data_7CJT # _model_server_result.job_id RJ7I1Sj7zEoxqDQ2J0F3Cg _model_server_result.datetime_utc '2024-11-22 16:58:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7cjt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 7CJT # _exptl.entry_id 7CJT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 469.578 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[[(3~{R},5~{R})-1-methyl-5-(4-phenylmethoxyphenyl)piperidin-3-yl]amino]-3-prop-2-enyl-5~{H}-pyrrolo[3,2-d]pyrimidin-4-one _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.93 _cell.angle_gamma 90 _cell.entry_id 7CJT _cell.length_a 83.335 _cell.length_b 69.214 _cell.length_c 110.124 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CJT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G 3 1 D,H,K 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C28 H31 N5 O2' _chem_comp.formula_weight 469.578 _chem_comp.id G09 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[[(3~{R},5~{R})-1-methyl-5-(4-phenylmethoxyphenyl)piperidin-3-yl]amino]-3-prop-2-enyl-5~{H}-pyrrolo[3,2-d]pyrimidin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C05 C06 G09 doub 83 n y C05 N04 G09 sing 84 n y C06 C07 G09 sing 85 n y N04 C03 G09 sing 86 n y C07 C03 G09 doub 87 n y C07 N08 G09 sing 88 n n C03 C02 G09 sing 89 n n N08 C09 G09 doub 90 n n O01 C02 G09 doub 91 n n C02 N32 G09 sing 92 n n C09 N32 G09 sing 93 n n C09 N10 G09 sing 94 n n N32 C33 G09 sing 95 n n C11 N10 G09 sing 96 n n C11 C17 G09 sing 97 n n C11 C12 G09 sing 98 n n C17 N15 G09 sing 99 n n N15 C16 G09 sing 100 n n N15 C14 G09 sing 101 n n C33 C34 G09 sing 102 n n C34 C35 G09 doub 103 n n C13 C12 G09 sing 104 n n C13 C14 G09 sing 105 n n C13 C18 G09 sing 106 n n C19 C18 G09 doub 107 n y C19 C20 G09 sing 108 n y C18 C23 G09 sing 109 n y C20 C21 G09 doub 110 n y C23 C22 G09 doub 111 n y C21 C22 G09 sing 112 n y C21 O24 G09 sing 113 n n C25 O24 G09 sing 114 n n C25 C26 G09 sing 115 n n C26 C31 G09 doub 116 n y C26 C27 G09 sing 117 n y C31 C30 G09 sing 118 n y C27 C28 G09 doub 119 n y C30 C29 G09 doub 120 n y C28 C29 G09 sing 121 n y C13 H131 G09 sing 122 n n C17 H171 G09 sing 123 n n C17 H172 G09 sing 124 n n C20 H201 G09 sing 125 n n C22 H221 G09 sing 126 n n C28 H281 G09 sing 127 n n C05 H051 G09 sing 128 n n C06 H061 G09 sing 129 n n C11 H111 G09 sing 130 n n C12 H121 G09 sing 131 n n C12 H122 G09 sing 132 n n C14 H142 G09 sing 133 n n C14 H141 G09 sing 134 n n C16 H162 G09 sing 135 n n C16 H161 G09 sing 136 n n C16 H163 G09 sing 137 n n C19 H191 G09 sing 138 n n C23 H231 G09 sing 139 n n C25 H251 G09 sing 140 n n C25 H252 G09 sing 141 n n C27 H271 G09 sing 142 n n C29 H291 G09 sing 143 n n C30 H301 G09 sing 144 n n C31 H311 G09 sing 145 n n C33 H332 G09 sing 146 n n C33 H331 G09 sing 147 n n C34 H1 G09 sing 148 n n C35 H2 G09 sing 149 n n C35 H351 G09 sing 150 n n N04 H041 G09 sing 151 n n N10 H101 G09 sing 152 n n # _atom_sites.entry_id 7CJT _atom_sites.fract_transf_matrix[1][1] 0.012 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001886 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014448 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009192 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 G09 D 1 501 4 G09 LIG . F 2 G09 A 1 501 2 G09 LIG . G 2 G09 B 1 501 3 G09 LIG . H 2 G09 C 1 501 1 G09 LIG . I 3 HOH D 1 601 1 HOH HOH . I 3 HOH D 2 602 3 HOH HOH . I 3 HOH D 3 603 2 HOH HOH . I 3 HOH D 4 604 7 HOH HOH . I 3 HOH D 5 605 9 HOH HOH . I 3 HOH D 6 606 15 HOH HOH . I 3 HOH D 7 607 8 HOH HOH . I 3 HOH D 8 608 11 HOH HOH . I 3 HOH D 9 609 10 HOH HOH . I 3 HOH D 10 610 14 HOH HOH . I 3 HOH D 11 611 12 HOH HOH . J 3 HOH A 1 601 6 HOH HOH . J 3 HOH A 2 602 13 HOH HOH . J 3 HOH A 3 603 5 HOH HOH . K 3 HOH C 1 601 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 G09 . . . G 2 -48.056 5.922 -37.452 1 45.56 ? C13 G09 501 B 1 HETATM 2 C C17 G09 . . . G 2 -49.661 5.035 -35.312 1 69.6 ? C17 G09 501 B 1 HETATM 3 C C20 G09 . . . G 2 -46.34 6.78 -40.821 1 45.65 ? C20 G09 501 B 1 HETATM 4 C C21 G09 . . . G 2 -46.661 8.111 -41.031 1 41.88 ? C21 G09 501 B 1 HETATM 5 C C22 G09 . . . G 2 -47.438 8.766 -40.077 1 48.68 ? C22 G09 501 B 1 HETATM 6 C C26 G09 . . . G 2 -46.153 10.166 -44.136 1 61.75 ? C26 G09 501 B 1 HETATM 7 C C28 G09 . . . G 2 -44.35 11.148 -45.415 1 55.84 ? C28 G09 501 B 1 HETATM 8 C C02 G09 . . . G 2 -48.719 6.665 -30.214 1 75.58 ? C02 G09 501 B 1 HETATM 9 C C03 G09 . . . G 2 -48.313 5.206 -30.045 1 54.79 ? C03 G09 501 B 1 HETATM 10 C C05 G09 . . . G 2 -47.758 3.186 -29.31 1 65.21 ? C05 G09 501 B 1 HETATM 11 C C06 G09 . . . G 2 -47.733 3.147 -30.688 1 57.11 ? C06 G09 501 B 1 HETATM 12 C C07 G09 . . . G 2 -48.073 4.411 -31.128 1 62.91 ? C07 G09 501 B 1 HETATM 13 C C09 G09 . . . G 2 -48.6 6.374 -32.653 1 65.47 ? C09 G09 501 B 1 HETATM 14 C C11 G09 . . . G 2 -48.409 5.91 -35.119 1 55.32 ? C11 G09 501 B 1 HETATM 15 C C12 G09 . . . G 2 -48.164 6.721 -36.259 1 57.12 ? C12 G09 501 B 1 HETATM 16 C C14 G09 . . . G 2 -49.447 5.299 -37.652 1 53.92 ? C14 G09 501 B 1 HETATM 17 C C16 G09 . . . G 2 -50.695 3.772 -36.753 1 67.39 ? C16 G09 501 B 1 HETATM 18 C C18 G09 . . . G 2 -47.569 6.741 -38.729 1 43.76 ? C18 G09 501 B 1 HETATM 19 C C19 G09 . . . G 2 -46.786 6.103 -39.687 1 47.56 ? C19 G09 501 B 1 HETATM 20 C C23 G09 . . . G 2 -47.887 8.076 -38.936 1 51.77 ? C23 G09 501 B 1 HETATM 21 C C25 G09 . . . G 2 -46.818 9.888 -42.763 1 67.64 ? C25 G09 501 B 1 HETATM 22 C C27 G09 . . . G 2 -44.988 10.913 -44.199 1 59.15 ? C27 G09 501 B 1 HETATM 23 C C29 G09 . . . G 2 -44.867 10.63 -46.586 1 46.74 ? C29 G09 501 B 1 HETATM 24 C C30 G09 . . . G 2 -46.029 9.874 -46.54 1 62.16 ? C30 G09 501 B 1 HETATM 25 C C31 G09 . . . G 2 -46.666 9.644 -45.324 1 68.04 ? C31 G09 501 B 1 HETATM 26 C C33 G09 . . . G 2 -49.249 8.639 -31.706 1 86.42 ? C33 G09 501 B 1 HETATM 27 C C34 G09 . . . G 2 -50.679 8.911 -31.193 1 100.71 ? C34 G09 501 B 1 HETATM 28 C C35 G09 . . . G 2 -51.121 10.139 -30.929 1 103.05 ? C35 G09 501 B 1 HETATM 29 N N04 G09 . . . G 2 -48.109 4.438 -28.951 1 69.01 ? N04 G09 501 B 1 HETATM 30 N N08 G09 . . . G 2 -48.206 4.978 -32.484 1 72.68 ? N08 G09 501 B 1 HETATM 31 N N10 G09 . . . G 2 -48.703 6.855 -33.994 1 54.42 ? N10 G09 501 B 1 HETATM 32 N N15 G09 . . . G 2 -49.654 4.375 -36.591 1 61.59 ? N15 G09 501 B 1 HETATM 33 N N32 G09 . . . G 2 -48.858 7.236 -31.525 1 77.6 ? N32 G09 501 B 1 HETATM 34 O O01 G09 . . . G 2 -48.919 7.331 -29.253 1 78.35 ? O01 G09 501 B 1 HETATM 35 O O24 G09 . . . G 2 -46.173 8.735 -42.206 1 52.77 ? O24 G09 501 B 1 HETATM 36 H H131 G09 . . . G 2 -47.423 5.207 -37.283 1 54.82 ? H131 G09 501 B 1 HETATM 37 H H171 G09 . . . G 2 -50.45 5.596 -35.251 1 83.66 ? H171 G09 501 B 1 HETATM 38 H H172 G09 . . . G 2 -49.688 4.365 -34.611 1 83.66 ? H172 G09 501 B 1 HETATM 39 H H201 G09 . . . G 2 -45.821 6.33 -41.448 1 54.92 ? H201 G09 501 B 1 HETATM 40 H H221 G09 . . . G 2 -47.666 9.66 -40.198 1 58.57 ? H221 G09 501 B 1 HETATM 41 H H281 G09 . . . G 2 -43.573 11.659 -45.439 1 67.15 ? H281 G09 501 B 1 HETATM 42 H H051 G09 . . . G 2 -47.572 2.478 -28.736 1 78.4 ? H051 G09 501 B 1 HETATM 43 H H061 G09 . . . G 2 -47.51 2.416 -31.218 1 68.67 ? H061 G09 501 B 1 HETATM 44 H H111 G09 . . . G 2 -47.635 5.361 -34.918 1 66.53 ? H111 G09 501 B 1 HETATM 45 H H121 G09 . . . G 2 -47.336 7.208 -36.129 1 68.7 ? H121 G09 501 B 1 HETATM 46 H H122 G09 . . . G 2 -48.896 7.349 -36.364 1 68.7 ? H122 G09 501 B 1 HETATM 47 H H142 G09 . . . G 2 -50.125 5.992 -37.622 1 64.86 ? H142 G09 501 B 1 HETATM 48 H H141 G09 . . . G 2 -49.479 4.834 -38.503 1 64.86 ? H141 G09 501 B 1 HETATM 49 H H162 G09 . . . G 2 -50.67 3.306 -37.603 1 81.02 ? H162 G09 501 B 1 HETATM 50 H H161 G09 . . . G 2 -51.436 4.399 -36.75 1 81.02 ? H161 G09 501 B 1 HETATM 51 H H163 G09 . . . G 2 -50.812 3.13 -36.035 1 81.02 ? H163 G09 501 B 1 HETATM 52 H H191 G09 . . . G 2 -46.561 5.208 -39.572 1 57.22 ? H191 G09 501 B 1 HETATM 53 H H231 G09 . . . G 2 -48.408 8.523 -38.309 1 62.27 ? H231 G09 501 B 1 HETATM 54 H H251 G09 . . . G 2 -46.696 10.651 -42.177 1 81.32 ? H251 G09 501 B 1 HETATM 55 H H252 G09 . . . G 2 -47.764 9.712 -42.884 1 81.32 ? H252 G09 501 B 1 HETATM 56 H H271 G09 . . . G 2 -44.624 11.26 -43.417 1 71.12 ? H271 G09 501 B 1 HETATM 57 H H291 G09 . . . G 2 -44.448 10.797 -47.4 1 56.24 ? H291 G09 501 B 1 HETATM 58 H H301 G09 . . . G 2 -46.389 9.528 -47.324 1 74.74 ? H301 G09 501 B 1 HETATM 59 H H311 G09 . . . G 2 -47.44 9.128 -45.302 1 81.8 ? H311 G09 501 B 1 HETATM 60 H H332 G09 . . . G 2 -49.206 8.859 -32.65 1 103.85 ? H332 G09 501 B 1 HETATM 61 H H331 G09 . . . G 2 -48.627 9.205 -31.222 1 103.85 ? H331 G09 501 B 1 HETATM 62 H H1 G09 . . . G 2 -51.253 8.191 -31.064 1 121 ? H1 G09 501 B 1 HETATM 63 H H2 G09 . . . G 2 -50.561 10.871 -31.052 1 123.8 ? H2 G09 501 B 1 HETATM 64 H H351 G09 . . . G 2 -51.99 10.264 -30.621 1 123.8 ? H351 G09 501 B 1 HETATM 65 H H041 G09 . . . G 2 -48.207 4.705 -28.139 1 82.96 ? H041 G09 501 B 1 HETATM 66 H H101 G09 . . . G 2 -48.929 7.669 -34.153 1 65.45 ? H101 G09 501 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 66 #