data_7CK2 # _model_server_result.job_id GPDF2za0x1yqaivAR8BeKQ _model_server_result.datetime_utc '2024-11-14 05:33:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ck2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 7CK2 # _exptl.entry_id 7CK2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.15 _cell.angle_gamma 90 _cell.entry_id 7CK2 _cell.length_a 54.36 _cell.length_b 148.53 _cell.length_c 94.09 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CK2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 302 A CYS 618 1_555 A SG CYS 400 A CYS 782 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf2 B SG CYS 302 B CYS 618 1_555 B SG CYS 400 B CYS 782 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc1 A NE2 HIS 203 A HIS 519 1_555 D MN MN . A MN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc2 A NZ LYS 205 A LYS 521 1_555 C MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc3 A OD2 ASP 229 A ASP 545 1_555 C MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc4 C MN MN . A MN 801 1_555 I O HOH . A HOH 936 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc5 D MN MN . A MN 802 1_555 I O HOH . A HOH 938 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc6 D MN MN . A MN 802 1_555 I O HOH . A HOH 949 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc7 D MN MN . A MN 802 1_555 I O HOH . A HOH 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc8 D MN MN . A MN 802 1_555 I O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc9 B NE2 HIS 203 B HIS 519 1_555 G MN MN . B MN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc10 B NZ LYS 205 B LYS 521 1_555 F MN MN . B MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc11 B OD1 ASP 229 B ASP 545 1_555 F MN MN . B MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc12 G MN MN . B MN 802 1_555 J O HOH . B HOH 961 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7CK2 _atom_sites.fract_transf_matrix[1][1] 0.018396 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004298 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006733 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010914 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 801 844 MN MN . D 2 MN A 1 802 845 MN MN . E 3 UPG A 1 803 846 UPG UPG . F 2 MN B 1 801 844 MN MN . G 2 MN B 1 802 845 MN MN . H 3 UPG B 1 803 846 UPG UPG . I 4 HOH A 1 901 170 HOH HOH . I 4 HOH A 2 902 219 HOH HOH . I 4 HOH A 3 903 146 HOH HOH . I 4 HOH A 4 904 147 HOH HOH . I 4 HOH A 5 905 7 HOH HOH . I 4 HOH A 6 906 200 HOH HOH . I 4 HOH A 7 907 151 HOH HOH . I 4 HOH A 8 908 99 HOH HOH . I 4 HOH A 9 909 133 HOH HOH . I 4 HOH A 10 910 110 HOH HOH . I 4 HOH A 11 911 53 HOH HOH . I 4 HOH A 12 912 159 HOH HOH . I 4 HOH A 13 913 162 HOH HOH . I 4 HOH A 14 914 150 HOH HOH . I 4 HOH A 15 915 24 HOH HOH . I 4 HOH A 16 916 4 HOH HOH . I 4 HOH A 17 917 22 HOH HOH . I 4 HOH A 18 918 173 HOH HOH . I 4 HOH A 19 919 34 HOH HOH . I 4 HOH A 20 920 112 HOH HOH . I 4 HOH A 21 921 3 HOH HOH . I 4 HOH A 22 922 9 HOH HOH . I 4 HOH A 23 923 235 HOH HOH . I 4 HOH A 24 924 45 HOH HOH . I 4 HOH A 25 925 123 HOH HOH . I 4 HOH A 26 926 1 HOH HOH . I 4 HOH A 27 927 29 HOH HOH . I 4 HOH A 28 928 82 HOH HOH . I 4 HOH A 29 929 180 HOH HOH . I 4 HOH A 30 930 35 HOH HOH . I 4 HOH A 31 931 86 HOH HOH . I 4 HOH A 32 932 10 HOH HOH . I 4 HOH A 33 933 152 HOH HOH . I 4 HOH A 34 934 26 HOH HOH . I 4 HOH A 35 935 11 HOH HOH . I 4 HOH A 36 936 77 HOH HOH . I 4 HOH A 37 937 30 HOH HOH . I 4 HOH A 38 938 97 HOH HOH . I 4 HOH A 39 939 102 HOH HOH . I 4 HOH A 40 940 17 HOH HOH . I 4 HOH A 41 941 208 HOH HOH . I 4 HOH A 42 942 190 HOH HOH . I 4 HOH A 43 943 40 HOH HOH . I 4 HOH A 44 944 64 HOH HOH . I 4 HOH A 45 945 65 HOH HOH . I 4 HOH A 46 946 60 HOH HOH . I 4 HOH A 47 947 27 HOH HOH . I 4 HOH A 48 948 176 HOH HOH . I 4 HOH A 49 949 98 HOH HOH . I 4 HOH A 50 950 204 HOH HOH . I 4 HOH A 51 951 37 HOH HOH . I 4 HOH A 52 952 191 HOH HOH . I 4 HOH A 53 953 39 HOH HOH . I 4 HOH A 54 954 79 HOH HOH . I 4 HOH A 55 955 154 HOH HOH . I 4 HOH A 56 956 197 HOH HOH . I 4 HOH A 57 957 100 HOH HOH . I 4 HOH A 58 958 181 HOH HOH . I 4 HOH A 59 959 199 HOH HOH . I 4 HOH A 60 960 62 HOH HOH . I 4 HOH A 61 961 177 HOH HOH . I 4 HOH A 62 962 94 HOH HOH . I 4 HOH A 63 963 50 HOH HOH . I 4 HOH A 64 964 55 HOH HOH . I 4 HOH A 65 965 228 HOH HOH . I 4 HOH A 66 966 69 HOH HOH . I 4 HOH A 67 967 182 HOH HOH . I 4 HOH A 68 968 111 HOH HOH . I 4 HOH A 69 969 91 HOH HOH . I 4 HOH A 70 970 160 HOH HOH . I 4 HOH A 71 971 134 HOH HOH . I 4 HOH A 72 972 51 HOH HOH . I 4 HOH A 73 973 67 HOH HOH . I 4 HOH A 74 974 109 HOH HOH . I 4 HOH A 75 975 25 HOH HOH . I 4 HOH A 76 976 88 HOH HOH . I 4 HOH A 77 977 12 HOH HOH . I 4 HOH A 78 978 8 HOH HOH . I 4 HOH A 79 979 76 HOH HOH . I 4 HOH A 80 980 47 HOH HOH . I 4 HOH A 81 981 184 HOH HOH . I 4 HOH A 82 982 84 HOH HOH . I 4 HOH A 83 983 135 HOH HOH . I 4 HOH A 84 984 211 HOH HOH . I 4 HOH A 85 985 48 HOH HOH . I 4 HOH A 86 986 49 HOH HOH . I 4 HOH A 87 987 58 HOH HOH . I 4 HOH A 88 988 222 HOH HOH . I 4 HOH A 89 989 195 HOH HOH . I 4 HOH A 90 990 132 HOH HOH . I 4 HOH A 91 991 193 HOH HOH . I 4 HOH A 92 992 107 HOH HOH . I 4 HOH A 93 993 169 HOH HOH . I 4 HOH A 94 994 168 HOH HOH . I 4 HOH A 95 995 83 HOH HOH . I 4 HOH A 96 996 161 HOH HOH . I 4 HOH A 97 997 163 HOH HOH . I 4 HOH A 98 998 220 HOH HOH . I 4 HOH A 99 999 122 HOH HOH . I 4 HOH A 100 1000 210 HOH HOH . I 4 HOH A 101 1001 218 HOH HOH . I 4 HOH A 102 1002 125 HOH HOH . I 4 HOH A 103 1003 106 HOH HOH . I 4 HOH A 104 1004 127 HOH HOH . I 4 HOH A 105 1005 212 HOH HOH . I 4 HOH A 106 1006 215 HOH HOH . I 4 HOH A 107 1007 114 HOH HOH . I 4 HOH A 108 1008 232 HOH HOH . I 4 HOH A 109 1009 209 HOH HOH . I 4 HOH A 110 1010 234 HOH HOH . I 4 HOH A 111 1011 113 HOH HOH . I 4 HOH A 112 1012 192 HOH HOH . I 4 HOH A 113 1013 236 HOH HOH . I 4 HOH A 114 1014 229 HOH HOH . I 4 HOH A 115 1015 185 HOH HOH . I 4 HOH A 116 1016 230 HOH HOH . I 4 HOH A 117 1017 158 HOH HOH . I 4 HOH A 118 1018 74 HOH HOH . I 4 HOH A 119 1019 54 HOH HOH . I 4 HOH A 120 1020 66 HOH HOH . I 4 HOH A 121 1021 179 HOH HOH . I 4 HOH A 122 1022 198 HOH HOH . I 4 HOH A 123 1023 207 HOH HOH . J 4 HOH B 1 901 205 HOH HOH . J 4 HOH B 2 902 116 HOH HOH . J 4 HOH B 3 903 118 HOH HOH . J 4 HOH B 4 904 131 HOH HOH . J 4 HOH B 5 905 143 HOH HOH . J 4 HOH B 6 906 221 HOH HOH . J 4 HOH B 7 907 52 HOH HOH . J 4 HOH B 8 908 201 HOH HOH . J 4 HOH B 9 909 13 HOH HOH . J 4 HOH B 10 910 213 HOH HOH . J 4 HOH B 11 911 224 HOH HOH . J 4 HOH B 12 912 126 HOH HOH . J 4 HOH B 13 913 57 HOH HOH . J 4 HOH B 14 914 120 HOH HOH . J 4 HOH B 15 915 137 HOH HOH . J 4 HOH B 16 916 108 HOH HOH . J 4 HOH B 17 917 105 HOH HOH . J 4 HOH B 18 918 72 HOH HOH . J 4 HOH B 19 919 28 HOH HOH . J 4 HOH B 20 920 203 HOH HOH . J 4 HOH B 21 921 80 HOH HOH . J 4 HOH B 22 922 216 HOH HOH . J 4 HOH B 23 923 206 HOH HOH . J 4 HOH B 24 924 6 HOH HOH . J 4 HOH B 25 925 42 HOH HOH . J 4 HOH B 26 926 38 HOH HOH . J 4 HOH B 27 927 14 HOH HOH . J 4 HOH B 28 928 141 HOH HOH . J 4 HOH B 29 929 93 HOH HOH . J 4 HOH B 30 930 31 HOH HOH . J 4 HOH B 31 931 183 HOH HOH . J 4 HOH B 32 932 19 HOH HOH . J 4 HOH B 33 933 36 HOH HOH . J 4 HOH B 34 934 226 HOH HOH . J 4 HOH B 35 935 85 HOH HOH . J 4 HOH B 36 936 144 HOH HOH . J 4 HOH B 37 937 18 HOH HOH . J 4 HOH B 38 938 92 HOH HOH . J 4 HOH B 39 939 96 HOH HOH . J 4 HOH B 40 940 32 HOH HOH . J 4 HOH B 41 941 142 HOH HOH . J 4 HOH B 42 942 2 HOH HOH . J 4 HOH B 43 943 23 HOH HOH . J 4 HOH B 44 944 75 HOH HOH . J 4 HOH B 45 945 87 HOH HOH . J 4 HOH B 46 946 103 HOH HOH . J 4 HOH B 47 947 20 HOH HOH . J 4 HOH B 48 948 63 HOH HOH . J 4 HOH B 49 949 33 HOH HOH . J 4 HOH B 50 950 145 HOH HOH . J 4 HOH B 51 951 202 HOH HOH . J 4 HOH B 52 952 21 HOH HOH . J 4 HOH B 53 953 121 HOH HOH . J 4 HOH B 54 954 171 HOH HOH . J 4 HOH B 55 955 157 HOH HOH . J 4 HOH B 56 956 78 HOH HOH . J 4 HOH B 57 957 139 HOH HOH . J 4 HOH B 58 958 59 HOH HOH . J 4 HOH B 59 959 68 HOH HOH . J 4 HOH B 60 960 44 HOH HOH . J 4 HOH B 61 961 225 HOH HOH . J 4 HOH B 62 962 119 HOH HOH . J 4 HOH B 63 963 217 HOH HOH . J 4 HOH B 64 964 140 HOH HOH . J 4 HOH B 65 965 188 HOH HOH . J 4 HOH B 66 966 178 HOH HOH . J 4 HOH B 67 967 148 HOH HOH . J 4 HOH B 68 968 149 HOH HOH . J 4 HOH B 69 969 117 HOH HOH . J 4 HOH B 70 970 136 HOH HOH . J 4 HOH B 71 971 43 HOH HOH . J 4 HOH B 72 972 124 HOH HOH . J 4 HOH B 73 973 5 HOH HOH . J 4 HOH B 74 974 115 HOH HOH . J 4 HOH B 75 975 153 HOH HOH . J 4 HOH B 76 976 56 HOH HOH . J 4 HOH B 77 977 231 HOH HOH . J 4 HOH B 78 978 164 HOH HOH . J 4 HOH B 79 979 165 HOH HOH . J 4 HOH B 80 980 174 HOH HOH . J 4 HOH B 81 981 130 HOH HOH . J 4 HOH B 82 982 81 HOH HOH . J 4 HOH B 83 983 138 HOH HOH . J 4 HOH B 84 984 15 HOH HOH . J 4 HOH B 85 985 16 HOH HOH . J 4 HOH B 86 986 155 HOH HOH . J 4 HOH B 87 987 73 HOH HOH . J 4 HOH B 88 988 61 HOH HOH . J 4 HOH B 89 989 172 HOH HOH . J 4 HOH B 90 990 166 HOH HOH . J 4 HOH B 91 991 89 HOH HOH . J 4 HOH B 92 992 186 HOH HOH . J 4 HOH B 93 993 233 HOH HOH . J 4 HOH B 94 994 175 HOH HOH . J 4 HOH B 95 995 189 HOH HOH . J 4 HOH B 96 996 187 HOH HOH . J 4 HOH B 97 997 194 HOH HOH . J 4 HOH B 98 998 214 HOH HOH . J 4 HOH B 99 999 223 HOH HOH . J 4 HOH B 100 1000 227 HOH HOH . J 4 HOH B 101 1001 46 HOH HOH . J 4 HOH B 102 1002 196 HOH HOH . J 4 HOH B 103 1003 167 HOH HOH . J 4 HOH B 104 1004 156 HOH HOH . J 4 HOH B 105 1005 129 HOH HOH . J 4 HOH B 106 1006 101 HOH HOH . J 4 HOH B 107 1007 128 HOH HOH . J 4 HOH B 108 1008 95 HOH HOH . J 4 HOH B 109 1009 104 HOH HOH . J 4 HOH B 110 1010 70 HOH HOH . J 4 HOH B 111 1011 71 HOH HOH . J 4 HOH B 112 1012 41 HOH HOH . J 4 HOH B 113 1013 90 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 0.332 _atom_site.Cartn_y -14.69 _atom_site.Cartn_z -20.795 _atom_site.occupancy 0.31 _atom_site.B_iso_or_equiv 58.53 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 801 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 85 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #