data_7CJM # _model_server_result.job_id Gup-Uqmid5rnoOvuGSs8Sg _model_server_result.datetime_utc '2024-11-08 13:36:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cjm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7CJM # _exptl.entry_id 7CJM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 304.386 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-amino-2-methyl-N-[(1R)-1-naphthalen-1-ylethyl]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CJM _cell.length_a 112.294 _cell.length_b 112.294 _cell.length_c 220.379 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CJM _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 190 B CYS 189 1_555 A SG CYS 225 B CYS 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? metalc ? metalc1 A ND1 HIS 90 B HIS 89 1_555 D ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc2 A OD1 ASP 109 B ASP 108 1_555 D ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc3 A OD2 ASP 109 B ASP 108 1_555 D ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc4 A SG CYS 193 B CYS 192 1_555 E ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc5 A SG CYS 225 B CYS 224 1_555 E ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? # _chem_comp.formula 'C20 H20 N2 O' _chem_comp.formula_weight 304.386 _chem_comp.id TTT _chem_comp.mon_nstd_flag . _chem_comp.name 5-amino-2-methyl-N-[(1R)-1-naphthalen-1-ylethyl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C3 TTT sing 332 n n C1 O7 TTT doub 333 n n C1 N2 TTT sing 334 n n C3 C10 TTT doub 335 n y C3 C13 TTT sing 336 n y C8 C11 TTT doub 337 n y C8 C14 TTT sing 338 n y C8 C5 TTT sing 339 n y C9 C12 TTT doub 340 n y C9 C4 TTT sing 341 n y C10 C16 TTT sing 342 n n C10 C17 TTT sing 343 n y C11 C12 TTT sing 344 n y C11 C18 TTT sing 345 n y C13 C19 TTT doub 346 n y C14 C20 TTT doub 347 n y C19 C21 TTT sing 348 n y C19 N01 TTT sing 349 n n C20 C22 TTT sing 350 n y C21 C17 TTT doub 351 n y C22 C18 TTT doub 352 n y N2 C6 TTT sing 353 n n C6 C01 TTT sing 354 n n C6 C5 TTT sing 355 n n C5 C4 TTT doub 356 n y C9 H9 TTT sing 357 n n C12 H12 TTT sing 358 n n C13 H13 TTT sing 359 n n C14 H14 TTT sing 360 n n C16 H16 TTT sing 361 n n C16 H16A TTT sing 362 n n C16 H16B TTT sing 363 n n C20 H20 TTT sing 364 n n C21 H21 TTT sing 365 n n C22 H22 TTT sing 366 n n C17 H17 TTT sing 367 n n N01 HN01 TTT sing 368 n n N01 HN0A TTT sing 369 n n N2 HN2 TTT sing 370 n n C6 H6 TTT sing 371 n n C01 H01 TTT sing 372 n n C01 H01A TTT sing 373 n n C01 H01B TTT sing 374 n n C18 H18 TTT sing 375 n n C4 H4 TTT sing 376 n n # _atom_sites.entry_id 7CJM _atom_sites.fract_transf_matrix[1][1] 0.008905 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008905 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004538 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TTT B 1 401 401 TTT UNL . C 3 ZN B 1 402 1 ZN ZN . D 3 ZN B 1 403 2 ZN ZN . E 3 ZN B 1 404 3 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TTT . . . B 2 7.365 25.401 0.309 1 27.45 ? C1 TTT 401 B 1 HETATM 2 C C3 TTT . . . B 2 7.445 23.905 0.267 1 26.57 ? C3 TTT 401 B 1 HETATM 3 C C8 TTT . . . B 2 5.015 28.5 -1.041 1 24.98 ? C8 TTT 401 B 1 HETATM 4 C C9 TTT . . . B 2 2.437 27.925 -0.087 1 20.73 ? C9 TTT 401 B 1 HETATM 5 C C10 TTT . . . B 2 8.601 23.236 0.69 1 21.7 ? C10 TTT 401 B 1 HETATM 6 C C11 TTT . . . B 2 3.86 28.893 -1.775 1 21.53 ? C11 TTT 401 B 1 HETATM 7 C C12 TTT . . . B 2 2.578 28.585 -1.263 1 23.14 ? C12 TTT 401 B 1 HETATM 8 C C13 TTT . . . B 2 6.33 23.187 -0.156 1 25.74 ? C13 TTT 401 B 1 HETATM 9 C C14 TTT . . . B 2 6.285 28.828 -1.585 1 27.3 ? C14 TTT 401 B 1 HETATM 10 C C16 TTT . . . B 2 9.83 23.959 1.181 1 22.86 ? C16 TTT 401 B 1 HETATM 11 C C19 TTT . . . B 2 6.359 21.795 -0.205 1 20.16 ? C19 TTT 401 B 1 HETATM 12 C C20 TTT . . . B 2 6.399 29.492 -2.77 1 24.84 ? C20 TTT 401 B 1 HETATM 13 C C21 TTT . . . B 2 7.514 21.131 0.205 1 19.93 ? C21 TTT 401 B 1 HETATM 14 C C22 TTT . . . B 2 5.254 29.871 -3.484 1 21.42 ? C22 TTT 401 B 1 HETATM 15 O O7 TTT . . . B 2 8.228 26.105 -0.213 1 22.52 ? O7 TTT 401 B 1 HETATM 16 C C17 TTT . . . B 2 8.613 21.845 0.643 1 21.96 ? C17 TTT 401 B 1 HETATM 17 N N01 TTT . . . B 2 5.254 21.083 -0.646 1 20.12 ? N01 TTT 401 B 1 HETATM 18 N N2 TTT . . . B 2 6.277 25.924 0.892 1 29.39 ? N2 TTT 401 B 1 HETATM 19 C C6 TTT . . . B 2 6.055 27.371 1.002 1 26.49 ? C6 TTT 401 B 1 HETATM 20 C C01 TTT . . . B 2 5.969 27.77 2.471 1 22.09 ? C01 TTT 401 B 1 HETATM 21 C C5 TTT . . . B 2 4.843 27.809 0.197 1 28.08 ? C5 TTT 401 B 1 HETATM 22 C C18 TTT . . . B 2 4.018 29.581 -3.001 1 20.38 ? C18 TTT 401 B 1 HETATM 23 C C4 TTT . . . B 2 3.575 27.536 0.641 1 25.63 ? C4 TTT 401 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #