data_7CJD # _model_server_result.job_id IvgNfaZFqBVG_DRwhv0uEQ _model_server_result.datetime_utc '2024-11-21 09:09:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cjd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 7CJD # _exptl.entry_id 7CJD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.87 _cell.angle_gamma 90 _cell.entry_id 7CJD _cell.length_a 169.018 _cell.length_b 108.626 _cell.length_c 100.265 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CJD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 271 D CYS 270 1_555 C SG CYS 271 B CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf2 B SG CYS 271 A CYS 270 1_555 D SG CYS 271 C CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc1 A SG CYS 190 D CYS 189 1_555 E ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc2 A SG CYS 225 D CYS 224 1_555 E ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc3 A SG CYS 227 D CYS 226 1_555 E ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc4 B SG CYS 225 A CYS 224 1_555 F ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc5 B SG CYS 227 A CYS 226 1_555 F ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc6 C SG CYS 190 B CYS 189 1_555 H ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc7 C SG CYS 193 B CYS 192 1_555 H ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc8 C SG CYS 225 B CYS 224 1_555 H ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? metalc ? metalc9 C SG CYS 227 B CYS 226 1_555 H ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc10 D O LYS 191 C LYS 190 1_555 I ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc11 D SG CYS 227 C CYS 226 1_555 I ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7CJD _atom_sites.fract_transf_matrix[1][1] 0.005917 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003263 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009206 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011389 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN D 1 501 501 ZN ZN . F 2 ZN A 1 501 501 ZN ZN . G 3 EDO A 1 502 601 EDO EDO . H 2 ZN B 1 501 501 ZN ZN . I 2 ZN C 1 501 501 ZN ZN . J 4 HOH D 1 601 105 HOH HOH . J 4 HOH D 2 602 6 HOH HOH . J 4 HOH D 3 603 70 HOH HOH . J 4 HOH D 4 604 93 HOH HOH . J 4 HOH D 5 605 19 HOH HOH . J 4 HOH D 6 606 45 HOH HOH . J 4 HOH D 7 607 41 HOH HOH . J 4 HOH D 8 608 49 HOH HOH . J 4 HOH D 9 609 53 HOH HOH . J 4 HOH D 10 610 9 HOH HOH . J 4 HOH D 11 611 89 HOH HOH . J 4 HOH D 12 612 20 HOH HOH . J 4 HOH D 13 613 35 HOH HOH . J 4 HOH D 14 614 1 HOH HOH . K 4 HOH A 1 601 42 HOH HOH . K 4 HOH A 2 602 28 HOH HOH . K 4 HOH A 3 603 22 HOH HOH . K 4 HOH A 4 604 10 HOH HOH . K 4 HOH A 5 605 13 HOH HOH . K 4 HOH A 6 606 71 HOH HOH . K 4 HOH A 7 607 5 HOH HOH . K 4 HOH A 8 608 4 HOH HOH . K 4 HOH A 9 609 14 HOH HOH . K 4 HOH A 10 610 11 HOH HOH . K 4 HOH A 11 611 3 HOH HOH . K 4 HOH A 12 612 101 HOH HOH . K 4 HOH A 13 613 103 HOH HOH . K 4 HOH A 14 614 86 HOH HOH . K 4 HOH A 15 615 55 HOH HOH . L 4 HOH B 1 601 73 HOH HOH . L 4 HOH B 2 602 57 HOH HOH . L 4 HOH B 3 603 17 HOH HOH . L 4 HOH B 4 604 59 HOH HOH . L 4 HOH B 5 605 54 HOH HOH . M 4 HOH C 1 601 23 HOH HOH . M 4 HOH C 2 602 34 HOH HOH . M 4 HOH C 3 603 36 HOH HOH . M 4 HOH C 4 604 8 HOH HOH . M 4 HOH C 5 605 26 HOH HOH . M 4 HOH C 6 606 31 HOH HOH . M 4 HOH C 7 607 32 HOH HOH . M 4 HOH C 8 608 43 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 2 _atom_site.Cartn_x 58.412 _atom_site.Cartn_y 32.265 _atom_site.Cartn_z 18.019 _atom_site.occupancy 0 _atom_site.B_iso_or_equiv 106.63 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 401 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #