC OLC . I 3 OLC A 1 407 8 OLC OLC . J 3 OLC A 1 408 14 OLC OLC . K 2 RET B 1 401 401 RET RET . L 3 OLC B 1 402 2 OLC OLC . M 3 OLC B 1 403 4 OLC OLC . N 3 OLC B 1 404 9 OLC OLC . O 3 OLC B 1 405 10 OLC OLC . P 3 OLC B 1 406 11 OLC OLC . Q 3 OLC B 1 407 12 OLC OLC . R 3 OLC B 1 408 13 OLC OLC . S 4 HOH A 1 501 7 HOH HOH . S 4 HOH A 2 502 12 HOH HOH . S 4 HOH A 3 503 13 HOH HOH . S 4 HOH A 4 504 1 HOH HOH . S 4 HOH A 5 505 10 HOH HOH . S 4 HOH A 6 506 16 HOH HOH . S 4 HOH A 7 507 9 HOH HOH . T 4 HOH B 1 501 11 HOH HOH . T 4 HOH B 2 502 4 HOH HOH . T 4 HOH B 3 503 8 HOH HOH . T 4 HOH B 4 504 15 HOH HOH . T 4 HOH B 5 505 5 HOH HOH . T 4 HOH B 6 506 2 HOH HOH . T 4 HOH B 7 507 6 HOH HOH . T 4 HOH B 8 508 3 HOH HOH . T 4 HOH B 9 509 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . O 3 -65.415 18.317 -3.2 1 77.21 ? C18 OLC 405 B 1 HETATM 2 C C10 OLC . . . O 3 -66.259 16.444 5.147 1 50.81 ? C10 OLC 405 B 1 HETATM 3 C C9 OLC . . . O 3 -66.433 16.156 6.438 1 49.59 ? C9 OLC 405 B 1 HETATM 4 C C17 OLC . . . O 3 -66.585 18.724 -2.317 1 76.68 ? C17 OLC 405 B 1 HETATM 5 C C11 OLC . . . O 3 -65.725 17.75 4.62 1 51.27 ? C11 OLC 405 B 1 HETATM 6 C C8 OLC . . . O 3 -66.153 17.121 7.553 1 49.48 ? C8 OLC 405 B 1 HETATM 7 C C24 OLC . . . O 3 -70.751 20.484 14.293 1 85.4 ? C24 OLC 405 B 1 HETATM 8 C C16 OLC . . . O 3 -66.45 18.063 -0.939 1 84.3 ? C16 OLC 405 B 1 HETATM 9 C C12 OLC . . . O 3 -66.209 17.929 3.184 1 59.89 ? C12 OLC 405 B 1 HETATM 10 C C7 OLC . . . O 3 -66.343 16.464 8.927 1 50.24 ? C7 OLC 405 B 1 HETATM 11 C C15 OLC . . . O 3 -66.694 19.013 0.251 1 82.96 ? C15 OLC 405 B 1 HETATM 12 C C13 OLC . . . O 3 -65.103 18.14 2.141 1 68.37 ? C13 OLC 405 B 1 HETATM 13 C C6 OLC . . . O 3 -66.632 17.579 9.923 1 55.53 ? C6 OLC 405 B 1 HETATM 14 C C14 OLC . . . O 3 -65.44 19.255 1.129 1 76.37 ? C14 OLC 405 B 1 HETATM 15 C C5 OLC . . . O 3 -66.135 17.341 11.337 1 61.12 ? C5 OLC 405 B 1 HETATM 16 C C4 OLC . . . O 3 -66.757 16.095 11.917 1 68.93 ? C4 OLC 405 B 1 HETATM 17 C C3 OLC . . . O 3 -68.266 16.171 12.198 1 84.43 ? C3 OLC 405 B 1 HETATM 18 C C2 OLC . . . O 3 -68.659 17.285 13.188 1 96.34 ? C2 OLC 405 B 1 HETATM 19 C C21 OLC . . . O 3 -70.911 18.469 15.781 1 87.13 ? C21 OLC 405 B 1 HETATM 20 C C1 OLC . . . O 3 -69.909 16.942 13.995 1 96.5 ? C1 OLC 405 B 1 HETATM 21 C C22 OLC . . . O 3 -70.224 19.828 15.579 1 85.48 ? C22 OLC 405 B 1 HETATM 22 O O19 OLC . . . O 3 -70.806 16.277 13.504 1 101.75 ? O19 OLC 405 B 1 HETATM 23 O O25 OLC . . . O 3 -69.689 21.076 13.534 1 83.96 ? O25 OLC 405 B 1 HETATM 24 O O23 OLC . . . O 3 -70.432 20.68 16.731 1 74.62 ? O23 OLC 405 B 1 HETATM 25 O O20 OLC . . . O 3 -70.061 17.391 15.38 1 90.89 ? O20 OLC 405 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 25 #