data_7CJT # _model_server_result.job_id itDepmdkKLat-jutHvCygw _model_server_result.datetime_utc '2024-11-26 02:09:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cjt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 7CJT # _exptl.entry_id 7CJT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 469.578 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[[(3~{R},5~{R})-1-methyl-5-(4-phenylmethoxyphenyl)piperidin-3-yl]amino]-3-prop-2-enyl-5~{H}-pyrrolo[3,2-d]pyrimidin-4-one _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.93 _cell.angle_gamma 90 _cell.entry_id 7CJT _cell.length_a 83.335 _cell.length_b 69.214 _cell.length_c 110.124 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CJT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G 3 1 D,H,K 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C28 H31 N5 O2' _chem_comp.formula_weight 469.578 _chem_comp.id G09 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[[(3~{R},5~{R})-1-methyl-5-(4-phenylmethoxyphenyl)piperidin-3-yl]amino]-3-prop-2-enyl-5~{H}-pyrrolo[3,2-d]pyrimidin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C05 C06 G09 doub 83 n y C05 N04 G09 sing 84 n y C06 C07 G09 sing 85 n y N04 C03 G09 sing 86 n y C07 C03 G09 doub 87 n y C07 N08 G09 sing 88 n n C03 C02 G09 sing 89 n n N08 C09 G09 doub 90 n n O01 C02 G09 doub 91 n n C02 N32 G09 sing 92 n n C09 N32 G09 sing 93 n n C09 N10 G09 sing 94 n n N32 C33 G09 sing 95 n n C11 N10 G09 sing 96 n n C11 C17 G09 sing 97 n n C11 C12 G09 sing 98 n n C17 N15 G09 sing 99 n n N15 C16 G09 sing 100 n n N15 C14 G09 sing 101 n n C33 C34 G09 sing 102 n n C34 C35 G09 doub 103 n n C13 C12 G09 sing 104 n n C13 C14 G09 sing 105 n n C13 C18 G09 sing 106 n n C19 C18 G09 doub 107 n y C19 C20 G09 sing 108 n y C18 C23 G09 sing 109 n y C20 C21 G09 doub 110 n y C23 C22 G09 doub 111 n y C21 C22 G09 sing 112 n y C21 O24 G09 sing 113 n n C25 O24 G09 sing 114 n n C25 C26 G09 sing 115 n n C26 C31 G09 doub 116 n y C26 C27 G09 sing 117 n y C31 C30 G09 sing 118 n y C27 C28 G09 doub 119 n y C30 C29 G09 doub 120 n y C28 C29 G09 sing 121 n y C13 H131 G09 sing 122 n n C17 H171 G09 sing 123 n n C17 H172 G09 sing 124 n n C20 H201 G09 sing 125 n n C22 H221 G09 sing 126 n n C28 H281 G09 sing 127 n n C05 H051 G09 sing 128 n n C06 H061 G09 sing 129 n n C11 H111 G09 sing 130 n n C12 H121 G09 sing 131 n n C12 H122 G09 sing 132 n n C14 H142 G09 sing 133 n n C14 H141 G09 sing 134 n n C16 H162 G09 sing 135 n n C16 H161 G09 sing 136 n n C16 H163 G09 sing 137 n n C19 H191 G09 sing 138 n n C23 H231 G09 sing 139 n n C25 H251 G09 sing 140 n n C25 H252 G09 sing 141 n n C27 H271 G09 sing 142 n n C29 H291 G09 sing 143 n n C30 H301 G09 sing 144 n n C31 H311 G09 sing 145 n n C33 H332 G09 sing 146 n n C33 H331 G09 sing 147 n n C34 H1 G09 sing 148 n n C35 H2 G09 sing 149 n n C35 H351 G09 sing 150 n n N04 H041 G09 sing 151 n n N10 H101 G09 sing 152 n n # _atom_sites.entry_id 7CJT _atom_sites.fract_transf_matrix[1][1] 0.012 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001886 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014448 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009192 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 G09 D 1 501 4 G09 LIG . F 2 G09 A 1 501 2 G09 LIG . G 2 G09 B 1 501 3 G09 LIG . H 2 G09 C 1 501 1 G09 LIG . I 3 HOH D 1 601 1 HOH HOH . I 3 HOH D 2 602 3 HOH HOH . I 3 HOH D 3 603 2 HOH HOH . I 3 HOH D 4 604 7 HOH HOH . I 3 HOH D 5 605 9 HOH HOH . I 3 HOH D 6 606 15 HOH HOH . I 3 HOH D 7 607 8 HOH HOH . I 3 HOH D 8 608 11 HOH HOH . I 3 HOH D 9 609 10 HOH HOH . I 3 HOH D 10 610 14 HOH HOH . I 3 HOH D 11 611 12 HOH HOH . J 3 HOH A 1 601 6 HOH HOH . J 3 HOH A 2 602 13 HOH HOH . J 3 HOH A 3 603 5 HOH HOH . K 3 HOH C 1 601 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 G09 . . . E 2 -16.559 0.064 1.072 1 37.68 ? C13 G09 501 D 1 HETATM 2 C C17 G09 . . . E 2 -15.4 -2.448 0.583 1 48.46 ? C17 G09 501 D 1 HETATM 3 C C20 G09 . . . E 2 -18.559 3.331 1.437 1 47.1 ? C20 G09 501 D 1 HETATM 4 C C21 G09 . . . E 2 -19.668 3.055 0.687 1 49.93 ? C21 G09 501 D 1 HETATM 5 C C22 G09 . . . E 2 -19.804 1.839 0.059 1 51.89 ? C22 G09 501 D 1 HETATM 6 C C26 G09 . . . E 2 -21.838 5.573 1.747 1 88.34 ? C26 G09 501 D 1 HETATM 7 C C28 G09 . . . E 2 -20.79 7.47 2.79 1 74.66 ? C28 G09 501 D 1 HETATM 8 C C02 G09 . . . E 2 -14.824 -5.811 4.611 1 47.16 ? C02 G09 501 D 1 HETATM 9 C C03 G09 . . . E 2 -13.405 -5.351 4.528 1 36.48 ? C03 G09 501 D 1 HETATM 10 C C05 G09 . . . E 2 -11.236 -5.109 4.738 1 43.64 ? C05 G09 501 D 1 HETATM 11 C C06 G09 . . . E 2 -11.691 -4.054 3.986 1 46.52 ? C06 G09 501 D 1 HETATM 12 C C07 G09 . . . E 2 -13.051 -4.221 3.857 1 40.39 ? C07 G09 501 D 1 HETATM 13 C C09 G09 . . . E 2 -15.403 -3.875 3.287 1 37.18 ? C09 G09 501 D 1 HETATM 14 C C11 G09 . . . E 2 -15.898 -1.901 1.937 1 46.8 ? C11 G09 501 D 1 HETATM 15 C C12 G09 . . . E 2 -17.019 -1.094 1.742 1 51.08 ? C12 G09 501 D 1 HETATM 16 C C14 G09 . . . E 2 -16.165 -0.416 -0.341 1 45.1 ? C14 G09 501 D 1 HETATM 17 C C16 G09 . . . E 2 -15.018 -1.886 -1.475 1 42.5 ? C16 G09 501 D 1 HETATM 18 C C18 G09 . . . E 2 -17.687 1.161 0.953 1 38.53 ? C18 G09 501 D 1 HETATM 19 C C19 G09 . . . E 2 -17.574 2.38 1.583 1 40.44 ? C19 G09 501 D 1 HETATM 20 C C23 G09 . . . E 2 -18.807 0.893 0.204 1 48.63 ? C23 G09 501 D 1 HETATM 21 C C25 G09 . . . E 2 -21.72 4.093 1.393 1 81.66 ? C25 G09 501 D 1 HETATM 22 C C27 G09 . . . E 2 -20.761 6.133 2.421 1 73.1 ? C27 G09 501 D 1 HETATM 23 C C29 G09 . . . E 2 -21.899 8.239 2.451 1 80.85 ? C29 G09 501 D 1 HETATM 24 C C30 G09 . . . E 2 -22.979 7.687 1.756 1 82.95 ? C30 G09 501 D 1 HETATM 25 C C31 G09 . . . E 2 -22.952 6.345 1.396 1 87.87 ? C31 G09 501 D 1 HETATM 26 C C33 G09 . . . E 2 -17.167 -5.455 4.061 1 40.59 ? C33 G09 501 D 1 HETATM 27 C C34 G09 . . . E 2 -17.432 -6.587 3.117 1 41.5 ? C34 G09 501 D 1 HETATM 28 C C35 G09 . . . E 2 -17.857 -7.745 3.604 1 69.26 ? C35 G09 501 D 1 HETATM 29 N N04 G09 . . . E 2 -12.293 -5.881 5.059 1 49.7 ? N04 G09 501 D 1 HETATM 30 N N08 G09 . . . E 2 -14.052 -3.405 3.19 1 31.51 ? N08 G09 501 D 1 HETATM 31 N N10 G09 . . . E 2 -16.383 -3.102 2.649 1 51.52 ? N10 G09 501 D 1 HETATM 32 N N15 G09 . . . E 2 -15.122 -1.402 -0.35 1 41.04 ? N15 G09 501 D 1 HETATM 33 N N32 G09 . . . E 2 -15.797 -5.04 3.972 1 45.24 ? N32 G09 501 D 1 HETATM 34 O O01 G09 . . . E 2 -15.12 -6.796 5.203 1 47.62 ? O01 G09 501 D 1 HETATM 35 O O24 G09 . . . E 2 -20.645 4.036 0.519 1 69.98 ? O24 G09 501 D 1 HETATM 36 H H131 G09 . . . E 2 -15.782 0.425 1.528 1 45.37 ? H131 G09 501 D 1 HETATM 37 H H171 G09 . . . E 2 -16.081 -3.029 0.21 1 58.3 ? H171 G09 501 D 1 HETATM 38 H H172 G09 . . . E 2 -14.589 -2.959 0.731 1 58.3 ? H172 G09 501 D 1 HETATM 39 H H201 G09 . . . E 2 -18.472 4.159 1.853 1 56.67 ? H201 G09 501 D 1 HETATM 40 H H221 G09 . . . E 2 -20.553 1.659 -0.462 1 62.41 ? H221 G09 501 D 1 HETATM 41 H H281 G09 . . . E 2 -20.074 7.849 3.247 1 89.74 ? H281 G09 501 D 1 HETATM 42 H H051 G09 . . . E 2 -10.349 -5.276 4.965 1 52.51 ? H051 G09 501 D 1 HETATM 43 H H061 G09 . . . E 2 -11.177 -3.374 3.615 1 55.96 ? H061 G09 501 D 1 HETATM 44 H H111 G09 . . . E 2 -15.197 -1.442 2.426 1 56.31 ? H111 G09 501 D 1 HETATM 45 H H121 G09 . . . E 2 -17.406 -0.852 2.598 1 61.44 ? H121 G09 501 D 1 HETATM 46 H H122 G09 . . . E 2 -17.671 -1.559 1.194 1 61.44 ? H122 G09 501 D 1 HETATM 47 H H142 G09 . . . E 2 -16.95 -0.795 -0.767 1 54.26 ? H142 G09 501 D 1 HETATM 48 H H141 G09 . . . E 2 -15.868 0.351 -0.855 1 54.26 ? H141 G09 501 D 1 HETATM 49 H H162 G09 . . . E 2 -14.826 -1.182 -2.114 1 51.15 ? H162 G09 501 D 1 HETATM 50 H H161 G09 . . . E 2 -14.297 -2.535 -1.482 1 51.15 ? H161 G09 501 D 1 HETATM 51 H H163 G09 . . . E 2 -15.849 -2.324 -1.716 1 51.15 ? H163 G09 501 D 1 HETATM 52 H H191 G09 . . . E 2 -16.815 2.573 2.086 1 48.67 ? H191 G09 501 D 1 HETATM 53 H H231 G09 . . . E 2 -18.887 0.072 -0.225 1 58.51 ? H231 G09 501 D 1 HETATM 54 H H251 G09 . . . E 2 -21.539 3.568 2.188 1 98.14 ? H251 G09 501 D 1 HETATM 55 H H252 G09 . . . E 2 -22.529 3.783 0.957 1 98.14 ? H252 G09 501 D 1 HETATM 56 H H271 G09 . . . E 2 -20.03 5.605 2.649 1 87.87 ? H271 G09 501 D 1 HETATM 57 H H291 G09 . . . E 2 -21.919 9.138 2.686 1 97.17 ? H291 G09 501 D 1 HETATM 58 H H301 G09 . . . E 2 -23.713 8.215 1.538 1 99.68 ? H301 G09 501 D 1 HETATM 59 H H311 G09 . . . E 2 -23.666 5.963 0.939 1 105.59 ? H311 G09 501 D 1 HETATM 60 H H332 G09 . . . E 2 -17.744 -4.709 3.835 1 48.86 ? H332 G09 501 D 1 HETATM 61 H H331 G09 . . . E 2 -17.356 -5.743 4.968 1 48.86 ? H331 G09 501 D 1 HETATM 62 H H1 G09 . . . E 2 -17.3 -6.48 2.202 1 49.94 ? H1 G09 501 D 1 HETATM 63 H H2 G09 . . . E 2 -18.026 -8.458 3.031 1 83.26 ? H2 G09 501 D 1 HETATM 64 H H351 G09 . . . E 2 -17.986 -7.845 4.52 1 83.26 ? H351 G09 501 D 1 HETATM 65 H H041 G09 . . . E 2 -12.26 -6.603 5.525 1 59.79 ? H041 G09 501 D 1 HETATM 66 H H101 G09 . . . E 2 -17.214 -3.324 2.656 1 61.97 ? H101 G09 501 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 66 #