data_7CJT
#
_model_server_result.job_id            jo--jUnHs4GaDpo5Sf5kOA 
_model_server_result.datetime_utc      '2024-11-22 16:58:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7cjt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":501}' 
#
_entry.id    7CJT 
#
_exptl.entry_id    7CJT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              469.578 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[[(3~{R},5~{R})-1-methyl-5-(4-phenylmethoxyphenyl)piperidin-3-yl]amino]-3-prop-2-enyl-5~{H}-pyrrolo[3,2-d]pyrimidin-4-one 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.93 
_cell.angle_gamma         90 
_cell.entry_id            7CJT 
_cell.length_a            83.335 
_cell.length_b            69.214 
_cell.length_c            110.124 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7CJT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I 1 1 
B,F,J 2 1 
C,G 3 1 
D,H,K 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C28 H31 N5 O2' 
_chem_comp.formula_weight    469.578 
_chem_comp.id                G09 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[[(3~{R},5~{R})-1-methyl-5-(4-phenylmethoxyphenyl)piperidin-3-yl]amino]-3-prop-2-enyl-5~{H}-pyrrolo[3,2-d]pyrimidin-4-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C05 C06 G09 doub 83 n y 
C05 N04 G09 sing 84 n y 
C06 C07 G09 sing 85 n y 
N04 C03 G09 sing 86 n y 
C07 C03 G09 doub 87 n y 
C07 N08 G09 sing 88 n n 
C03 C02 G09 sing 89 n n 
N08 C09 G09 doub 90 n n 
O01 C02 G09 doub 91 n n 
C02 N32 G09 sing 92 n n 
C09 N32 G09 sing 93 n n 
C09 N10 G09 sing 94 n n 
N32 C33 G09 sing 95 n n 
C11 N10 G09 sing 96 n n 
C11 C17 G09 sing 97 n n 
C11 C12 G09 sing 98 n n 
C17 N15 G09 sing 99 n n 
N15 C16 G09 sing 100 n n 
N15 C14 G09 sing 101 n n 
C33 C34 G09 sing 102 n n 
C34 C35 G09 doub 103 n n 
C13 C12 G09 sing 104 n n 
C13 C14 G09 sing 105 n n 
C13 C18 G09 sing 106 n n 
C19 C18 G09 doub 107 n y 
C19 C20 G09 sing 108 n y 
C18 C23 G09 sing 109 n y 
C20 C21 G09 doub 110 n y 
C23 C22 G09 doub 111 n y 
C21 C22 G09 sing 112 n y 
C21 O24 G09 sing 113 n n 
C25 O24 G09 sing 114 n n 
C25 C26 G09 sing 115 n n 
C26 C31 G09 doub 116 n y 
C26 C27 G09 sing 117 n y 
C31 C30 G09 sing 118 n y 
C27 C28 G09 doub 119 n y 
C30 C29 G09 doub 120 n y 
C28 C29 G09 sing 121 n y 
C13 H131 G09 sing 122 n n 
C17 H171 G09 sing 123 n n 
C17 H172 G09 sing 124 n n 
C20 H201 G09 sing 125 n n 
C22 H221 G09 sing 126 n n 
C28 H281 G09 sing 127 n n 
C05 H051 G09 sing 128 n n 
C06 H061 G09 sing 129 n n 
C11 H111 G09 sing 130 n n 
C12 H121 G09 sing 131 n n 
C12 H122 G09 sing 132 n n 
C14 H142 G09 sing 133 n n 
C14 H141 G09 sing 134 n n 
C16 H162 G09 sing 135 n n 
C16 H161 G09 sing 136 n n 
C16 H163 G09 sing 137 n n 
C19 H191 G09 sing 138 n n 
C23 H231 G09 sing 139 n n 
C25 H251 G09 sing 140 n n 
C25 H252 G09 sing 141 n n 
C27 H271 G09 sing 142 n n 
C29 H291 G09 sing 143 n n 
C30 H301 G09 sing 144 n n 
C31 H311 G09 sing 145 n n 
C33 H332 G09 sing 146 n n 
C33 H331 G09 sing 147 n n 
C34 H1 G09 sing 148 n n 
C35 H2 G09 sing 149 n n 
C35 H351 G09 sing 150 n n 
N04 H041 G09 sing 151 n n 
N10 H101 G09 sing 152 n n 
#
_atom_sites.entry_id                     7CJT 
_atom_sites.fract_transf_matrix[1][1]    0.012 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001886 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014448 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009192 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 G09 D 1 501 4 G09 LIG . 
F 2 G09 A 1 501 2 G09 LIG . 
G 2 G09 B 1 501 3 G09 LIG . 
H 2 G09 C 1 501 1 G09 LIG . 
I 3 HOH D 1 601 1 HOH HOH . 
I 3 HOH D 2 602 3 HOH HOH . 
I 3 HOH D 3 603 2 HOH HOH . 
I 3 HOH D 4 604 7 HOH HOH . 
I 3 HOH D 5 605 9 HOH HOH . 
I 3 HOH D 6 606 15 HOH HOH . 
I 3 HOH D 7 607 8 HOH HOH . 
I 3 HOH D 8 608 11 HOH HOH . 
I 3 HOH D 9 609 10 HOH HOH . 
I 3 HOH D 10 610 14 HOH HOH . 
I 3 HOH D 11 611 12 HOH HOH . 
J 3 HOH A 1 601 6 HOH HOH . 
J 3 HOH A 2 602 13 HOH HOH . 
J 3 HOH A 3 603 5 HOH HOH . 
K 3 HOH C 1 601 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 G09 . . . H 2 -55.722 -21.093 -26.404 1 69.94 ? C13 G09 501 C 1 
HETATM 2 C C17 G09 . . . H 2 -58.099 -22.695 -26.098 1 64.11 ? C17 G09 501 C 1 
HETATM 3 C C20 G09 . . . H 2 -52.478 -19.481 -27.64 1 75.12 ? C20 G09 501 C 1 
HETATM 4 C C21 G09 . . . H 2 -52.12 -20.189 -28.78 1 82.94 ? C21 G09 501 C 1 
HETATM 5 C C22 G09 . . . H 2 -52.937 -21.225 -29.189 1 83.94 ? C22 G09 501 C 1 
HETATM 6 C C26 G09 . . . H 2 -49.29 -18.188 -29.989 1 87.98 ? C26 G09 501 C 1 
HETATM 7 C C28 G09 . . . H 2 -47.777 -16.532 -30.84 1 86.48 ? C28 G09 501 C 1 
HETATM 8 C C02 G09 . . . H 2 -62.852 -19.875 -26.478 1 59.5 ? C02 G09 501 C 1 
HETATM 9 C C03 G09 . . . H 2 -62.694 -19.831 -24.998 1 46.09 ? C03 G09 501 C 1 
HETATM 10 C C05 G09 . . . H 2 -62.99 -19.612 -22.857 1 46.27 ? C05 G09 501 C 1 
HETATM 11 C C06 G09 . . . H 2 -61.677 -19.997 -23.056 1 49.01 ? C06 G09 501 C 1 
HETATM 12 C C07 G09 . . . H 2 -61.509 -20.129 -24.411 1 49.98 ? C07 G09 501 C 1 
HETATM 13 C C09 G09 . . . H 2 -60.493 -20.537 -26.673 1 60.29 ? C09 G09 501 C 1 
HETATM 14 C C11 G09 . . . H 2 -58.101 -21.198 -26.478 1 70.47 ? C11 G09 501 C 1 
HETATM 15 C C12 G09 . . . H 2 -56.919 -20.821 -27.172 1 79.55 ? C12 G09 501 C 1 
HETATM 16 C C14 G09 . . . H 2 -55.693 -22.528 -25.777 1 71.72 ? C14 G09 501 C 1 
HETATM 17 C C16 G09 . . . H 2 -56.892 -24.238 -25.126 1 66.41 ? C16 G09 501 C 1 
HETATM 18 C C18 G09 . . . H 2 -54.441 -20.821 -27.32 1 68.97 ? C18 G09 501 C 1 
HETATM 19 C C19 G09 . . . H 2 -53.616 -19.791 -26.936 1 61.71 ? C19 G09 501 C 1 
HETATM 20 C C23 G09 . . . H 2 -54.09 -21.544 -28.461 1 81.07 ? C23 G09 501 C 1 
HETATM 21 C C25 G09 . . . H 2 -50.357 -18.66 -29.018 1 90.19 ? C25 G09 501 C 1 
HETATM 22 C C27 G09 . . . H 2 -48.742 -16.916 -29.918 1 87.2 ? C27 G09 501 C 1 
HETATM 23 C C29 G09 . . . H 2 -47.384 -17.417 -31.836 1 90.05 ? C29 G09 501 C 1 
HETATM 24 C C30 G09 . . . H 2 -47.939 -18.687 -31.9 1 98.39 ? C30 G09 501 C 1 
HETATM 25 C C31 G09 . . . H 2 -48.896 -19.065 -30.972 1 96.39 ? C31 G09 501 C 1 
HETATM 26 C C33 G09 . . . H 2 -61.933 -20.268 -28.765 1 62.35 ? C33 G09 501 C 1 
HETATM 27 C C34 G09 . . . H 2 -63.34 -20.863 -29.12 1 91.39 ? C34 G09 501 C 1 
HETATM 28 C C35 G09 . . . H 2 -64.483 -20.164 -29.323 1 77.63 ? C35 G09 501 C 1 
HETATM 29 N N04 G09 . . . H 2 -63.593 -19.517 -24.047 1 49.69 ? N04 G09 501 C 1 
HETATM 30 N N08 G09 . . . H 2 -60.361 -20.516 -25.225 1 52.84 ? N08 G09 501 C 1 
HETATM 31 N N10 G09 . . . H 2 -59.295 -20.924 -27.367 1 69.43 ? N10 G09 501 C 1 
HETATM 32 N N15 G09 . . . H 2 -56.949 -23.024 -25.278 1 69.01 ? N15 G09 501 C 1 
HETATM 33 N N32 G09 . . . H 2 -61.745 -20.219 -27.322 1 61.75 ? N32 G09 501 C 1 
HETATM 34 O O01 G09 . . . H 2 -63.928 -19.587 -26.866 1 65.81 ? O01 G09 501 C 1 
HETATM 35 O O24 G09 . . . H 2 -50.956 -19.853 -29.498 1 82.61 ? O24 G09 501 C 1 
HETATM 36 H H131 G09 . . . H 2 -55.699 -20.459 -25.67 1 84.08 ? H131 G09 501 C 1 
HETATM 37 H H171 G09 . . . H 2 -58.073 -23.228 -26.908 1 77.08 ? H171 G09 501 C 1 
HETATM 38 H H172 G09 . . . H 2 -58.909 -22.898 -25.604 1 77.08 ? H172 G09 501 C 1 
HETATM 39 H H201 G09 . . . H 2 -51.942 -18.776 -27.354 1 90.29 ? H201 G09 501 C 1 
HETATM 40 H H221 G09 . . . H 2 -52.717 -21.716 -29.948 1 100.87 ? H221 G09 501 C 1 
HETATM 41 H H281 G09 . . . H 2 -47.404 -15.682 -30.798 1 103.92 ? H281 G09 501 C 1 
HETATM 42 H H051 G09 . . . H 2 -63.391 -19.458 -22.032 1 55.66 ? H051 G09 501 C 1 
HETATM 43 H H061 G09 . . . H 2 -61.034 -20.142 -22.4 1 58.96 ? H061 G09 501 C 1 
HETATM 44 H H111 G09 . . . H 2 -58.174 -20.668 -25.669 1 84.71 ? H111 G09 501 C 1 
HETATM 45 H H121 G09 . . . H 2 -56.959 -19.871 -27.364 1 95.6 ? H121 G09 501 C 1 
HETATM 46 H H122 G09 . . . H 2 -56.875 -21.314 -28.006 1 95.6 ? H122 G09 501 C 1 
HETATM 47 H H142 G09 . . . H 2 -55.059 -22.523 -25.043 1 86.21 ? H142 G09 501 C 1 
HETATM 48 H H141 G09 . . . H 2 -55.375 -23.145 -26.454 1 86.21 ? H141 G09 501 C 1 
HETATM 49 H H162 G09 . . . H 2 -56.175 -24.455 -24.51 1 79.83 ? H162 G09 501 C 1 
HETATM 50 H H161 G09 . . . H 2 -56.722 -24.663 -25.982 1 79.83 ? H161 G09 501 C 1 
HETATM 51 H H163 G09 . . . H 2 -57.735 -24.559 -24.768 1 79.83 ? H163 G09 501 C 1 
HETATM 52 H H191 G09 . . . H 2 -53.826 -19.302 -26.174 1 74.19 ? H191 G09 501 C 1 
HETATM 53 H H231 G09 . . . H 2 -54.632 -22.245 -28.744 1 97.43 ? H231 G09 501 C 1 
HETATM 54 H H251 G09 . . . H 2 -51.035 -17.973 -28.927 1 108.37 ? H251 G09 501 C 1 
HETATM 55 H H252 G09 . . . H 2 -49.952 -18.829 -28.153 1 108.37 ? H252 G09 501 C 1 
HETATM 56 H H271 G09 . . . H 2 -49.014 -16.326 -29.253 1 104.79 ? H271 G09 501 C 1 
HETATM 57 H H291 G09 . . . H 2 -46.735 -17.164 -32.452 1 108.2 ? H291 G09 501 C 1 
HETATM 58 H H301 G09 . . . H 2 -47.67 -19.281 -32.563 1 118.21 ? H301 G09 501 C 1 
HETATM 59 H H311 G09 . . . H 2 -49.276 -19.912 -31.016 1 115.81 ? H311 G09 501 C 1 
HETATM 60 H H332 G09 . . . H 2 -61.242 -20.823 -29.158 1 74.97 ? H332 G09 501 C 1 
HETATM 61 H H331 G09 . . . H 2 -61.865 -19.37 -29.126 1 74.97 ? H331 G09 501 C 1 
HETATM 62 H H1 G09 . . . H 2 -63.396 -21.788 -29.198 1 109.81 ? H1 G09 501 C 1 
HETATM 63 H H2 G09 . . . H 2 -65.271 -20.612 -29.53 1 93.3 ? H2 G09 501 C 1 
HETATM 64 H H351 G09 . . . H 2 -64.479 -19.236 -29.256 1 93.3 ? H351 G09 501 C 1 
HETATM 65 H H041 G09 . . . H 2 -64.413 -19.296 -24.181 1 59.78 ? H041 G09 501 C 1 
HETATM 66 H H101 G09 . . . H 2 -59.256 -20.983 -28.224 1 83.46 ? H101 G09 501 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           66 
#